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Typing tool
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Complete norovirus genomes
KJ196282 | GII.12 | ![]() |
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GII.P12 |
ORF1: 5..5104 ORF2: 5085..6692 ORF3: 6692..7471LOCUS KJ196282 7517 bp RNA linear VRL 10-AUG-2014 DEFINITION Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15, complete genome. ACCESSION KJ196282 VERSION KJ196282.1 KEYWORDS . SOURCE Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15 ORGANISM Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7517) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7517 /organism="Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15" /mol_type="genomic RNA" /isolate="Saitama/T15" /host="Homo sapiens" /db_xref="taxon:1529912" /geo_loc_name="Japan" /collection_date="2001" /note="genotype: GII.P12_GII.12" CDS 5..5104 /codon_start=1 /product="polyprotein" /protein_id="AII73734.1" /translation="MKMASNDASAAAAANSNNDTAKSSSDGMLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLTNPAPLDYVNFEACSRRIDFLVYADAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKQALKNISIKSCQIVYGGCTYMLESDGKGDVKVDRVQNATVQTNNELAGALHHLR CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVNRMNIQDLWSKPQVEDTEETASKDGC PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPNLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5085..6692 /gene="VP1" CDS 5085..6692 /gene="VP1" /codon_start=1 /product="VP1" /protein_id="AII73735.1" /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSPRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEENDVHINQPTKFTPVGLFED EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6692..7471 /gene="VP2" CDS 6692..7471 /gene="VP2" /codon_start=1 /product="VP2" /protein_id="AII73736.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRYWAPGATKTTTFSGGFTNVSHARTVDLTKKTSATPAPTPVSRPSSVASTVSTRSTL VSGSSNPSFSARSSSSVSTQPTSSSSRTSEWVRSQNRALEPYMRGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggaatgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acccacccca gaactggtca aaaagatccc ccctcctcca cccaacgggg aggatgaacc 241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ccactgtcag 301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag 361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca 421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat 481 cagcctcgcc aaggttgaat taacaccact ctctctgttt tggagaccag tgtatacacc 541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt ttccctacac 601 agcctttgat aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg 661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagactggaa 721 taggaaaccc ctccccacca tggatgactc caagttgaag aaggtagcta acatattttt 781 gtgcgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc 841 tctcaacatc cttaacatct tggcttcatg tgattggact tttgcaggca tagtggaatc 901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact 1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg 1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg 1141 actggaaatt ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga 1201 gctggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaataa 1261 ccacatgact gctctcctca aagacaaaga cagcctggca acctatatga gaactcttga 1321 cctcgaggag gagaaagcca gaaagctttc aaccaagtct gcttcacctg atatcgtggg 1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa 1441 agaggagctc tccagcagac caagacctgt tgttgtgatg atatcaggta ggccagggat 1501 agggaaaacc caccttgcca gggaattggc caagaaaatc gcagcttctc tcacagggga 1561 ccagcgtgtg ggtctcatcc cgcgcaatgg tgttgatcac tgggacgcat ataagggaga 1621 aagagtcgtt ctatgggacg actatggaat gagtaacccc atccacgacg ccctcaggtt 1681 acaagaactt gctgacacct gccccctcac gctaaattgt gataggattg agaacaaagg 1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctgaccaacc cagcaccact 1801 ggactatgtc aattttgaag catgctcgag gcgtatcgac ttcctcgtgt atgcagatgc 1861 ccctgaagtc gagaaggcaa aacgtgattt cccaggtcaa cctgacatgt ggaagaacgc 1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa 1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat 2041 cgcacgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac 2101 ccccactacc ttcaactttg accgcaataa ggtgcttgcg ttcagacagc ttgctgctga 2161 aaacaagtac gggttgatgg acacaatgag agtcggaaga cagctcaagg atgtcaggac 2221 catgccagag ctcaaacaag cactcaagaa tatctcaatc aagagttgcc agatagtgta 2281 tggtggctgc acctatatgc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt 2341 tcagaatgct actgtgcaga ccaacaatga actggccggt gccctacacc atcttaggtg 2401 tgccaggatt agatactatg tcaagtgcat tcaggaggcc ctgtattcca tcatccaaat 2461 tgctggagct gcatttgtca ccacgcgcat tgtcaaccgc atgaacatac aagacctttg 2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc 2581 caaggatgat gacgagttcg ttgtttcatc cgacgacatc aaaaccgagg gcaagaaagg 2641 aaagaacaag tctggccgtg gtaagaagca cacggcattc tcaagcaaag gtctcagtga 2701 tgaggagtac gatgagtaca aaagaatcag agaagaaaga aacggcaagt actctataga 2761 ggaatacctt caggacagag ataagtatta tgaggaggtg gccatcgcca gggcgaccga 2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttta ggccaacaag 2881 