Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196294 | GII.12 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS KJ196294 7521 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16, complete
genome.
ACCESSION KJ196294
VERSION KJ196294.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16
ORGANISM Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus
GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16"
/mol_type="genomic RNA"
/isolate="Saitama/KU16"
/host="Homo sapiens"
/db_xref="taxon:1529911"
/country="Japan"
/collection_date="2000"
/note="genotype: GII.P12_GII.12"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AII73770.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISINSCQIVYGGCTYKLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMVRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6692
/gene="VP1"
CDS 5085..6692
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73771.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGILVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6692..7471
/gene="VP2"
CDS 6692..7471
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73772.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATKTTAFSGGFTNASHARTVDLTKKTPATPAPASVSRPSSIASTVSTRSTL
VSGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaaggc ccccacgacc
181 acccacccca gaactggtca aaaagatccc tcctcctcca cctaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctca ccactgtcag
301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgccaag gagccattaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ttctctgttc tggagaccag tgtatacacc
541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccttacc aagactggaa
721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaaaatcgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 tcacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga
1321 cctcgaggag gagaaagcta ggaagctctc aaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatc gcagcttctc tcacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg tgttgatcac tgggacgcat ataaaggaga
1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagatgc
1861 ccctgaggtc gagaaggcaa agcgcgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgctcgagca tcggggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac gggttgatgg acacaatgag agttggaaga cagctcaagg atgtcaggac
2221 catgccagag ctcaaacaag cactcaagaa tatctcaatt aatagttgtc agatagtgta
2281 tggtggctgc acctataagc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga acttgccggt gccctacatc atcttaggtg
2401 tgccagaatt agatattatg tcaagtgtgt tcaggaggcc ctatattcca tcatccaaat
2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaaat actccataga
2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aaacaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgacg tgacaggcat
3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ctactcatca agaggccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt gggggtcaga tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 tctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgtgg
3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttctggag
3661 atcatccaca gcaccactcc cacctggtac ctatgagcca gcctaccttg gcggcaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctc gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaatggg gagtccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
4141 gaccatggtc cggtgcgctc gagcgttcgg gggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa catgaatgag gatggtccta tcatctttga
4261 gagacactcc agatacaaat accattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgca
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga
4561 catcatccag gccaactctc tcttttcctt ctacggtgat gatgagattg tgagcacaga
4621 cataaagttg gatccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgat aagactgagg gaccccttgt tatctctgag gacctgaatg gcctaacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagttgg aacagagttc
4801 aatactcagg caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggtccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaaca
5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatggg gagttcacgg
5281 tttcaccccg caactcgccc ggggaagtcc tattaaactt ggaattaggc cccgaactaa
5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcaggtggg gttgaggtgc
5401 aagtactact ggctgggaat gcgttcacag ctggaatatt ggtgtttgcc gcagttcccc
5461 ctcattttcc actagaaaac ataagccctg gtcagataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc agatgttagg aataatttct
5581 ttcattataa tcaacagaat gaaccgagga tgagactcgt ggcaatgctt tatactcccc
5641 ttagatctaa tggttctggt gatgatgtat ttactgtctc ttgcagggtg ctcacccgac
5701 cttcccctga ttttgatttt aattacttgg tcccccctac cgttgaatct aaaactaaac
5761 ccttcacact ccctatcttg actatagggg agttgaccaa ctccaggttc cctgtgccca
5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aatgggagat
5881 gcgcgctaga tggggagctg cagggcacga cccagctcct ccccacggcg atttgctcat
5941 tcaggggccg gatcaatcag aaggtgagtg gagaaaacca tgtttggaat atgcaggtca
6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc
6061 cagatttctc tggcaagctc tttggtgtac taagccagag ggaccatgat aatgcctgta
6121 gaagtcatga tgcagtaatt gcaaccaact ctgccaaatt tactccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa caagacgatg tgcacatcaa ccaacctact aagtttactc
6241 cagttggctt gtttgaaaat gaaggtttca accagtggac actccccaat tactcaggag
6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa
6361 tccttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
6421 gtctcttgcc ccaagagtgg atccaacatc tttaccaaga gtcggcccct tcacaatcag
6481 atgtggcatt gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
6541 tacacaggag tggttacatt acagtggcca atactggtag cagaccaatt gtggtgccag
6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg
6661 gaactggaaa tgggcgcagg agggtgcaat aatggctgga gcttttatag cagggcttgc
6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa
6781 tcaaaaagta gactttgaaa ataacaagca actacagcag gcttctttca accatgataa
6841 agagatgctg caagctcaag tccaggccac taaacagctg caggctgata tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccctact gacgcagcaa gaggggcagt
6961 taatgcacct atgactcagg tcttagactg gaatgggacc aggcattggg cccccggagc
7021 cacgaaaacc actgctttct ccggtggatt caccaatgct tctcacgcca gaactgtcga
7081 cctgaccaag aagacaccag ccacaccagc ccctgcgtct gtttctagac ctagctctat
7141 tgcctctaca gtctccaccc gctcaacctt ggttagcggg tcttctaacc cttcttcttc
7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga
7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacacacagc
7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcatt taacacccgc agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat gatctttatt ttctttcctt
7501 tgaagattct ttttgtcttt t
//