Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196298 | GI.8 | |
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| GI.P8 |
ORF1: 5..5404
ORF2: 5388..7019
ORF3: 7019..7660
LOCUS KJ196298 7745 bp RNA linear VRL 21-AUG-2015
DEFINITION Norovirus GI/Hu/JP/2007/GI.P8_GI.8/Nagoya/KY531, complete genome.
ACCESSION KJ196298
VERSION KJ196298.1
KEYWORDS .
SOURCE Norovirus GI/Hu/JP/2007/GI.P8_GI.8/Nagoya/KY531
ORGANISM Norovirus GI/Hu/JP/2007/GI.P8_GI.8/Nagoya/KY531
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7745)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7745
/organism="Norovirus
GI/Hu/JP/2007/GI.P8_GI.8/Nagoya/KY531"
/mol_type="genomic RNA"
/isolate="Nagoya/KY531"
/host="Homo sapiens"
/db_xref="taxon:1529910"
/country="Japan"
/collection_date="2007"
/note="genotype: GI.P8_GI.8"
CDS 5..5404
/codon_start=1
/product="polyprotein"
/protein_id="AII73782.1"
/translation="MMMASNDAIAVADVSNNNANTNNENIGSRLMARIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPARQESPPKDQRDRPPRTVSEVKRAMKWDVEPEHRE
STARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSTLPSTFERAETNNDVGDQQAVSWSA
NDGVNIGVSDLTTVHGPFWNMCPLPPLDARNNGPAKEPLIGEMIEFYEGHIFHYAIYI
GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNDRQRLTYDQLKELENEPWPYAA
VTNNCYEFCCRVMALDDTWLQRRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
SAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELIVLMAELFDIFWTPPDIS
SFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQL
GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMN
VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMC
GPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
VDFLVYCSAPEIEQMRRAHPGDTNAIKDLYKKDFTHLKMELAPQGGFDSQGNTPFGKG
VMKPTTLNRLLIQATALAMERQDEFQLQGATYNFDEDRVAAFTNLARANGLGLISMAT
LGKKLRGVKSMEGLRNALLGYKIEECDIVWNTRMYSIKSDGNTVTIKEKQAPTSPQHQ
AICTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPML
EGKHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEEESVQTVELPTASEEGKNK
GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE
VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPP
KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE
VFGESISNVAIHRVGEFTQFRFPKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLP
LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC
GVHAAATKSGNTVVCAIQGGEGEATLEGGDRNKGHYAGHPILRYGNGPSLSTKTKFWK
STPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
TVTNALEQVMDTPVAWSFSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAH
ANNMYELGKPMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCE
AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHYDADYTAWDSTQNREIMMESFNIM
CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCA
LSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGP
IIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQR
KVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT
GDRDLLPDYVNDDGV"
gene 5388..7019
/gene="VP1"
CDS 5388..7019
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73783.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
gene 7019..7660
/gene="VP2"
CDS 7019..7660
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73784.1"
/translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARVIAGAPPTKVVDWNG
VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMVSRTSQWVESQ
NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgaaaata ttgggtcccg ccttatggcg aggatccgtg ggcgcatagg
121 cccacaacgt ggtgaaacaa ctacaaagat taaggatgcc aatatggcac ttgacctgct
181 acgccggtca caaacacctt ccccagctcg acaagagagt ccccccaaag atcagagaga
241 tcgtcctcca cgaaccgttt cagaggttaa aagggccatg aagtgggatg ttgaaccaga
301 acaccgggaa agtacagcaa gagcctggtg cgatctctcg aaggaagaaa aagaggagat
361 aatgcgcaac aatgagaagc tgtttgatgc tgggggagtc actccatcaa ctctacccag
421 cacatttgaa agggctgaaa caaacaatga tgttggtgac caacaagctg tatcatggtc
481 tgctaatgat ggagtgaata ttggcgttag tgatctgacc actgtccatg gaccattttg
541 gaatatgtgc cccctcccac cattggacgc tcgcaacaat ggtcctgcca aagagcctct
601 cataggggag atgatagagt tctatgaagg ccacatattc cactacgcca tttatatagg
661 gcaaggtaag actattgggg tccactcgcc acaggctgct ttttccatac ccagaataac
