Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196284 | GII.21 | |
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| GII.P21 |
ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7462
LOCUS KJ196284 7491 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284, complete
genome.
ACCESSION KJ196284
VERSION KJ196284.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284
ORGANISM Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus
GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284"
/mol_type="genomic RNA"
/isolate="Kawasaki/YO284"
/host="Homo sapiens"
/db_xref="taxon:1529919"
/country="Japan"
/collection_date="2007"
/note="genotype: GII.P21_GII.21"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AII73740.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSNMAVTFKRALGARP
KQPPPRDKPPRPPRPPTPELVNRIPPPPPNGEDEPTISYNVKEGVSGLPELSTVTQPE
ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVLLCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDETNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNISVKKCQLVYGGSTYTLESDGKGNVCVEKVKNTSVQTNNELSGVFHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQVEDLEETSNKEGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAMLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPHHMRKNECW
NGETFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6704
/gene="VP1"
CDS 5085..6704
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73741.1"
/translation="MKMASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRNNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADIVVQPQNGRCTLDGELQGTT
QLLTTAICSYRGMTSNPTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
MLTQNPRTSGDEAANSHGIYISSTSEKFTPKLGTIGLHQVQGDIASNQQSKFTPVGIA
VNGNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGGQPIEIDC
LIPQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVV
PPNGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
gene 6704..7462
/gene="VP2"
CDS 6704..7462
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73742.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVTAGANAINQKVEYDFTKQLQSA
SFQHDKDMLQAQINATKQLQSDMMAIKAGVLTAGGFSPADAARGAVNAPMTKVLDWSG
TRYWAPNSTKTTSQSGQFSSTTVHRPFVQSKTVQPSPSRALSSSGSVRSLSTQSTMLS
NSSSSSRGTPSTQSTDISSSRTADWVRSQRSLSPYMDGALQTAFVTPPSSRASSTGTV
STVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 caacgcaaaa tcatcaagtg acggagtatt atctaatatg gccgtcactt ttaaacgagc
121 cctcggggcg cggcccaaac aaccgccccc gagggacaaa ccaccaagac ccccgagacc
181 acccacacca gagttggtta atagaattcc ccctccccca cccaacgggg aggacgagcc
241 aaccatttct tacaacgtca aagagggtgt ttctggcttg cctgaactct caacggtcac
301 ccaaccggaa gagagctcta cggcattcag cgttccccct cttagtcaga gggagaacag
361 ggatgcaaag gaacccctaa ctggaaccat cctggagatg tgggacgggg agatctacca
421 ttatggctta tatgtggaac gaggattagt gctcggtgta cacaaaccac cggcagccat
481 cagccttgct aaggttgagc tgaccccctt gtccttgtac tggagacctg tgtacacccc
541 acagtatctc atttcccctg acactctcag aaagttgcat ggggagacgt tcccttacac
601 agcctttgac aacaactgtt atgccttctg ctgttgggtt cttgacttga acgattcatg
661 gctgagcaga aggatgatac agaggacaac gggcttcttt cggccttacc aggactggaa
721 caggaaaccc ctccccacga tggacgactc caaagtgaag aaggtggcca atgttctcct
781 ctgtgctctc tcatcattgt ttactagacc aattaaggac attattggaa agttgaaacc
841 cctaaatatc ctcaacattc tagccacatg tgattggact tttgcaggca tagtagaatc
901 cctgatcctc ttggctgaac tgtttggagt tttctggaca cccccagatg tgtctgcaat
961 gatcgctccc ttactgggtg attatgagct acaggggccc gaggacctcg ctgtggaact
1021 cgtgcccgta gtaatgggag ggataggttt ggtgctggga ttcaccaaag agaaaattgg
1081 caaaatgctt tcatctgctg cttcaaccct gagggcgtgt aaagatctcg gagcttatgg
1141 gctggagata ctcaagttgg tcatgaagtg gtttttccca aagaaagacg aaacaaatga
1201 gttggcaatg gtgagatcca tcgaggatgc agtgctagac ctcgaggcca ttgagaacaa
