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Typing tool
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Complete norovirus genomes
KJ196294 | GII.12 | ![]() |
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GII.P12 |
ORF1: 5..5104 ORF2: 5085..6692 ORF3: 6692..7471LOCUS KJ196294 7521 bp RNA linear VRL 10-AUG-2014 DEFINITION Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16, complete genome. ACCESSION KJ196294 VERSION KJ196294.1 KEYWORDS . SOURCE Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16 ORGANISM Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7521) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7521 /organism="Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16" /mol_type="genomic RNA" /isolate="Saitama/KU16" /host="Homo sapiens" /db_xref="taxon:1529911" /geo_loc_name="Japan" /collection_date="2000" /note="genotype: GII.P12_GII.12" CDS 5..5104 /codon_start=1 /product="polyprotein" /protein_id="AII73770.1" /translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKQALKNISINSCQIVYGGCTYKLESDGKGDVKVDRVQNATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMVRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5085..6692 /gene="VP1" CDS 5085..6692 /gene="VP1" /codon_start=1 /product="VP1" /protein_id="AII73771.1" /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGILVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6692..7471 /gene="VP2" CDS 6692..7471 /gene="VP2" /codon_start=1 /product="VP2" /protein_id="AII73772.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTNASHARTVDLTKKTPATPAPASVSRPSSIASTVSTRSTL VSGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaaggc ccccacgacc 181 acccacccca gaactggtca aaaagatccc tcctcctcca cctaacgggg aggatgaacc 241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctca ccactgtcag 301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag 361 ggacgccaag gagccattaa ctggaacaat cctggaaatg tgggacgggg agatctacca 421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat 481 cagcctcgcc aaggttgaac taacaccact ttctctgttc tggagaccag tgtatacacc 541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt tcccctacac 601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg 661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccttacc aagactggaa 721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt 781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc 841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc 901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact 1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaaaatcgg 1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg 1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga 1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa 1261 tcacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga 1321 cctcgaggag gagaaagcta ggaagctctc aaccaagtct gcttcacctg atatcgtggg 1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa 1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat 1501 agggaaaacc caccttgcca gggaattggc caagagaatc gcagcttctc tcacagggga 1561 ccagcgtgtg ggtctcatcc ctcgcaatgg tgttgatcac tgggacgcat ataaaggaga 1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt 1681 acaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccact 1801 ggactatgtc aattttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagatgc 1861 ccctgaggtc gagaaggcaa agcgcgattt cccaggtcaa cctgacatgt ggaagaacgc 1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa 1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat 2041 cgctcgagca tcggggctac tccatgagag gttagatgag tacgagctgc agggcccaac 2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga 2161 aaacaagtac gggttgatgg acacaatgag agttggaaga cagctcaagg atgtcaggac 2221 catgccagag ctcaaacaag cactcaagaa tatctcaatt aatagttgtc agatagtgta 2281 tggtggctgc acctataagc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt 2341 tcagaacgcc actgtacaga ccaacaatga acttgccggt gccctacatc atcttaggtg 2401 tgccagaatt agatattatg tcaagtgtgt tcaggaggcc ctatattcca tcatccaaat 2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctttg 2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc 2581 caaggatgat gacgagttcg ttgtctcatc cgacgacatc aaaaccgagg gcaagaaagg 2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaaat actccataga 2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga 2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag 2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa 2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt 3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt 3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aaacaaattc agatacacaa 3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgacg tgacaggcat 3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ctactcatca agaggccaac 3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg 3361 gcgcactgtt gggggtcaga tgggcatgct cctaacagga tccaacgcca agagtatgga 3421 tctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta 3481 cgtagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac 3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgtgg 3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttctggag 3661 atcatccaca gcaccactcc cacctggtac ctatgagcca gcctaccttg gcggcaagga 3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt 3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat 3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg 3901 cgcatccctc gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg 3961 ctggaatggg gagtccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat 4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt 4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc 4141 gaccatggtc cggtgcgctc gagcgttcgg gggcctgatg gaggaactca aagcacattg 4201 tgtcacacta cccgtcagag taggtatgaa catgaatgag gatggtccta tcatctttga 4261 gagacactcc agatacaaat accattatga tgctgattac tcccggtggg actcaacaca 4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgca 4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt 4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc 4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga 4561 catcatccag gccaactctc tcttttcctt ctacggtgat gatgagattg tgagcacaga 4621 cataaagttg gatccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac 4681 ccgccctgat aagactgagg gaccccttgt tatctctgag gacctgaatg gcctaacctt 4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagttgg aacagagttc 4801 aatactcagg caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca 4921 cggtccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga 5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaaca 5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatggg gagttcacgg 5281 tttcaccccg caactcgccc ggggaagtcc tattaaactt ggaattaggc cccgaactaa 5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcaggtggg gttgaggtgc 5401 aagtactact ggctgggaat gcgttcacag ctggaatatt ggtgtttgcc gcagttcccc 5461 ctcattttcc actagaaaac ataagccctg gtcagataac tatgttccct catgtaatta 5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc agatgttagg aataatttct 5581 ttcattataa tcaacagaat gaaccgagga tgagactcgt ggcaatgctt tatactcccc 5641 ttagatctaa tggttctggt gatgatgtat ttactgtctc ttgcagggtg ctcacccgac 5701 cttcccctga ttttgatttt aattacttgg tcccccctac cgttgaatct aaaactaaac 5761 ccttcacact ccctatcttg actatagggg agttgaccaa ctccaggttc cctgtgccca 5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aatgggagat 5881 gcgcgctaga tggggagctg cagggcacga cccagctcct ccccacggcg atttgctcat 5941 tcaggggccg gatcaatcag aaggtgagtg gagaaaacca tgtttggaat atgcaggtca 6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc 6061 cagatttctc tggcaagctc tttggtgtac taagccagag ggaccatgat aatgcctgta 6121 gaagtcatga tgcagtaatt gcaaccaact ctgccaaatt tactccaaaa ttgggcgcta 6181 tacaaattgg cacatgggaa caagacgatg tgcacatcaa ccaacctact aagtttactc 6241 cagttggctt gtttgaaaat gaaggtttca accagtggac actccccaat tactcaggag 6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa 6361 tccttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt 6421 gtctcttgcc ccaagagtgg atccaacatc tttaccaaga gtcggcccct tcacaatcag 6481 atgtggcatt gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat 6541 tacacaggag tggttacatt acagtggcca atactggtag cagaccaatt gtggtgccag 6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg 6661 gaactggaaa tgggcgcagg agggtgcaat aatggctgga gcttttatag cagggcttgc 6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa 6781 tcaaaaagta gactttgaaa ataacaagca actacagcag gcttctttca accatgataa 6841 agagatgctg caagctcaag tccaggccac taaacagctg caggctgata tgattgcaat 6901 cagacaaggg gtgttgaccg cgggcggctt ctcccctact gacgcagcaa gaggggcagt 6961 taatgcacct atgactcagg tcttagactg gaatgggacc aggcattggg cccccggagc 7021 cacgaaaacc actgctttct ccggtggatt caccaatgct tctcacgcca gaactgtcga 7081 cctgaccaag aagacaccag ccacaccagc ccctgcgtct gtttctagac ctagctctat 7141 tgcctctaca gtctccaccc gctcaacctt ggttagcggg tcttctaacc cttcttcttc 7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga 7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacacacagc 7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa 7381 agaggttttg gactcctgga catctgcatt taacacccgc agacaaccgc tattcgctca 7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat gatctttatt ttctttcctt 7501 tgaagattct ttttgtcttt t //