Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196290 | GIX.1 | |
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| GII.P15 |
ORF1: 5..5101
ORF2: 5082..6749
ORF3: 6749..7480
LOCUS KJ196290 7551 bp RNA linear VRL 16-OCT-2020
DEFINITION Sapporo-HK299 virus, complete genome.
ACCESSION KJ196290
VERSION KJ196290.1
KEYWORDS .
SOURCE Sapporo-HK299 virus
ORGANISM Sapporo-HK299 virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7551)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7551
/organism="Sapporo-HK299 virus"
/mol_type="genomic RNA"
/isolate="Sapporo/HK299"
/host="Homo sapiens"
/db_xref="taxon:2779846"
/country="Japan"
/collection_date="2007"
/note="genotype: GII.P15_GII.15"
CDS 5..5101
/codon_start=1
/product="polyprotein"
/protein_id="AII73758.1"
/translation="MRMASSDVATAFGSQKATNDSYNTPPPNKEEASVLTNVKVGFKK
ILGAVPKASRQHGNTQKPSTVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFNNNCYNFCCWVLD
LNDSWLNRRSINRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPENLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS
SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLISLERVLPKGVSELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLCTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMSEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
gene 5082..6749
/gene="VP1"
CDS 5082..6749
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73759.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSV
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6749..7480
/gene="VP2"
CDS 6749..7480
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73760.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV
PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVKKRGQSQV"
ORIGIN
1 gtgaatgagg atggcgtcga gtgacgtcgc tactgccttt ggcagccaga aagctaccaa
61 tgacagctat aacacacccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa
121 agttggtttt aagaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacac
181 acaaaaaccg tcgaccgttg agatcgatgg tgtggccatg cgtgtgccct ctcccccccc
241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga
301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cactgagtga
361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaaa tgtgggatgg
421 tgagttctac cactactcca tatatgtgga caatggcaag gcccttggtg tgcacaaacc
481 accagcagca atcagccttg caacgataga tttaacacct atatcgttgt attggagacc
541 ggtgtataca ccgccgtacc ttgtccaccc agagacactc aaagggctgg ctggtgaaaa
601 gtttccctat acagctttca acaacaactg ctacaacttc tgttgctggg ttctggacct
661 caatgattca tggttgaatc ggaggtccat aaacaggaca actggatttt tcaaacccta
721 ccaagcctgg aacaggaagc ccctcccaac tgtggatgat ggtaagatca agaaggttgc
781 gaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccatcaagg acctccttgg
841 gaagctaaaa ccccttaacc tcctaaatct gctcgcatca tgtgactgga cctttgctgg
901 tgtagtagaa acagttattc ttgcagcaga gctcttcaat gtcttttgga ccccccctga
961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaaaacct
1021 cgctgtggag cttgtccccg ttatcatggg aggcattggc atggtgttag gattcacagc
1081 tgagaagata gggcgcatgt tgtcatctgc agcatccact cttagagctt gtaaggatct
1141 tggtaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga
1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc
1261 aattggcaac aaccatctca caacattgct caaagacaag gacagcctaa acgcctacat
1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc
1381 cgacattgtt ggcaccatca acgcaatcct tgcccgcatc gccgcagcaa gatcactcct
1441 gcataaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtaa tggtctccgg
1501 gagaccaggg atcgggaaga cttacctggc tagacaactt gctaagtcaa tagcaagcag
1561 catgagtggt gatcagaggg taggacttgt cccccgcaat ggtgttgacc attgggacgc
1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga
1681 cgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacaggat
1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa
1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt agacgaattg acttccttgt
1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat
1921 gtggcgtgac catttcaaag ctgattcgtc acatataaag ttgtcattag ccccacaggg
1981 tggtttcgac aaaaacggaa acacccctca tgggaagggc accatgaaaa ccctcacgct
2041 gcattcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggacg agttccaatt
2101 gcagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa
2161 attggcagct gacaacaagt atagttttgt ggagacaatg aaagttggtg cggtcctcaa
2221 gaatgtgcga accctggagg acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg
2281 tgaaataatc tacaaagggg ctaagtacag ggtcgcctcg gatggctgtg gcagtgtctc
2341 ggtctccaag atcaaggatg ttgcatcaca gacagccaat gaagtgcata cagcgctcct
2401 gagactgagg caggcccggg ccagatatta catcagctgc ttccaagatc ttatctatac
2461 actgatccag gttgctggag cctcatttgt ggtgcacagg atctcaaaga gattctcctg
2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccta gcagtgagga
2581 ggccacagga agatgggaaa ttgagccaaa ggacacagac cctgaaggta agaagggtaa
2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga
2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga
2761 atacctccag gaccgtgata gattttatga ggaagtggca gtcgcaaggg ccacggaaga
2821 agacttctgt gaagaagagg tggcaaaaat tagacagaga attttcagac ccacaaagaa
2881 acagaggaag gaggaacggg gcgtccttgg actagtcacc ggttcggaaa tcaggaagag
2941 aagaccagat gacttccaac ccaaaggtaa tttgtgggct gatgacacca ggagcgtgga
