Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196286 | GII.17 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6704
ORF3: 6704..7480
LOCUS KJ196286 7535 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87, complete
genome.
ACCESSION KJ196286
VERSION KJ196286.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
ORGANISM Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7535)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7535
/organism="Norovirus
GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87"
/mol_type="genomic RNA"
/isolate="Saitama/T87"
/host="Homo sapiens"
/db_xref="taxon:1529916"
/country="Japan"
/collection_date="2002"
/note="genotype: GII.P16_GII.17"
CDS 5..5101
/codon_start=1
/product="polyprotein"
/protein_id="AII73746.1"
/translation="MKMASNDASVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRFEVKSGISGLPELTTVPQP
DVTNTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVEMTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGPE
DIAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVTIKRCQIIYNGSTFDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
RSARIRYYVKCVQEAVYSILQIAGAAFVTTRIARRMNIQELWSKPTLDQSEPEAREEA
PKLEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQVQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPNVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFVGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSITHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLRE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5082..6704
/gene="VP1"
CDS 5082..6704
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73747.1"
/translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRLTADVDGSHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
GVASQRNVGSNPNTTRAHEAVISTTSSQFVPKLGSVNFGSTSTDFQLQQPTKFTPVGI
KIESGHEFDQWALPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGVSDGVID
CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6704..7480
/gene="VP2"
CDS 6704..7480
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73748.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAITQKVDFENNKQLQAA
SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGTVGAPMTKVLDWSG
TRYWAPNSTRTTGYSGQFTSTPLHTPVKTSQPAPAKRTQPLSSSSGSIYSLSTQSTVL
TKPSSGSSVSSASTQSTKLSSVSSMDRTADWVNQQRSLSPYMRGALNISHVTPPSSRA
SSSGTVSTVPKEVLDSWTPAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc
121 cctcggggct cggcccaaac agcctgcccc gagggacaac tcacaaaagc ccccaagacc
181 accaacgccc gagttggtta agaggatacc ccctccccca cctaatggcg aagaagaaga
241 accagtcatt aggtttgagg ttaagagtgg aatctctggc ctgcccgagc tcacgacagt
301 tccccaaccg gatgtgacca acacggcatt cagtgttccg ccgctgagct tgagagaaaa
361 cagagaggcc aaggaaccgc tgactggggc aatactagag atgtgggatg gagagatata
421 ccactatggc ttgtatgtgg agaaaggctt ggtgttgggt gtacacaaac cacctgcagc
481 tataagtatg gcgaaagtgg aaatgacgcc gctgtcgtta tactggcgtg tggtgtatac
541 cccccaatac ctcatctccc ctgaaactct caagaggctc aacggagagg cattccctta
601 tactgccttt gataacaact gttatgcctt ttgctgctgg gtgttagacc ttaatgactc
661 atggctcagc agaaggatgg tacaaagaac aacaggcttc tttagaccct accaagagtg
721 gaacagaaaa cccctaccca ctatggatga ctccaaaatt aagaaggtgg caaacatatt
781 cttatgttca ttgtccacgc tgttcaccag acctataaaa gacatcatag ggaaaattaa
841 accattaaat atcttgaaca ttctggcaac gtgtgactgg acgtttgccg gaatcgtaga
901 gtctctaata ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccctacttg gcgaatacga gttgcaaggg ccagaagaca tcgccgttga
1021 gctcgtacct gtagtaatgg gagggattgg tttggtgcta ggattcacca aagagaaaat
1081 tggcaaaatg ctatcctcag cagcgtcaac gctcagggct tgcaaagatc ttggtgccta
1141 tggtttagag atactcaaat tagtcatgaa atggtttttc ccaaagaaag aagaggccaa
