Typing tool
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Typing tool
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Complete norovirus genomes
| KJ402295 | GI.5 | |
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| GI.P5 |
ORF1: 1..777
ORF2: 761..2392
ORF3: 2392..3018
LOCUS KJ402295 3108 bp RNA linear VRL 22-APR-2014
DEFINITION Norovirus Hu/GI.5/Siklos-HUN5407/2013/HUN RNA-dependent RNA
polymerase, capsid protein, and minor structural protein genes,
partial cds.
ACCESSION KJ402295
VERSION KJ402295.1
KEYWORDS .
SOURCE Norovirus Hu/GI.5/Siklos-HUN5407/2013/HUN
ORGANISM Norovirus Hu/GI.5/Siklos-HUN5407/2013/HUN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3108)
AUTHORS Pankovics,P. and Reuter,G.
TITLE Detection of GI.5 norovirus in Hungary
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3108)
AUTHORS Pankovics,P. and Reuter,G.
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2014) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Sevice, Szabadsag
u. 7., Pecs, Baranya H-7623, Hungary
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3108
/organism="Norovirus Hu/GI.5/Siklos-HUN5407/2013/HUN"
/mol_type="genomic RNA"
/strain="Siklos-HUN5407/2013/HUN"
/isolation_source="fecal sample"
/host="Homo sapiens"
/db_xref="taxon:1486430"
/country="Hungary"
/collection_date="Nov-2013"
/note="genotype: GI.5"
CDS <1..777
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AHW99831.1"
/translation="RQIMTESFSIMCRLTATPELASVVAKDLLAPSEMDVGDYIIRVK
EGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDF
DPARLTQVLKEYGLRPTRPDKSEGPIVLRRQIDGLVFLRRTISKDAAGFQGRLDRGSI
ERQLWWTRGPNHDDPNETLIPHPQRKVQLISLLGEASLHGEKFYRKIAAKVIQEIKTG
GLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 761..2392
/codon_start=1
/product="capsid protein"
/protein_id="AHW99832.1"
/translation="MMMASKDAPSSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRVILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHIIADVRTLEPIEI
PLEDVRNTLYHTNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSSDFNFL
FLVPPTVEQKTRPFSVPNIPLQLLSNSRVPNLIQSMVLSPDQAQNVQFQNGRCTTDGQ
LLGTTPVSVSQILKFRGKVSAGSKVINLTELDGSPFLAFEAPAPTGFPDLGTSDWHVE
MSLNSNSQSSGNPILLRDIHPNSSEFVPHLGSVCVTAAIEVAGDYTGTIQWTSQPSNV
TPVPDVNFWTIPHYGSNLAEASQLAPVVYPPGFGEAIVYFMSPIPGPNTAHKPNLVPC
LLPQEFVTHFVSEQAPSMGEAALVHYVDPDTNRNLGEFKLYPEGFITCVPNGTGPQQL
PLNGVFVFASWVSRFYQLKPVGTASSARGRLGVRR"
CDS 2392..3018
/codon_start=1
/product="minor structural protein"
/protein_id="AHW99833.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN
SFKHDKEMMSYQVEMSNALLAKNLNTRYALLQSGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPNSSVTTLRSGGFMSVPIPVQPKQKSPTTSGFNNPAYGETMSRVSSWVQSQNS
SRSVSPFHNSALRTVWVTPPGSTSSSSVSSVPMGVFNTDRLPLFANRR"
ORIGIN
1 agacagatca tgactgaatc attttcaata atgtgccgcc tcacggctac accagagctg
61 gcttcagtgg tggctaaaga tcttctcgca ccgtctgaga tggatgttgg ggactatatc
121 ataagggtca aagaaggcct cccttcaggc ttcccctgta cttcacaagt caatagcata
181 aaccattggc taatcaccct ctgtgccctt tctgaggtta ccggactttc tcctgatgta
241 atacaatcac agtcatattt ctctttttat ggtgatgatg aaattgtgtc cactgatatt
301 gattttgacc cagcacgcct aacccaagtg cttaaagaat atggtcttcg ccccacacgc
361 ccagacaaga gtgaaggtcc aatagtgtta aggaggcaga ttgatgggtt ggtgtttctc
