Typing tool
|
Complete norovirus genomes
KJ196295 | GII.7 | ||
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GII.P7 |
ORF1: 5..5098 ORF2: 5079..6701 ORF3: 6701..7474LOCUS KJ196295 7543 bp RNA linear VRL 10-AUG-2014 DEFINITION Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi, complete genome. ACCESSION KJ196295 VERSION KJ196295.1 KEYWORDS . SOURCE Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi ORGANISM Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7543) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7543 /organism="Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi" /mol_type="genomic RNA" /isolate="Musashimurayama/TAKAsanKimchi" /host="Homo sapiens" /db_xref="taxon:1529923" /country="Japan" /collection_date="2010" /note="genotype: GII.P7_GII.7" CDS 5..5098 /codon_start=1 /product="polyprotein" /protein_id="AII73773.1" /translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK MLGAVPKGIKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFVASLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAL LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVKPTETQEVNEPEK EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCIALPCRVGMNKNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" gene 5079..6701 /gene="VP1" CDS 5079..6701 /gene="VP1" /codon_start=1 /product="VP1" /protein_id="AII73774.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 6701..7474 /gene="VP2" CDS 6701..7474 /gene="VP2" /codon_start=1 /product="VP2" /protein_id="AII73775.1" /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNGQFLKVDPSPPSSSGSSVSSVKTQ STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa 61 tgacagtaat aacgccaccc cttctaacaa agaagaggtc ggtgcattct ccaacatcaa 121 agttggattc aagaaaatgc tgggtgccgt acccaagggc atcaaagcac ccagcagtgg 181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc 241 aaatggtgaa gacaccgtac agtttgatgc aaagtcagaa actataattg ggttgccaga 301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cattaagtga 361 gagggagcac agaccggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg 421 tgagttttac cattactccg tgtacgtcag cgacggcaaa gctctggggg tccacaaacc 481 accggcggct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc 541 cgtttatacc cccaattact tggtctcccc ggacacatta aagggcctcg ctggtgagaa 601 gttcccctac acggccttca gtaacaactg ttataacttc tgttgctggg tgctagagct 661 caacgacacg tggcttaaca gaagatgcat ttccagaact accggcttct tcaaaccata 721 ccagtcttgg aacaggaaac ctctcccaac cgttgatgat gggaagatca aaaaggtggc 781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg 841 caaactcaag ccattgaatc tactgcactt gctcgcgtct tgtgactgga cgtttgcggg 901 tatagtggag acagtcatct tgatggcaga gcttttcaat gtcttctgga ccccgccaga 961 tgtctctaat tttgtagcct ccctaatagg tgattttgaa ttgcaagggc ctgaggacct 1021 ggctgtggag ctcgtccccg tggttatggg tggcataggg atggttctcg gtttcaccgc 1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct 1141 agggaactat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaagga 1201 agagaaagct gagatggaaa ccttgagggc aatcgaagat gccgtcctgg atatggaagc 1261 tatagggaac aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat 1321 gaagaccctg gatctggagg aggagaaggc taggaaactg tccactaaat catcttcacc 1381 ggacatagtc ggcaccatca atgccatact ggctaggata gctgctgcta gatccctttt 1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtta tgatctcagg 1501 cagacctggc attggaaaaa cccacatggc gagacatttg gctaagagca tcgccaacac 1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggtgtcgatc actgggatgc 1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga 1681 cgccctaaca ctacaagagc tggccgatac atgtccagtc actttaaatt gtgataggat 1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa 1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt 1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat 1921 gtggaaagat cattttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg 1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccctaaccca 2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg agttccagct 2101 ccaagggaat gacctccaaa catacaactt tgacaccaac agagtctccg cattcaggaa 2161 attggctgca gataacaagt atgggatcat ggagacgatg agagtgggtg cggcactcaa 2221 gaatgtgaag accctagaag accttaaaat tgcattgagg gatgtaaaat tcaatgagtg 2281 tgaaataatt tacaagaact ctaagtaccg agtctcttcc aacggtaaag gttcagtttc 2341 tgttgataaa gttgaggaca atgcatccca gactgtaaac gaggtacaat cagcacttct 2401 caggctcagg caagcgaggg ccagatatta tatcagctgc ttccaagacc tcgtctacac 2461 tctcatacag gttgccggag catcattcgt tgtcaacagg atctccagaa ggttctgctg 2521 ggaaaggtgg gtcaaaccga ccgaaaccca ggaggtgaat gagcccgaaa aggaagtggc 2581 acaaggcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaagaa 2641 caagaaagga aggggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga 2701 gtatgacgag ttcaagagaa tcagggaaga aaggaacgga aagtactcca ttgaggaata 2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcga cagaggagga 2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca 2881 gaggaaggag gaaaggggtg tgcttggctt agtcaccggc tcagacatca gaaagaggag 2941 accagatgac ttccaaccaa aaggcaacct atgggcagat gacaccagga gtgtggacta 3001 caatgagagg cttgattttg aagcgccccc