1261 ccatatgaca gccctactca aggataagga cagccttgca acctacatga ggactcttga
1321 cttggaggag gagaaggcga ggaagttgtc caccaagtct gcatcaccgg acatcgtggg
1381 cacgattaac gccctactgt caaggattgc agctgcccgg tctctagtac acagggctaa
1441 ggaggaattg tcaagtaggc ctcgaccggt cgttgtgatg atttcaggga gaccaggtat
1501 agggaagacc catctagcta gagagttggc aaagaagatt gcctcctcac tcacaggtga
1561 ccagagggtg ggcctcatcc cacgcaacgg ggtcgaccac tgggatgcat acaaaggtga
1621 aagagtcgtc ctctgggacg actacgggat gagcaaccct atccacgacg ccctcagact
1681 ccaggagctc gctgacacct gccccctcac acttaactgt gacaggattg agaacaaagg
1741 caaagtcttt gacagtgacg ccataataat aaccaccaat ttagccaacc cagcgccact
1801 ggattatgtc aactttgaag cttgctcaag acgtatagac ttcctcgtct atgctgatgc
1861 ccctgaagtt gagaaggcta aacgggactt cccaggccag ccagatatgt ggaaggacac
1921 cttcaaacct gacttctcac acataaaact gacattagcc ccacaaggag gttttgacaa
1981 gaacggcaac accccccatg ggaagggtgt tatgaagacc ctcactgcta gctccctcgt
2041 tgcccgagca tcagggctcc tccacgagag actagacgag tatgagctgc aaggcccaac
2101 tcccacaaca ttcaacttcg accgcaacaa ggtgcttgct tttaggcagc tcgctgctga
2161 gaacaagtac ggtctcgttg acacaatgag ggtcggatca cagctcaaga atgtcaaaac
2221 catgacagaa ctcaaacagg ctctcaagaa catctcagtc aagaaatgcc agcttgtgta
2281 tggcgggagc acgtacacac tcgaatctga tggtaaaggc aatgtgtgtg ttgagaaggt
2341 gaagaacaca agtgtgcaga ctaacaacga actctccggc gtttttcacc acctcaggtg
2401 tgccaggatc aggtactatg tcaagtgtgt ccaggaagct ctctactcca tcttgcaaat
2461 tgccggggct gcattcatca ccacgcgcat tgcaaagcgc atgaacatac aaaacctctg
2521 gtccaaacca caagtggaag atttggagga gactagcaac aaagagggct gtccaaaacc
2581 taaagatgat gaggaatttg tcatctcctc tgatgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag actggccgtg gcaagaagca cacagccttt tccagcaaag gcctcagtga
2701 tgaggagtac gatgagtata agaggatcag agaagagaga aatggcaagt actccataga
2761 ggaataccta caggacagag acaagtacta tgaggaggtg gccatagcca gggcaactga
2821 ggaagatttc tgtgaagaag aggaggccaa aatccggcaa aggatattca gaccaacaag
2881 aaaacaacgc aaagaggaaa gggtctctct tggtttggtc acaggttctg agattaggaa
2941 gagaaatcca gatgacttta aacctaaagg gaaactatgg gctgatgatg acaggagtgt
3001 tgactacaat gagaaactta atttcgaggc tccaccaagc atttggtcac gaatagtcaa
3061 ctttggctca gggtggggct tttgggtctc gcctagcctc ttcataacat caacccatgt
3121 cattccccaa ggcgcacagg agttctttgg agtgcccatc aaacagatac aaattcacaa
3181 atcaggagag ttctgccggc ttagattccc aaaaccaatc aggacagatg tcacgggcat
3241 gatcttagag gaaggtgctc cagaaggtac tgttgccaca ctcctcatca agagaccaac
3301 tggagaactc atgcccttgg cagccagaat gggtacccac gcgaccatga aaatccaggg
3361 tcgcactgtt ggtgggcaga tgggcatgct acttacaggg tctaacgcca agagcatgga
3421 tttgggcaca acccctggcg attgtggctg tccctacatc tacaagaggg ggaacgacta
3481 cgtggtcatt ggagttcaca ccgccgctgc tcgtggagga aacactgtca tctgtgcaac
3541 ccaaggaagc gagggtgaag ccatgctaga gggtggcgat aataagggaa cctactgtgg
3601 agcaccaata ttaggccctg gaaatgcccc caaactcagc accaaaacca aattctggag
3661 gtcttccacc acccccctgc cacccggaac ctatgaacca gcttatctgg gcggcaagga
3721 ccccagagtg aaaggtggtc cctcactgca acaggttatg agggatcagc taaaaccatt
3781 cactgagccc agaggcaaac cacccaaacc tagtgtgcta gaagctgcca agaagactat
3841 aatcaatgtg cttgaacaga caatagaccc acctcaaaaa tggacatacg cacaggcgtg
3901 tgcatcacta gataagacca cttccagcgg ccaccctcac cacatgcgga agaacgagtg
3961 ctggaacgga gagactttca caggaaaact ggcagaccaa gcatcaaagg ctaacctaat
4021 gtatgaggaa ggaaagaaca tgaccccagt atacacagga gctttgaagg acgagctagt
4081 caagactgat aagatctatg ggaagatcaa aaagagactc ctatggggtt cagacctatc
4141 aaccatgata cggtgtgcac gagccttcgg tgggctgatg gacgagctca aggcccattg
4201 cgtcacacta ccagtcaggg ttggcatgaa tatgaatgag gatggaccca taatatttga
4261 gaaacattcc agatacagat atcattatga tgcagattac tcccgctggg actcgacaca