3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct
3061 tggtactggt tggggtttct gggtctcctc caacctcctc atctctctgg aacgagtcct
3121 gccaaaagga gtgagtgagc tgttcggagt tgacatcaaa caaattcaga tacacaagtc
3181 aggtgagttt tgcaggttca ggtttccaag acctatcaga ccagatgtca caggcctcat
3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatc ctcgtcaaaa gaccgactgg
3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag
3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct
3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt
3481 ggtagctggg gttcacaccg cagctgcaag gggtggcaac actgtgatct gtgccacgca
3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc
3601 cccaatactt ggacttggga aggcccctaa gctctgcact aaaacaaagt tctggcgttc
3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc
3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac
3781 cgaacccaga ggaaaaccgc caaagcccag cgttctcgat gaggcaaaga aaactgtgat
3841 gaatgtgttg gagcaaacca taaaccctgc caaaccctgg tcatactcac aagcatgtgc
3901 ctcacttgac aaaacgactt caagtggtag cccacaccac ctaaggaaga atgatcactg
3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta
4021 tgaacaggca aaacacgtga gccccgttta caccgcagcc ctcaaagatg aactagtcaa
4081 gactgacaag atttataata agataaagaa gaggttgcta tggggttctg acctgggtac
4141 catggtcagg tgtgccagag cctttggtgg gttaatggac agcatgaaag agagttgtgt
4201 gatgttgccc tgcagagttg gaatgaatat gaatgaggat gggccaatca tttttgacaa
4261 acatgcaaaa tataaatacc actatgatgc agactactcc agatgggact ccacgcagca
4321 aagatgcatc ttgtctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaatt
4381 ggcacaggtg gtggctgaag acctactcgc cccgagccaa ctcgacgtgg gcgattttgt
4441 ggtgtcagtt caggaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat
4501 agcacactgg atcattaccc ttagtgcaat gtcagaagtc tctggtctct ccccagatgt
4561 gatccaagcc cactcatgct tctcttttta tggtgatgat gagatagtta gcacagatat
4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag
4681 accagacaaa actgagggcc cactagtcat tacagagaac ctccacgggt tgaccttcct
4741 acgcaggcac atcacacgag accctgctgg atggtttggt aagttagacc aggattcaat
4801 tttgagacag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt
4861 tccgcactca cagcgcgcga cccagctaat ggcgttgttg ggtgaggcat cgctacacgg
4921 tccccagttt tacaagaaag ttagcaagat ggtcatcaat gagatcaaaa gtggtggtct
4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag
5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg
5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt tccagagagt caacaagaag
5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgttgca gggcaaagta
5221 acataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg
5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa
5341 acccctatct caaccacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg
5401 aagttgttct tgccgggaat gcgttcacgg caggtaagat cttgtttgca gctgtgcccc
5461 ccagcttccc aacccatggt atctctgcag cacaggctac tatgctaccc catgtgattg
5521 tggatgtcag gcagttggag cctgttcggc tccccctccc tgacgtcagg aatgtgatgt
5581 ttcacttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc
5641 ctctccgtgc caacggagct ggtgatgatg ttttcaccgt ctcatgtcgt gtgctaacaa
5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga
5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcccacag
5821 gtatcacaca gctttatacc agtccaaaca ccaatttggt tgtccagttc caaaatggca
5881 ggtgcctact tgatggtaca cttcttggta ctacccctgt cagagctgct gacatctgca
5941 gttttagagg ggtcacatca actgaagtag atgcaactga cagccccagg gtggcagggt
6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc
6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc accctcagtc
6121 aaagaaacac tggtggagct gggcagaatt ctaacagagc ccacttcgca tatttctaca
6181 caagaaaccc cacctttgca ccaggcatag ggactgttgt attttctttt gacaccactg
6241 attttcaaaa tcgtcaacct accaaatttt ccccttctgg tgtgtttgat gatgattctt
6301 ctgaaccttt caatcagttt tccctgccat attataatgg atcactcggt gcagtggacg
6361 ctggaaaact ggctccacct gtggcaccca attatccagg tgagcagatt ctttatttca
6421 gagggagtgt acctttcaaa ggtggttatg gagaaggtga gattgacagt ttgcttcccc
6481 aggaatggat tacccatttc tatgcagagc aggcccccac acaaggtgac gcagccctgc
6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc catcgtgaag
6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtgccggtc aatggagtct
6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg
6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc
6781 tgatgttctt ggcagcggtt tatcttctct tattggtgcc ggtgccaatg ctataaacca
6841 gaaagttgaa tatgattaca ataggcattt gcaatcagct tctttccaac atgataagga
6901 catgctcagt tcacaggtgg aagccacaaa acacctgcag agggaaatga tggccatcaa
6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa
7021 cgctcctatg acacaaatct tggactggaa tggcaccaga tattgggccc caggtgcaat
7081 gaaaaccacg gcctactcag gtcgttttgt cagccaatcc actcacaggc ccattcccaa
7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctatctc
7201 ttctctttcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtacttc
7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggttctct
7321 tcaaactgct tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac
7381 agtcccacat tatgttttag attcatggac cccttctttt aacactaagc atttacccct
7441 gtttgcccac gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggttttat
7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t
//