gagtgtttgg tcaagaatag tcccattagg 3061 cactggttgg ggattctggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc 3121 taaaggggtt aaggagctct ttggagttga aatcaaacaa atccaagttc ataagtctgg 3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact 3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga 3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac 3361 cgttggtggc cagatgggaa tgcttctcac aggagcaaac gcgaagaaca tggacctcgg 3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgcggcaacg acattgttgt 3481 cgcgggtgtt cataccgcag cagcccgggg aggcaacact gttatatgtg ccacccaagg 3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc 3601 aattctgggc cctggcaagg cgcctaaact cagcacgaag accaagtttt ggcgctcatc 3661 accagatgcc ttgccacctg gtacatatga acctgcttac ctaggaggca aagaccctag 3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga 3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa 3841 tgttctagaa caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc 3901 actggacaaa accacctcta gtggcagtcc ccatcacgtt aagaaaaatg accactggaa 3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga 4021 gcaggctaaa cacgtgcagc ccgtgtatac ggccgcgctc aaagacgagc ttgttaagac 4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat 4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc 4201 tcttccttgc agggtaggaa tgaacaagaa tgaagatggt cccattatat ttgacaaaca 4261 ttctaagtac aggtaccatt atgatgctga ctattctagg tgggactcaa cccaacaaag 4321 gagcattctt tctgccgcta tggaagtaat ggtgcggttc tctgctgaac cagaattggc 4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat 4441 ctcagtccag gagggtctgc catcaggagt cccatgtaca tcacaatgga attcaatagc 4501 acactggatc ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt 4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagca ctgatatcaa 4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggtcttgtcc ccacccggcc 4681 tgataaaact gaaggtcccc tcgtcataac tgaagacctc actggcctga cgttcctccg 4741 taggtcgatt gctcgggacc cagctggctg gtttggaaag ctggaccaag actcaatcct 4801 caggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaaa gcatggttcc 4861 tcactctcag cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc 4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga 4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac 5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg 5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc 5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa 5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc 5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt ggggccagaa ctgaacccct 5341 atctcgctca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg 5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cctccagggt 5461 tcccatatga aaatttgtcg ccttcacaaa tcacaatgtg ccctcatgtt ataattgatg 5521 ttagacaatt agaaccagtt ctactaccta tgccagatat tagaaacaac ttcttccatt 5581 acaatcaggg caatgatcca aaattgagac tgatagctat gctctacacc cctttaaggg 5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggtcctcact aaaccgtcac 5701 ctgattttga gttcacattt ttggtccccc ctacggttga atctaagacc aaacagttca 5761 cattgcccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa 5821 tgatgtacac agccaggaat gagaaccaag ttgtccagcc acagaatggt agggtcacac 5881 ttgatggcga gctattaggt accacaccct tgttggctgt caacatctgc aaattcaagg 5941 gggaggtcat agctaagaat ggagatgtga gatcctatag gatggatatg gaaattacca 6001 acactgatgg caccccaatt gaccccacag aagacacacc tggtcccatt ggttcacctg 6061 actttcaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg 6121 ccacgagagc ccatgaagcc aacattaaca ctggtgggga ccaatacgcc cccaaattgg 6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca 6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat 6301 acggtggaca tctcaccaac aacacccact tggctccagc agtggccccc ttattcccag 6361 gtgagcagat tctgttcttt agatcacaaa tacccagctc aggcggccat gaattgggtt 6421 acatggactg ccttgtccca caagaatggg tccaacactt ctatcaagaa gctgccacag 6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg 6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca cactggtgat aacccaattg 6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg 6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttctttgc 6721 aaatttggca ggaggcgttg cctccaatgg aattagttca cttataaatg ctggggctaa 6781 tgctatcaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc 6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctgc aacaagagat 6901 gattgacata aaacaagggg tgctgacagc tgcgggattc tctcctacag atgccgcgag 6961 gggttctgtc ggcgcgccaa tgacaaaatt agttgattgg agtggcacta gatattgggc 7021 gcctggtgcc atgaggacaa caggctattc agggactttt actcacttgc cccctgtgca 7081 gtctgcttca tatgttaata atcaaaatgg acaatttctt aaagtagatc cttctcctcc 7141 ttcttcgagt ggttcttctg tttcttctgt caaaacacaa tcaactaccc tctcaggcac 7201 ttcaagggtg ggctcctcat ctcagtcaac cctgtcgacc aggccgagca caaggacatc 7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac 7321 aacgtatgta acgccaccat ccagtagggc atcaagtgtc agcacagtct cgaccgtgcc 7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc 7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag gaaagttgat 7501 tagtttgttc ttcctttcta ctattccttt aattctttct ttt //