Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196288 | GII.5 | |
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| GII.P5 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7477
LOCUS KJ196288 7512 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52, complete genome.
ACCESSION KJ196288
VERSION KJ196288.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52
ORGANISM Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7512)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus
GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52"
/mol_type="genomic RNA"
/isolate="Saitama/T52"
/host="Homo sapiens"
/db_xref="taxon:1529917"
/country="Japan"
/collection_date="2002"
/note="genotype: GII.P5_GII.5"
CDS 5..5098
/codon_start=1
/product="polyprotein"
/protein_id="AII73752.1"
/translation="MKMASNDASVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPVPRDNSQKPPRPPTPELIKNMPPPPPNGEDEPTVRYEVTKGVSGLPELTTVTQPD
STNTGFSVPPLSQRENKEAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MAKVEMTPLSLYWRVVYTPQYLISPDTLRRLDGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
IRPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEASELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMMSGRPGIGKTHLAREV
AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPAITTFNFDRNKIAAFRQLAAENKYGIMDTMRIGNQLKGVKTM
EELKQAIKNVSIKKCQIIYNGSTFSLESDGKGKVLVEKIKSATIQTSNELAGALRHLR
SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWAKPPIDQGESEPKEENP
KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPSGVTEVFGVPVKQVQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEGTV
ATILIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHTRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MVRCARAFGGLMEEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAAMEIMVRFSAEPQLSQKVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
WNSITHWLLTLCALSETTNLSPDIIQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5079..6701
/gene="VP1"
CDS 5079..6701
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73753.1"
/translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
QLQACNICSIRGKVTGQVPNEQHMWNLQITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 6701..7477
/gene="VP2"
CDS 6701..7477
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73754.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNLTNSTQS
TVVSTSSLPPPRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcgggtg aaggcttgtt tacaaacatg tcttctaccc taaagaaagc
121 cctcggggca cggcctaaac agcctgtccc gagggacaac tcacaaaaac caccaaggcc
181 tcccacgcct gagctgatta aaaatatgcc cccccccccg cctaacggtg aagacgagcc
241 aaccgttagg tacgaagtta caaaaggggt ctccggccta cctgagctca cgacagtcac
301 acaaccagac tcaaccaaca cggggtttag tgtccccccg ttgagtcaaa gagagaacaa
361 ggaagctaag gagccactga ccggggcaat actggaaatg tgggatggag agatttacca
