Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196295 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS KJ196295 7543 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus
GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi, complete
genome.
ACCESSION KJ196295
VERSION KJ196295.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi
ORGANISM Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7543)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7543
/organism="Norovirus
GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi"
/mol_type="genomic RNA"
/isolate="Musashimurayama/TAKAsanKimchi"
/host="Homo sapiens"
/db_xref="taxon:1529923"
/geo_loc_name="Japan"
/collection_date="2010"
/note="genotype: GII.P7_GII.7"
CDS 5..5098
/codon_start=1
/product="polyprotein"
/protein_id="AII73773.1"
/translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGAVPKGIKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFVASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVKPTETQEVNEPEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNKNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6701
/gene="VP1"
CDS 5079..6701
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73774.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 6701..7474
/gene="VP2"
CDS 6701..7474
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73775.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNGQFLKVDPSPPSSSGSSVSSVKTQ
STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtaat aacgccaccc cttctaacaa agaagaggtc ggtgcattct ccaacatcaa
121 agttggattc aagaaaatgc tgggtgccgt acccaagggc atcaaagcac ccagcagtgg
181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc
241 aaatggtgaa gacaccgtac agtttgatgc aaagtcagaa actataattg ggttgccaga
301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cattaagtga
361 gagggagcac agaccggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
421 tgagttttac cattactccg tgtacgtcag cgacggcaaa gctctggggg tccacaaacc
481 accggcggct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc
541 cgtttatacc cccaattact tggtctcccc ggacacatta aagggcctcg ctggtgagaa
601 gttcccctac acggccttca gtaacaactg ttataacttc tgttgctggg tgctagagct
661 caacgacacg tggcttaaca gaagatgcat ttccagaact accggcttct tcaaaccata
721 ccagtcttgg aacaggaaac ctctcccaac cgttgatgat gggaagatca aaaaggtggc
781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg
841 caaactcaag ccattgaatc tactgcactt gctcgcgtct tgtgactgga cgtttgcggg
901 tatagtggag acagtcatct tgatggcaga gcttttcaat gtcttctgga ccccgccaga
961 tgtctctaat tttgtagcct ccctaatagg tgattttgaa ttgcaagggc ctgaggacct
1021 ggctgtggag ctcgtccccg tggttatggg tggcataggg atggttctcg gtttcaccgc
1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct
1141 agggaactat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaagga
1201 agagaaagct gagatggaaa ccttgagggc aatcgaagat gccgtcctgg atatggaagc
1261 tatagggaac aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat
1321 gaagaccctg gatctggagg aggagaaggc taggaaactg tccactaaat catcttcacc
1381 ggacatagtc ggcaccatca atgccatact ggctaggata gctgctgcta gatccctttt
1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtta tgatctcagg
1501 cagacctggc attggaaaaa cccacatggc gagacatttg gctaagagca tcgccaacac
1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggtgtcgatc actgggatgc
1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
1681 cgccctaaca ctacaagagc tggccgatac atgtccagtc actttaaatt gtgataggat
1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
1921 gtggaaagat cattttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccctaaccca
2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg agttccagct
2101 ccaagggaat gacctccaaa catacaactt tgacaccaac agagtctccg cattcaggaa
2161 attggctgca gataacaagt atgggatcat ggagacgatg agagtgggtg cggcactcaa
2221 gaatgtgaag accctagaag accttaaaat tgcattgagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaagaact ctaagtaccg agtctcttcc aacggtaaag gttcagtttc
2341 tgttgataaa gttgaggaca atgcatccca gactgtaaac gaggtacaat cagcacttct
2401 caggctcagg caagcgaggg ccagatatta tatcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccggag catcattcgt tgtcaacagg atctccagaa ggttctgctg
2521 ggaaaggtgg gtcaaaccga ccgaaaccca ggaggtgaat gagcccgaaa aggaagtggc
2581 acaaggcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaagaa
2641 caagaaagga aggggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaacgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca
2881 gaggaaggag gaaaggggtg tgcttggctt agtcaccggc tcagacatca gaaagaggag
2941 accagatgac ttccaaccaa aaggcaacct atgggcagat gacaccagga gtgtggacta