721 catccaccct ttggtggctt ggtggcgcgt gtgttatgtt cccaatgacc gtcaacgcct
781 cacctatgat caacttaaag aattggagaa tgaaccatgg ccatatgccg ctgttactaa
841 caactgctat gaattttgtt gtagagtgat ggcgctagat gacacttggc tccaaaggag
901 actggttagc actggaaagt tcaaccaccc cacacaggat tggtcacaag acaccccaga
961 cttccaccaa gattcgaagt tagaaatggt gagagatgct gtattgtcag ccattaacgg
1021 tcttgtgtca caacccttca aaaacattct ttcaaagatc aagccattaa atgtgctcaa
1081 tcttttatca aactgtgatt ggaccttcat gggggttgta gagctgatcg tcctcatggc
1141 agaattgttc gatatattct ggactccacc agatatctcg agctttattg catcgctgtt
1201 gccagatttt catcttcaag gcccagagga cttagctagg gacctggtcc cactcatact
1261 aggtggcatt ggcctagcaa ttggcttcac aagagacaag ataacaaaag tgatgaagag
1321 tgccgttgat ggtctgcggt cagcgacaca gcttggacag tatggattag aaatattctc
1381 aatcataaag aaatacttct ttggaggtga ccagacagaa aagaccctcc ggggcatcga
1441 ggatgcagtg atagacatgg aggtattgtc cagcaccaac gtaacacaat tggtcaagga
1501 caagaagttg gccagaactt acatgaatgt actggataat gaggaagaaa aggctagaaa
1561 actctcagtc cgcagtgctg acccacacat agtaacctca gtcaacaact tgatatcccg
1621 catttcaatg gcaagatcag ccctggccaa ggcccaagca gagatgacat cccgcccacg
1681 cccagtggtc ataatgatgt gtggtccccc tggcattggg aaaacgaaag ctgctgagca
1741 tctggcgggc cgattggctg ccgaaataag accaggggga aaagtcggtc ttgtgccgcg
1801 agagtccata gaccactggg acggttatca tggtgaggac gttctgctct gggatgatta
1861 tggtatgtca aaaataacag aagattgcaa taaattgcaa gccatagctg acactgcacc
1921 actgtcactc aattgtgaca ggatagaaaa caaaggcatg cagttctcct ctgatgcaat
1981 aattattacc accaatgctc ctggtccagc tccagttgac tttgttaatc tgggtcctgt
2041 gtgcaggcgg gtagactttt tagtatactg ctctgctcca gaaattgaac aaatgcggag
2101 ggcccaccca ggtgacacta atgctattaa ggacctgtac aagaaagatt ttacgcacct
2161 caagatggaa ttagctccac aaggtggctt tgatagccag ggcaacacgc cgtttggaaa
2221 aggtgttatg aagcccacaa ccctcaatag gctattgatc caggccacag cattagccat
2281 ggagcggcaa gatgagtttc agcttcaagg ggccacctac aattttgacg aggatagggt
2341 ggccgctttc accaacttag cacgcgccaa tggcctgggg ctcataagca tggcaacatt
2401 gggtaagaaa ttgaggggtg tcaaatcaat ggaggggctg cgcaatgcac tattgggcta
2461 taaaatagaa gaatgtgaca tagtctggaa caccagaatg tactctatta agagtgacgg
2521 gaataccgtc acaattaaag agaagcaggc accaacctcg ccccaacacc aggctatctg
2581 cacggccacc ctcgcgctct cccggttgcg ggctgctagg gcccttgcat atgcttcttg
2641 cttacagagt gctgtgctgt caatacttca ggtggctgga tccgctgtgg tggtgagcag
2701 ggccgttaag cgcatgtttg gtacgcgcac cgaacagcct atgctagaag gtaagcacaa
2761 ggaacataat tgcagagtgc accgagctga ggcagccggc catggcccca ttggccacga
2821 tggggtcatt gaacgctatg gcctgtgtga gagtgaacaa gaggaggaaa gcgtccagac
2881 agtagaacta cccactgcca gtgaggaggg caagaacaaa ggtaagacca agaagggtcg
2941 tgggcgaaag tctaatttca atgccttctc cagacgcggc cttagtgatg aggagtatga
3001 ggagtacaag aaaatcaggg aggagaaaag tggcaactac agtatacaag agtaccttga
3061 agaccgacaa cgctacgagg aagagcttgc tgaagtgcag gcgggcggag atggcggaat
3121 aggtgaaact gaggcagaaa tccgccatcg ggtcttctat aaatcaaaat ctggtatgag
3181 gaaacaacgc caagaagaac ggcgccagct agggctcgtg agcggcaccg agatcagaaa
3241 gcgcaaaccc atagactgga ccccccccaa gaacgattgg tcagaggaca ctagaacagt
3301 caattatgac gaacatatca gttttgaagc accaccctca atctggagta gagtggtaaa
3361 atttggtagt ggttggggtt tctgggttag ctcaacagtg ttcatcacca cgacccatgt
3421 cataccacct ggggccaagg aagtttttgg tgaaagcatc agtaatgtgg ctatccatag
3481 agtcggtgaa ttcacccagt ttcgcttccc taaaaagatg agacctgatc tctctggtat
3541 ggtgctagag gaaggttgtc cagaaggcac agtatgcacc ataatgataa agagagactc
3601 tggtgagctg ttaccacttg ctgttcgcat gggtgcagtg gcctcaatga aaatccaagg
3661 aaagctcatg catggacaat caggaatgtt gctcactggc gccaatgcca aaggcatgga
3721 cctcgggacc atacccggtg actgtggggc gccttacgtc cacaaaaggg gtaacgattg
3781 ggttgtttgc ggagtccatg cagctgccac aaaatcaggt aacactgtag tttgtgctat
3841 acaaggtggt gagggtgaag ccacgctaga gggtggcgac cgcaataagg gccattatgc
3901 aggacaccca atattgagat acgggaatgg cccttcactc tcaactaaaa caaaattttg
3961 gaagtcaacc ccacaacccc tacctccagg tacttacgaa ccagcttatc tcggaggtag
4021 agaccccagg gtcgaagggg gcccatcact acaacaagtt ctaagggacc agctaaaacc
4081 atttgctgaa cctcgaggca gattacctga ggcgggattg ctagaagccg cagttgagac