421 ctatggtttg tatgtggaga aaggtctcgt gctgggtgtg cacaaaccac ccgcagccat
481 aagcatggcg aaggtggaaa tgacaccgct ttcgttatac tggcgtgtgg tgtacacccc
541 ccagtacctc atttcccctg acacgctcag gagactcgac ggagaggcgt ttccatatac
601 cgcatttgac aacaattgtt acgccttttg ctgctgggtg ttagacctta atgattcatg
661 gcttagtagg agaatggtgc aaagaacaac aggcttcttc aggccctacc aggagtggaa
721 cagaaaacct ttgcccacca tggatgattc caagatcaag aaagtggcga acatattttt
781 atgctcttta tccacactat tcactaggcc tattaaagac attattggga aaattagacc
841 attaaatatt ttaaacattc tggcaacatg tgattggacg ttcgccggga ttgtggagtc
901 gctaatcttg tttgctgagc tctttggagt gttctggaca cccccagatg tgtctgcaat
961 gattgccccc ctacttggtg actacgagtt acaaggacct gaagacatcg ctgtcgaact
1021 cgtacccgtg gtaatgggag gaatcggttt ggtgttaggc ttcaccaaag agaagatagg
1081 caagatgttg tcttcagcag catcaacact cagagcctgt aaagaccttg gggcctatgg
1141 attggaaata ctcaagctgg tcatgaaatg gttcttcccc aagaaagaag aagctagtga
1201 gctggccatg gtgagggcta tagaagatgc cgtgttggac cttgaggcaa tagaaaacaa
1261 ccacatgaca gcactgctca aagacaaaga cagtctcgca acctacatga gaacactgga
1321 ccttgaggaa gaaaaagcca ggaagttgtc caccaagtcc gcatcccctg acatagttgg
1381 gacaattaac gccctgttag cccggatagc ggcagccagg tcactggttc acagggccaa
1441 ggaggaactg tctagtagaa ttaggccagt tgttgtcatg atgtctggta gaccaggtat
1501 agggaagaca cacctggcca gggaagtggc aaagaaggtg gcatctaccc tcacagggga
1561 ccagagggtt ggactcatac caaggaatgg tgtggaccat tgggatgcat acaagggcga
1621 aagggtcgtg ctatgggacg actatggcat gagtaacccc attcatgatg ccctgcgcct
1681 gcaggagctg gccgacacat gtcccttaac attaaattgt gacagaattg agaataaagg
1741 aaaggtgttt gatagtgatg ttataatcat tacaacgaac cttgcaaacc cagcccctct
1801 tgattatgtc aactttgagg cttgctccag gcgcattgac ttcctggttt atgccgaagc
1861 accggaagta gaaaaggcaa agcgagactt ccccggccag ccagacatgt ggaaagatgc
1921 ttttaaatca gatttctcac atattaaatt acaacttgca ccccagggag gcttcgacaa
1981 aaatgggaac accccacatg gaaaaggtgt gatgaaaaca ctcaccactg gctctctgat
2041 cgctagggcg tcgggcctcc tacacgaaag aatggacgag ttcgaactcc agggcccagc
2101 aatcaccact ttcaacttcg accgtaacaa aattgccgcg ttcagacaat tggctgcgga
2161 aaataaatat ggaataatgg acaccatgcg gattggcaac caactgaaag gggtgaaaac
2221 catggaagaa cttaaacagg caattaagaa tgtgtccatc aaaaagtgcc aaataatcta
2281 taatggctct acattcagtc ttgagtctga tggcaaaggc aaggttttgg tagagaagat
2341 caaaagtgcc actattcaaa ccagtaatga actggctggg gctctgcgcc acctcaggag
2401 tgccagaata aggtattatg tgaaatgtgt gcaagaagct atctactcta ttcttcagat
2461 tgctggtgcc gcattcgtca ccacgcgcat tgcacgccgc atgaacatac aagaactctg
2521 ggcaaaacca ccaatagacc agggtgaatc agagcccaaa gaagagaacc ctaagttgga
2581 ggacgatgaa ttcatcatat catctaagga catcaaggaa gaaggcaaga agggcaagaa
2641 caaaactggc cgtggcaaga aacacaccgc attctccagc aagggtctaa gtgatgagga
2701 gtatgatgag tacaagagga taagagagga aagaaatggt aagtactcta ttgaagaata