3001 caatgagagg cttgattttg aagcgccccc gagtgtttgg tcaagaatag tcccattagg
3061 cactggttgg ggattctggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggagctct ttggagttga aatcaaacaa atccaagttc ataagtctgg
3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact
3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga
3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac
3361 cgttggtggc cagatgggaa tgcttctcac aggagcaaac gcgaagaaca tggacctcgg
3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgcggcaacg acattgttgt
3481 cgcgggtgtt cataccgcag cagcccgggg aggcaacact gttatatgtg ccacccaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc
3601 aattctgggc cctggcaagg cgcctaaact cagcacgaag accaagtttt ggcgctcatc
3661 accagatgcc ttgccacctg gtacatatga acctgcttac ctaggaggca aagaccctag
3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga
3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa
3841 tgttctagaa caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc
3901 actggacaaa accacctcta gtggcagtcc ccatcacgtt aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga
4021 gcaggctaaa cacgtgcagc ccgtgtatac ggccgcgctc aaagacgagc ttgttaagac
4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtaggaa tgaacaagaa tgaagatggt cccattatat ttgacaaaca
4261 ttctaagtac aggtaccatt atgatgctga ctattctagg tgggactcaa cccaacaaag
4321 gagcattctt tctgccgcta tggaagtaat ggtgcggttc tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat
4441 ctcagtccag gagggtctgc catcaggagt cccatgtaca tcacaatgga attcaatagc
4501 acactggatc ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagca ctgatatcaa
4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggtcttgtcc ccacccggcc
4681 tgataaaact gaaggtcccc tcgtcataac tgaagacctc actggcctga cgttcctccg
4741 taggtcgatt gctcgggacc cagctggctg gtttggaaag ctggaccaag actcaatcct
4801 caggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaaa gcatggttcc
4861 tcactctcag cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc
5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt ggggccagaa ctgaacccct
5341 atctcgctca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg
5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cctccagggt
5461 tcccatatga aaatttgtcg ccttcacaaa tcacaatgtg ccctcatgtt ataattgatg
5521 ttagacaatt agaaccagtt ctactaccta tgccagatat tagaaacaac ttcttccatt
5581 acaatcaggg caatgatcca aaattgagac tgatagctat gctctacacc cctttaaggg
5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggtcctcact aaaccgtcac
5701 ctgattttga gttcacattt ttggtccccc ctacggttga atctaagacc aaacagttca
5761 cattgcccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa
5821 tgatgtacac agccaggaat gagaaccaag ttgtccagcc acagaatggt agggtcacac
5881 ttgatggcga gctattaggt accacaccct tgttggctgt caacatctgc aaattcaagg
5941 gggaggtcat agctaagaat ggagatgtga gatcctatag gatggatatg gaaattacca
6001 acactgatgg caccccaatt gaccccacag aagacacacc tggtcccatt ggttcacctg
6061 actttcaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg
6121 ccacgagagc ccatgaagcc aacattaaca ctggtgggga ccaatacgcc cccaaattgg
6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca
6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat
6301 acggtggaca tctcaccaac aacacccact tggctccagc agtggccccc ttattcccag
6361 gtgagcagat tctgttcttt agatcacaaa tacccagctc aggcggccat gaattgggtt
6421 acatggactg ccttgtccca caagaatggg tccaacactt ctatcaagaa gctgccacag
6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg
6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca cactggtgat aacccaattg
6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg
6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttctttgc
6721 aaatttggca ggaggcgttg cctccaatgg aattagttca cttataaatg ctggggctaa
6781 tgctatcaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc
6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctgc aacaagagat
6901 gattgacata aaacaagggg tgctgacagc tgcgggattc tctcctacag atgccgcgag
6961 gggttctgtc ggcgcgccaa tgacaaaatt agttgattgg agtggcacta gatattgggc
7021 gcctggtgcc atgaggacaa caggctattc agggactttt actcacttgc cccctgtgca
7081 gtctgcttca tatgttaata atcaaaatgg acaatttctt aaagtagatc cttctcctcc
7141 ttcttcgagt ggttcttctg tttcttctgt caaaacacaa tcaactaccc tctcaggcac
7201 ttcaagggtg ggctcctcat ctcagtcaac cctgtcgacc aggccgagca caaggacatc
7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac
7321 aacgtatgta acgccaccat ccagtagggc atcaagtgtc agcacagtct cgaccgtgcc
7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc
7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag gaaagttgat
7501 tagtttgttc ttcctttcta ctattccttt aattctttct ttt
//