1201 tgaactagcc atggtgagag caatagagga tgctgtgctg gatcttgagg cgatagaaaa
1261 caaccacatg acagctctgc tgaaagacaa agacagcctt gcaacctaca tgaaaacact
1321 ggatctagag gaagagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 tgggacaatc aatgccctgt tggctcgaat agcggcagct agatcactag tccacagggc
1441 caaggaggag ctatctagca ggatcagacc agttgttgtt atgatatctg gcaagccagg
1501 gataggcaag actcacctgg ccagggaggt ggcaagaaag gtggcatcca ctctcacggg
1561 ggatcaaaga gtcggactca taccgagaaa cggtgtggac cattgggacg catacaaagg
1621 cgagagggtc gtgttgtggg acgactatgg catgagcaac cctattcatg atgccctgcg
1681 catacaggaa ttggccgaca cgtgtcccct caccttaaat tgtgatagaa ttgaaaacaa
1741 gggaaaagtt tttgatagtg aagtcataat aatcacaaca aacctcgcca atccagctcc
1801 tcttgattat gtcaactttg aggcctgttc caggagaatt gatttcctgg tgtacgccga
1861 agcaccagaa gtggagaagg caaaacgaga cttccctggt caaccagata tgtggaagga
1921 cgctttcaaa gcggactttt cgcatatcaa gttacaactt gcgcctcagg gcggctttga
1981 caagaatggc aacaccccac atgggaaagg agtgatgaaa accctcacta ccggttctct
2041 gattgcccgt gcgtcaggtt tactgcatga gaggatggat gaatttgaac tccagggccc
2101 cacaatcacc actttcaatt tcgaccggaa cagaatcacc gcctttagac aattggctgc
2161 agaaaacaaa tatgggttgg tggacaccat gagagttggc aatcaattga aaggggtgaa
2221 aaccatggaa gagcttaagc aagcaatcaa gaatgtgacc attaagaggt gccagattat
2281 ctacaatggt tccacgttcg accttgagtc tgacggtaag ggtaaagttt tggtggaaaa
2341 ggtcaaaaac acctctgtcc agaccaacaa tgagctggcc ggagccctac atcacctcag
2401 aagtgctcga attagatact atgtcaaatg tgtgcaagaa gcagtctact ccatcctaca
2461 aatcgccggc gctgcgttcg tcaccacacg tattgcacgc cgcatgaaca tacaagaact
2521 ttggtcaaag ccaacattag accaaagcga accagaggct agagaagagg cccccaagtt
2581 agaagatgat gagttcatca tatcctccaa agacatcaag gaggaaggaa agaagggcaa
2641 aaacaagact ggccgtggca ggaaacacac tgcattttct agcaagggct taagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttttgc gaggaggaag aaattaaaat ccgccagagg atctttcgcc ccaccagaaa
2881 acaaaggaag gaagaaaggg ccacgctagg gctagtgact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa attgtgggcc gacgacaaca gaagtgttga
3001 ctacaatgaa aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt
3061 tggttccggt tggggttttt gggtgtcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcgggc ataacagagg cgtttggagt ccccatcaaa caagtccaag tccacaaatc
3181 aggtgagttt tgccggttca ggttcccaaa accaattaga ccagatgtga caggaatgat
3241 cctggaagaa ggtgcgccag agggcaccgt ggcaaccgtg ctcatcaaac gccccaccgg
3301 agaactcatg cccctcgcag ccagaatggg aacacacgca accatgagaa ttcagggccg
3361 catggttggc gggcagatgg gtatgttgct cactggttca aatgctaagg gtatggattt
3421 ggggacaact cctggtgact gtggctgccc gtacatctac aaaaggggca atgactatgt
3481 agtcattgga gtgcacacag cggcagcccg tggtggaaac actgtcatct gtgccacaca
3541 gggaagcgaa ggtgaggcga ctctcgaggg tggagacaac aaaggaacat actgtggggc
3601 acccatcctg ggtcctggag gagcaccaaa attgagcacc aaaaccaaat tttggagatc
3661 atcaaacacg cccctcccac cagggacata tgagcccgcc taccttggcg gtcgtgaccc
3721 gcgtgtaaag ggcggaccct ctttgcagca agtcatgaga gatcagttga agcccttcac
3781 tgagcccagg ggtaaacctc caaaacctaa tgtgctggag gcagctaaac agaccatcat
3841 caacgtcctc gagcaaactt tggacccccc acaaaagtgg acatacgcac aagcgtgcgc
3901 ttcacttgat aagaccacct ctagtgggca cccccatcac gtccgaaaga atgaattctg
3961 gaacggtgag acctttgttg gtaagttggc agaccaagca tcaaaagcga acctgatgtt
4021 tgaggaaggg aaacacatga caccagtgta cacagcagcc ctcaaggatg agctggtcaa
4081 gactgacaaa atctatggaa agatcaagaa gagattgctt tggggctctg acttgtccac
4141 catgatccga tgtgccaggg cctttggtgg actcatggat gagatgaagg cacactgcat
4201 atcactccca gtccgagttg gtatgaacat gaatgaggat ggcccaataa tatttgagaa
4261 gcattccaga tacaagtacc attatgatgc agattactcc cgttgggact caacacaaca
4321 gagggctgtc ctagcagcgg ccttggaaat aatggtcaga ttctctgcag aaccacaact