2761 cctccaggac agagacagat actacgagga gcttgccatt gctaaggcta ctgaagagga
2821 cttctgtgag gaagaggaga tcaaaattcg ccagaggatc tttcgcccca caagaaaaca
2881 gagaaaggaa gaaagggcta cgttgggact ggtgactggt tcagaaatca ggaagaggaa
2941 ccctgatgat tttaagccca aaggaaagct gtgggccgac gacaacagaa gtgtcgatta
3001 caacgaaaaa ctggatttcg aggctccccc gagcatctgg tctagaatcg tcagttttgg
3061 ctcaggttgg ggtttctggg tgtcaccaag cctgtttata acatcaactc acgtgatccc
3121 ttctggtgta acagaggtat tcggcgtgcc cgttaagcaa gtccaaattc acaagtcagg
3181 cgaattttgc cgtttcagat ttccaaaacc aatcaggaca gatgtgacag gaatgatcct
3241 agaagaggga gccccagaag gcaccgtggc aaccatcctc atcaaacgcc ccaccggcga
3301 actcatgcca cttgctgcca gaatggggac gcacgcgacc atgaaaattc agggacgcat
3361 ggtcggtgga cagatgggca tgttgctcac cggttcgaac gccaaaggca tggatttagg
3421 gacaactccc ggagactgcg gctgcccata tatttacaag agaggtaacg attacatcgt
3481 tatcggagtc cacacagcag ccgcccgcgg agggaacact gtcatctgtg ctacacaagg
3541 gagtgaaggt gaagcaacac ttgagggtgg agatgacaaa ggaacatatt gtggggcacc
3601 catcctcggt cctggtgggg caccaaaatt gagcaccaag accaagttct ggaggtcatc
3661 aaacacaccc ctcccaccgg gaacatatga acctgcttac cttgggggcc gcgacccacg
3721 tgttaagggc gggccctccc tgcaacaagt catgagggac caactgaaac cattcaccga
3781 acccaggggc aaacctccaa agcctagtgt cctagaggca gccaaacaaa ccatcattaa
3841 cgtcctggaa cagaccctgg atcccccaca aaagtggact tacgcacaag cgtgtgcgtc
3901 acttgacaaa accacctcca gcgggcaccc ccaccacacc cgaaagaatg agttttggaa
3961 cggagagact ttcaccggca aactggcaga tcaagcgtca aaagcgaacc taatgtttga
4021 ggaagggaaa cacatgacac cagtgtacac ggcagccctt aaggatgagc tagtcaagac
4081 agacaagatt tatgggaaga tcaagaaaag gttgctgtgg ggttctgatc tgtccaccat
4141 ggttcggtgt gcaagagctt ttggggggct catggaggag atgaaggctc actgcatatc
4201 actcccagtc cgggttggca tgaatatgaa tgaagatggt ccaataatat ttgagaagca
4261 ttccaggtat aaataccatt atgatgcaga ttactcccga tgggactcca cccaacagag
4321 agctgtgtta gctgcagcta tggaaataat ggttagattc tctgctgaac cacaactatc
4381 acaaaaagtg gctgaagatt tgttggcccc cagtgtggtg gacgttggag actttaaaat
4441 ttcaataaat gaagggcttc catccggtgt cccgtgcacc tcacagtgga attccatcac
4501 acattggctt ctaactctct gtgctctgtc tgaaaccacc aacctgtctc ctgacatcat
4561 acaggcaaat tccatgttct cattctatgg tgatgacgag atcgttagca ccgatataaa
4621 attggaccca gaaaaattga ccacaaaatt gagagagtat ggtttgaaac cgacccgtcc
4681 ggacaaaaca gagggacctc taattattag tgaggatttg gatggactca ccttcctccg
4741 aagaacagtc tcccgtgatc cagctggctg gtttgggaaa ttggaccaaa gttcaatact
4801 caggcaaatg tactggacca gaggacccaa ccatgaagac cccaatgaaa caatgatacc
4861 tcactctcag aggcccatac aactcatggc cctacttggt gaagcctctc tacacgggcc
4921 ctccttctac agcaaaatta gcaaattggt cataactgaa ctcaaggaag gtggaatgga
4981 tttttacgtg ccaagacaag agcctatgtt caggtggatg aggttctctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ctactccatc aaatgatggt gccgccggcc tcgtgccaga aagtaataat gaggcaatgg