421 agaaggacca tatcaaaaga tgcggctggt tttcaaggcc gattggacag aggttctatt
481 gagaggcaac tttggtggac ccgtgggcca aaccacgatg atcccaatga gaccctgata
541 ccccacccac agagaaaggt acaactcata tcactgcttg gtgaggcctc tctccatggt
601 gaaaagttct acagaaaaat cgccgctaag gtcatccaag aaatcaagac tggtggctta
661 gaaatgtatg tgccaggctg gcaggccatg ttccgttgga tgcgctttca cgacctcgga
721 ttgtggacag gagatcgcaa tctcctgccc gaattcgtaa atgatgatgg cgtctaagga
781 cgccccatca agcgcagatg gcgcgaatgg cgccggtcag cttgtgccgg aggttaataa
841 tgctgaacca ctgccacttg atccagtggc gggggcttcc accgcccttg ccactgctgg
901 acaagttaat atgattgacc catggatctt caacaacttt gtccaggccc ctcagggtga
961 atttactatt tccccaaata atacccccgg tgatattttg tttgatttac aattaggtcc
1021 acatctaaat ccttttctag cacatttatc tcaaatgtat aatggctggg ttggcaatat
1081 gcgggttagg gttatcttgg ccggcaatgc tttcactgct ggtaaagtta taatctgttg
1141 tgttcccccc ggctttcaat ctagaactct ttctatagcc caggctacac tctttcccca
1201 catcatagct gatgtgcgaa ctctggaacc aattgagatc cctctggagg acgttaggaa
1261 tactctctat catactaatg acaatcaacc aacaatgcgc ttattgtgca tgctttacac
1321 gccactgcgc accggtggcg gctctggtgg cacagatgcg tttgttgtgg caggccgagt
1381 attaacttgt cctagttctg attttaattt cttatttcta gtccctccta ctgtagagca
1441 gaaaacacgc ccctttagtg tacctaacat acccttgcag ttgctgtcta attcccgcgt
1501 ccccaatctc atacaaagca tggtcctttc gcctgatcag gctcagaatg tccaatttca
1561 gaacggccgc tgcactaccg atgggcagct cttgggtaca acacctgtct cagttagtca
1621 gattctaaag tttagaggaa aggtgtcagc tggctctaaa gtcatcaacc ttactgaact
1681 ggatggttcc ccctttctag cttttgaggc cccagcaccc acgggttttc ctgacctggg
1741 aaccagtgat tggcatgttg agatgagcct caactcaaat agccagagct ctggcaaccc
1801 tattttgttg agggacatac acccaaattc ctcagaattt gtgccgcatt tgggcagtgt
1861 gtgtgtcacc gctgcaattg aagtcgctgg ggattacact ggcacaattc aatggacctc
1921 tcaaccatct aacgtcactc cagtccccga tgtcaacttc tggaccatcc cccattatgg
1981 atcaaatttg gcagaagcct cccagttggc ccctgtggtg taccccccag gatttggtga
2041 agctatagtg tattttatgt cccccatacc aggcccaaac actgcacaca aacccaattt
2101 ggtaccttgc ctactcccac aagaatttgt aacacatttt gtcagtgaac aagctccatc
2161 catgggtgag gcagcccttg tccattatgt tgacccagac actaatcgca acttgggtga
2221 gttcaaattg taccctgagg gttttatcac atgtgtgccg aatggcactg gcccacaaca
2281 actccctctt aatggagttt ttgtctttgc ttcctgggtc tccagatttt atcaattaaa
2341 gcctgtggga acggccagct cggccagagg taggcttgga gttagaagat aatggctcaa
2401 gccatcattg gagccattgc tgcatcggcg gctggaagtg cccttggagc tggtatccaa
2461 gcaggtgctg aggccgccct ccagagccag aggttccagc aggacctcac cctccaacaa
2521 aattctttta agcatgataa ggagatgatg tcatatcaag ttgaaatgtc taatgctttg
2581 ctagctaaaa atcttaatac tcgctatgct ttgcttcaat ctggtggtct atctagtgct
2641 gatgctgctc gtgctgtggc aggtgcgcct gtcacaagga ttgttgactg gaacggcaca
2701 agggtagcag ccccaaattc ctccgtaaca actcttaggt ctggtggatt tatgtctgtt
2761 cctatacctg ttcaacccaa acagaagtcc cctaccacct cagggtttaa caatccagca
2821 tatggagaaa ctatgtcaag ggtttcctcc tgggttcagt cccagaattc aagtagaagt
2881 gtgtctcctt ttcacaattc tgcccttagg actgtttggg tcactccacc aggctcaact
2941 tcttcttcat ctgtttcatc tgtgcctatg ggtgtgttta acaccgatag gctcccccta
3001 ttcgcaaata ggagataata ttgttgtaat aagaataaca atgtgggcat cttattcaat
3061 ttggtctaat taattatata attaggtttg atttggacaa ttgatgtt
//