4321 gcaaagagca gtgctggctg cagccctgga aataatggtc aaattttcat cagaacctca
4381 tctggcccaa gtggttgcag aagacctctt gtcccccagt gtgatggatg tgggtgattt
4441 caagatatca atcaatgagg ggttaccctc tggtgtgcct tgcacctcac agtggaactc
4501 cattgcccac tggcttctca cactatgtgc actgtctgaa gtcacagatc tgtcccctga
4561 catcatccag gcaaactccc tattctcctt ttatggtgat gatgaaatag tgagcacaga
4621 tatcaaattg gacccagaga aactgacagc aaagttgaag gaatacgggc taaaaccaac
4681 ccgtcctgat aaaacagaag gacccctaat tatctctgaa gacttggacg gcctgacctt
4741 cttacggaga acggtgaccc gcgatccggc tgggtggttt ggcaaactgg accaaagttc
4801 aatactcaga caaatgtact ggaccagggg accaaaccat gaggacccct ctgaaacaat
4861 gataccacac tcccaaagac ccatacaact gatgtcacta ctaggtgaag ctgcactaca
4921 tggcccatca ttctatagta aaattagcaa gttggtcatc tcagaattga aagagggtgg
4981 gatggacttt tacgtgccca gacaagaacc aatgtttagg tggatgaggt tctcagattt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaac gatggtgcta caggtctcgt accagagatc aacactgaga
5161 ccttgcctct cgagcccgtg gccggagcgg caattgctgc ccctgttacg ggccaaaata
5221 atataattga tccctggatt agaaataatt ttgtgcaggc gcctaatggt gagtttacag
5281 tctcccctag aaattcccct ggtgaaattt taatgaactt ggagttaggg ccagatctta
5341 atccatattt ggctcacctt tcaagaatgt acaatggtta tgctggaggt gtagaagtgc
5401 aagtgctcct agctgggaat gcgttcacgg caggaaagat cctttttgca gcagtccccc
5461 caaatttccc cgttgatatg ctcagtcctg ctcaaatcac aatgcttccc catttaattg
5521 tagatgtcag aactttggag cccattatga tccctctgcc cgatgttagg aatgttttct
5581 atcactttaa taaccagcct gccccaagaa tgagattggt tgccatgctc tacacccctt
5641 taagatccaa tgggtccggt gatgacgtat tcaccgtctc ctgcagggtg ttaaccagac
5701 ctactccgga ctttgagttt acatacttag tccccccctc ggtagagtcc aaaaccaaac
5761 ctttcaccct acccatccta acaattggag agttgacaaa ctctagattt ccagccccga
5821 tcgatcagtt gtacacttca cccaacgctg atatagttgt ccaaccccaa aatggccggt
5881 gcacactgga tggtgagcta caaggtacaa cacaactctt gacaacagca atatgctcat
5941 acaggggcat gacatcaaac cccactagtg actactggga tgatcacctc ctgcacctgg
6001 ttcaccccaa tggggcaaca tatgacccga ccgaggacgt gccagctcct tttggcacgc
6061 aggactttcg gggcattttg tatgggatgt tgactcaaaa cccccgaacc tccggggacg
6121 aagccgccaa ctcccatggg atctacatct catccaccag tgaaaagttc actccaaaat
6181 tgggtacaat tggcttacac caagtgcaag gcgacatagc cagcaaccaa cagtcaaaat
6241 tcacaccagt agggatagca gtgaatggca acactccttt cagacagtgg gaactcccaa
6301 actactctgg tgccctcacc ctcaacacaa accttgcacc agcggttggg cccaacttcc
6361 ctggggagca aatccttttc ttcaggtcaa atgttccaag tgttcaaggt ggccaaccta
6421 tagagattga ttgcctgatc ccacaagaat gggtctccca tttttatcaa gaatcagccc
6481 cttctcagag tgatgtggcc ttggtcaggt atgtcaaccc tgacacaggg cgcacaatct
6541 ttgaggccaa attgcatagg cagggattta tcaccatagc ggccactgga agcaaccccg
6601 tggtcgtgcc tcccaatggg tatttcagat ttgattcctg ggtcaaccag ttttatgcac
6661 tcgcccccat gggaactggg aatgggcgca gaagagttca gtaatggctg gagctttcat
6721 agcaggattg gcaggtgaca tgctcaccaa cactgttggt tccctggtca cagcgggggc
6781 taacgctata aaccaaaaag ttgaatatga cttcaccaaa caactgcaaa gtgcctcctt
6841 ccaacatgac aaggacatgc ttcaagccca gatcaacgca acaaaacaat tgcagagtga
6901 catgatggcc atcaaagcag gggttttgac cgctggcggc ttttcccctg ctgatgcagc
6961 cagaggggca gtcaatgctc caatgacaaa agtcttagat tggtcaggga cgcgttactg
7021 ggcacccaac tcaaccaaaa caacaagcca atctggccag ttctcctcta caactgtaca
7081 tagacccttt gttcaatcaa aaactgtcca accatctcct tcgcgggcgc tctcatcttc
7141 gggtagcgtt cgcagccttt ctactcaatc aacaatgctt tcaaattcta gctcctcttc
7201 tcgtgggact ccttcaactc aatcaacaga tatttcttcc tcgcgaacgg cagactgggt
7261 tcgaagtcag aggagcctga gcccctatat ggatggggct ctgcagacag cctttgtcac
7321 cccaccatca agcagagctt cttctacagg caccgtctca acagtgccta aaggggtttt
7381 ggactcctgg acacctgcgt tcaacacccg caggcagccg cttttcgcac acctcaggaa
7441 gaggggggag tcacaagcct agtgaaaaga attattttga taaattcttt t
//