gaaacaacgc aaagaggaga gggcctctct cggcttggtc acaggttctg aaatcaggaa 2941 gaggaaccca gacgacttca aacctaaagg aaagctgtgg gctgatgacg acaggagtgt 3001 tgactacaat gagagactca attttgaagc cccaccaagc atttggtcga ggatagtcaa 3061 ctttggttca ggttggggtt tttgggtttc ccccagcctg ttcataacat caactcatgt 3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aagcaaattc agatacacaa 3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgatg tgacaggcat 3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ttactcatca agagaccaac 3301 tggggaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agatacaagg 3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tctaacgcca agagtatgga 3421 cttgggcacc acaccaggtg actgtggctg tccctacatt tacaagagag ggaatgacta 3481 catagtcatt ggagtccaca cggctgctgc ccgtggagga aacaccgtca tatgtgccac 3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgcgg 3601 cgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttttggag 3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaagga 3721 ccccagagtc aaaggtggcc cctcattgca acaagttatg agagaccagc tgaaaccatt 3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat 3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg 3901 cgcatccctg gacaagacca cttccagtgg ccacccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat 4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt 4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc 4141 gaccatgatc cggtgtgctc gagcgtttgg aggcctgatg gaggaactca aagcacattg 4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggcccta tcatctttga 4261 gagacactcc agatataagt atcattatga tgctgattac tcccggtggg actcaacaca 4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgaa 4381 tctggcccaa aaggttgcag aagaccttct ctcccccagc gtgatggacg taggtgactt 4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc 4501 catcgcccac tggctcctca ccctctgtgc gctttctgag gttacaaacc tgtcccctga 4561 cattatccag gctaattccc tcttttcctt ctacggtgat gatgaaattg tgagcacaga 4621 cataaaattg gacccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac 4681 ccgccctgac aagactgagg gaccccttgt tatctctgag gacctggatg gcctaacctt 4741 cctgcggagg actgtaaccc gcgacccagc tggctggttt ggaaagctgg aacagagctc 4801 aatacttagg caaatgtatt ggactagggg ccctaaccat gaagacccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tttcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga 5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca 5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg 5281 tttcaccccg caactcgccc ggggaagtcc tattaaattt ggaattaggc cccgaactaa 5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcgggtggg gttgaggtgc 5401 aagtactact ggctgggaat gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc 5461 ctcattttcc attagaaaat ataagccctg gccagataac tatgttccct catgtaatta 5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc tgatgttagg aataacttct 5581 ttcattataa tcagcagaat gaaccgagga tgagacttgt agcaatgctt tatactcctc 5641 ttagatctaa tggttctggt gatgatgtat tcactgtctc ctgcagggtg ctcacccgac 5701 cttcccctga ttttgatttt aattatttgg tcccccctac tgttgaatct aaaaccaaac 5761 ccttcacact ccctatcttg actatagggg agttaaccaa ctccaggttc cctgtgccta 5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aacgggagat 5881 gcgcactaga tggggagctg cagggcacga ctcagctcct ccccacggcg atctgctcgt 5941 tcaggggccg gatcaatcag aaggtgagtg gggaaaacca cgtttggaat atgcaggtca 6001 ccaacattaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc 6061 cagatttctc tggcaagctc tttggtgtac taagcccgag agaccatgat aatgcctgca 6121 ggagtcatga tgcagtaatt gcaaccaact ctgccaaatt caccccaaaa ttgggcgcta 6181 tacaaattgg cacatgggaa gaaaacgatg tgcacatcaa ccaacctact aagtttactc 6241 cagttggctt gtttgaagat gaaggtttca accagtggac actccccaat tattctggag 6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa 6361 ttcttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt 6421 gtctcttgcc tcaagaatgg atccaacatc tttaccaaga gtcggccccc tcacaatcag 6481 atgtagcact gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat 6541 tacacaggag tggttacatc acagtggcca atactggtag cagaccgatt gtcgtaccag 6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg 6661 gaactggaaa tgggcgcaga agggtgcaat aatggctgga gcttttatag cagggcttgc 6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcca atgcaataaa 6781 tcaaaaagta gactttgaaa acaacaagca actacagcag gcttctttca accatgataa 6841 agagatgctg caagctcaag tccaggccac caaacagctg caggctgata tgattgcaat 6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt 6961 taatgcacct atgactcagg ttttagactg gaatgggacc agatattggg cccccggagc 7021 cacgaaaact actactttct ccggtggatt caccaatgtt tctcatgcca gaactgtcga 7081 cctgaccaag aagacatcag ccacaccagc ccctacgcct gtttccagac ctagctctgt 7141 cgcctctaca gtctccaccc gctcaacctt ggttagcggg tcttccaatc cttctttttc 7201 agctaggagt tcttctagtg tttctactca acccacctcc tcctcttctc ggaccagtga 7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacgcacagc 7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa 7381 agaggttttg gactcctgga catctgcatt caacacccgc agacaaccgc tattcgctca 7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat aatctttatt ttctttcctt 7501 tgaagatttt gtctttt //