4141 agtcaccaat gcacttgaac aggtcatgga cacaccagtg gcatggagtt tcagtgatgc
4201 ttgcatgtct ttggataaaa caactagctc tggctatccc caccataaga ggaagaatga
4261 tgattggaat gggagttcat tcgtgcgaga gctgggagac caagcagccc acgccaataa
4321 catgtatgaa cttggcaaac ccatgaagcc cgtgtacaca gcagccctca aggacgagct
4381 tgttaaacca gataaggttt acaataaaat caagaagaga ctgctttggg gagctgacct
4441 tggtactgtc atacgtgctg ctagggcctt tggaccattc tgtgaggcca taaagccaca
4501 tgtgattaag ttgcctatca aagtgggcat gaatgccata gaagatggcc ctctgatata
4561 tgcagaacat tctaaatata agtaccatta tgatgctgat tacactgctt gggactcaac
4621 gcaaaacaga gagattatga tggagtcctt caatatcatg tgcaagctca cagccaatcc
4681 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
4741 ttatgtaatc agtgttaaag atggtctgcc atctggcttt ccatgcacct cacaagtcaa
4801 cagcattaac cactggatca tgaccctatg tgcactatca gaggtcactg gcttatcccc
4861 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
4921 agacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
4981 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
5041 cttccttcgt cgcacaattt cgaaggacgc tattgggtac caaggtcgac ttgaccgcaa
5101 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc cgtttgagac
5161 tctggtgcca cactcacaaa gaaaagttca attgatatcc ctactgggtg aggccgccct
5221 acatggtgaa aaattctaca ggaagatagc cagtagggtc atccaagaag ttaaggaagg
5281 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
5341 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
5461 caaatacagc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
5521 ccgccggtca ggtaaatatg attgacccct ggataatgaa taattttgta caggctcccc
5581 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
5641 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtacaat ggctgggttg
5701 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagattattg
5761 tgtgctgcat accgccgggt ttttcttctc aatctatttc tattgctcaa gctacaatgt
5821 tcccacatgt catagctgat gttagagtgt tagaacctat tgatgtaccc ttagatgatg
5881 ttagaaatgt cctttttcat aataatgata acccccaaac gatgagattg ctttgcatgt
5941 tgtatacacc ccttcggtct ggtggtacat cttcaggtac agatcctttt gtcattgctg
6001 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
6061 tcgagcaaag aactaagcca ttcagtgtac ccaatatccc tatgaacctg atgtccaatt
6121 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
6181 agtttcagaa tggtcgagtc actttagatg gacagctgca gggtaccacc acagtttcag
6241 ctgcgtgtgt agcaaggatg aggggacgca tttttaataa taatggcaat tatggtgtga
6301 acctgactga actggatggc aatccttatc atgcctttga tagcccggct cctttaggct
6361 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaac cccaatgagt
6421 tgtcctctgg agacccttct ggcaaagtgg tcattcattc ctacgatgcc acttttgccc
6481 cccatcttgg tactgtcaaa ctggagaatg atgatgagct agctcggttt gtgggtaagg
6541 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
6601 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
6661 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
6721 caaaagtccc atgtacactt cctcaagaat ttgtttcaca ttttgtcaat gaacaggccc
6781 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacat cgtaatcttg
6841 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
6901 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
6961 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtcttagg agatcataat
7021 ggcccaggct gtcttgggag ccattgctgc gactgcagca ggaagtgctg tgggagcagg
7081 tattgaagct ggcacacagg ccgccctaca acatcaaagg tatcaacagg atttaaatat
7141 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
7201 tgctttattg caaagaaatt tggccacaag atataatttg ctgagtgcag caggcttgtc
7261 gtctgcagat gctgctaggg tgatagcagg tgctccacca actaaagtag tggattggaa
7321 tggagtcaga atatctgccc ccacatcaag tgcaataacc ctaaaatctg gcagttttat
7381 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcatag acaacccaaa
7441 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg aatctcaaaa
7501 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
7561 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
7621 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
7681 gcattatatt cagattggct tttgattata attaatttaa tttggctgat tagaaattta
7741 atgtt
//