5161 ctctggaacc cgtggtgggg gcgtctttag ccgcccctgt cactggccaa actaatataa
5221 tagacccctg gattagaact aattttgtcc aagcccctaa tggtgaattc acagtttccc
5281 ctagaaattc ccctggagag atattggtca atttggagtt aggtccagaa ctgaaccctt
5341 atctggcaca tttagctagg atgtacaatg gttatgcggg tggtatggaa gtgcaagtga
5401 tgctcgcggg gaacgcgttc accgctggca agattatctt tgccgccgtg ccaccttact
5461 ttccagtgga aaatcttagc ccttcccaaa taacaatgtt cccacatgtg ataatcgatg
5521 ttagaacctt ggaacctgtg ttgctcccaa tgcctgatgt cagaagtacc cttttccact
5581 ttaatcaaaa ggatgaacct aagatgagac ttgttgccat gctttacacc cctcttcgtt
5641 ctaatggttc tggtgacgac gttttcaccg tctcatgtag gattctcact aggccctccc
5701 ctgaatttga ttttacatat ttggtaccac caacagtgga atcaaagact aagccattca
5761 cactacctgt gctaacactg ggagaactgt ccaactctag atttcctctc tctattgatg
5821 aaatggtcac cagtcccaat gagtccatag ttgttcagcc acagaatggt agggtcacac
5881 tagatgggga gctgttaggc acaacccaac tgcaagcatg caacatttgt tccataaggg
5941 ggaaggtgac agggcaggtc cctaatgaac aacacatgtg gaacctgcag atcacaaacc
6001 taaatgggac gcaatttgac cctacagatg atgtcccagc cccccttggt gtgcccgatt
6061 ttgcaggtga ggtctttggt gtactcagcc agagaaacag aggtgaaagc aacccagcaa
6121 acagggctca tgatgctgtc gtggccacct acagtgacaa gtacacccct aaattgggct
6181 tagtgcaaat tggaacttgg aacaccaatg atgttgaaaa ccagccaaca aaattcaccc
6241 caattggttt aaatgaggtc gctaatggcc atcgatttga acagtggact ttgcctaggt
6301 attctggtgc cctgacatta aatatgaatt tagcccctgc tgtggccccg ctcttccctg
6361 gagagcgtct tcttttcttc cgctcttacg tcccattaaa aggtggattt ggaaaccctg
6421 ctatagattg tctggtgcct caggagtggg tccaacattt ctatcaggaa tctgccccct
6481 ctctggggga tgtggcctta gtcaggtacg tcaacccaga caccgggcgc gtactttttg
6541 aggccaaact ccacaaaggt gggttcctga ctgtgtcaag tactagcaca gggcctgttg
6601 tggttccagc caatggctat ttcagatttg actcctgggt caatcaattt tactctcttg
6661 cccccatggg aactgggaat gggcgcagaa ggtttcagta atggcgggag ctttcatagc
6721 aggtttagca ggtgatgtgc ttagtaatgg cctcggttca ctgattaatg ccggagccaa
6781 tgctattaat caaagagcag agtttgattt taataggcaa ttgcaacaaa attctttcaa
6841 tcatgataag gagatgttaa atgcccaaat tcaagcaaca aaacagttgc aggctgatat
6901 gatagcaatc aaacagggag tcctagctgc tgggggtttc tcgccgaccg atgcagccag
6961 aggagctgtt aatgcaccca tgacccaagc actagattgg agtggcacta ggtactgggc
7021 ccctggttca atgaagacca ccagctattc tggaaagttt gtatccatga atcctgttag
7081 gcaggttgag ttcccgcagc ccaaaaagag tgcggccata ccatcaagcg ccagctctgt
7141 gtcctctggt aggaccaatt tgacaaattc cacccaatca actgttgtca gtacttcctc
7201 actgccacct cctaggggct cttctgcccc ttctactctg tcaagggcca caaccagaac
7261 ttctaattgg gttgaggaac aaaacaggaa tttggaaccc tacatgaggg gtgcccttca
7321 aacaacattt gtcacccccc cttccagccg ggcatctagc aatggaacag tctcaactgt
7381 accaaaaggt gttttggact cctggacacc tgcgtttaac acccgcaggc agccgctttt
7441 tgcttacctt cgtaagaagg gggagtcaca agtttagtga aaagataatt aatgattaat
7501 aattgatctt tt
//