4381 ggcgcaaaca gtcgctgaag atctgctggc ccccagtgtg gtagatgtag gagacttcaa
4441 aatttcaata aatgaggggc tcccttctgg tgtaccatgc acttcccagt ggaactccat
4501 cacacactgg ctgttgactc tctgtgcttt gtctgaagtc accaacctgt cccctgacat
4561 cgtgcaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattagac cctgaaaagt taaccaccaa attgagggag tatggtctga aaccaacccg
4681 cccagacaaa accgagggac ctctgattat cagtgaggat ttgaacggac tcaccttcct
4741 ccggaggaca gtttctcgtg acccagctgg ctggtttggg aagttagacc aaagctcgat
4801 actgaggcag atgtattgga ccagaggacc aaaccatgaa gaccccaatg aaacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct ctcttcacgg
4921 accctctttc tacagcaaga ttagtaaatt ggtcataacc gaactcaaag aaggtgggat
4981 ggatttttac gtgccaaggc aggaacctat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctaacgat ggtgctacgg gcctcgtccc agagatcaac aacgagaccc
5161 tccctttgga accagttgcg ggtgcagcaa tcgccgcgcc tgtcactggc caaaataata
5221 taattgatcc ctggattaga acaaattttg tacaagcacc caatggagag ttcactgtct
5281 cacctagaaa ctcccctgga gaaattcttt taaatttaga attgggtcct gatttaaatc
5341 catatttggc acatctatct agaatgtaca atgggtatgc cggtggcgtg gaagtccaag
5401 tcctcctagc agggaacgcg ttcactgcag ggaagatcct cttcgctgcc gtaccaccaa
5461 atttcccagt tgaattcttg agtcctgcac agattactat gttgccacac ctaatagttg
5521 atgttagaac ccttgaaccc atcatgatac cactccctga tgttaggaac accttctttc
5581 attacaacaa tcaacccgcc aaccgcatgc gattggtggc tatgttgtat acccctttga
5641 gatctaatgg ttctggtgat gatgtcttca ctgtttcatg tagagtgcta actaggccca
5701 ccccagattt tgagttcaca tatttggtcc ctccttcagt agagtctaag actaaaccct
5761 tttctctgcc tatattaaca atttctgaat taaccaattc aagatttcct gcacccatag
5821 attcattgtt tacagcccag aataacaatc tcaatgtcca atgtcagaat ggtcggtgca
5881 cactggatgg tgagttgcag ggaaccactc aattgctgcc ctcgggtata tgtgctttca
5941 ggggaagact aacagcagat gtagacggaa gtcacgatga cagatggcac atgcagttga
6001 ccaacctcaa tggaaccccc tttgatccaa cagaggacgt gccggctccg ttaggcaccc
6061 cagacttcac aggcctcctc ttcggagtgg caagtcagag gaatgttgga tccaacccaa
6121 acaccactag ggcgcacgag gctgtgatct ccacaaccag ttcacagttt gtgccaaaat
6181 taggatcagt caactttggt agtactagca ccgacttcca actacaacaa cccaccaaat
6241 tcacaccagt tggaatcaag attgaaagtg gacacgaatt tgatcagtgg gccctaccta
6301 gatactcagg tcatttgacc ctcaatatga accttgcccc acctattgcc ccaaatttcc
6361 ctggtgagca gttgttgttc tttagatcaa atgttccttg tgctggtggc gtcagtgatg
6421 gtgtcatcga ttgcttgttg cctcaggagt ggatacagca cttctatcag gagtctgctc
6481 catcccagtc tgatgtggct ctgatcaggt atgtcaaccc tgacactggc cgcacactct
6541 tcgaggcgaa actccacaga acaggctaca tcactgttgc ccactcaggt gattatcccc
6601 tcgttgtccc ctccaatgga tattttagat ttgattcctg ggtcaaccag ttttactcac
6661 tcgcccccat gggaacagga aatgggcgca gacgggtgca gtaatggcag gagctttcat
6721 agcaggtctt gcaggtgaca tgctcaccaa cacagttggc tccctagtga atgctggggc
6781 caatgctata acccaaaagg tggattttga gaacaacaaa cagctccaag cagcctcttt
6841 tcaacatgac aaagacatgc ttcaagcaca ggtggctgcc acaaaacaat tgcaggctga
6901 catgatcgcc atcaaacagg ggatattgac cgctggcggc ttttccccca ctgacgcggc
6961 gagaggaaca gtgggtgcac ccatgaccaa ggtcctcgat tggtctggta ctcgttactg
7021 ggcgccaaac tccacgagga caactggtta ctcagggcag ttcacatcaa cgcccttgca
7081 cacacccgtg aaaacaagtc agcctgctcc tgccaaaagg acccaacccc tctcttcatc
7141 ctcaggtagt atctacagcc tttcaacaca aagtactgtt ttgactaaac cttcttctgg
7201 ttcttccgtt tcttctgctt caacgcaatc tacaaaattg agttcagttt cttcaatgga
7261 taggacagca gattgggtta accaacaaag gagcctcagc ccttacatga gaggtgctct
7321 caatatatct catgtaacac ctccatcaag tagggcttcg agttcgggaa cagtctcgac
7381 tgtacccaag gaagttttgg actcctggac acctgcattc aatacacgca gacagccgct
7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaagaat caattaattt
7501 taattaattt tgattaggtt ttaattggat ctttt
//