Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196282 | GII.12 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS KJ196282 7517 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15, complete
genome.
ACCESSION KJ196282
VERSION KJ196282.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15
ORGANISM Norovirus GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7517)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus
GII/Hu/JP/2001/GII.P12_GII.12/Saitama/T15"
/mol_type="genomic RNA"
/isolate="Saitama/T15"
/host="Homo sapiens"
/db_xref="taxon:1529912"
/country="Japan"
/collection_date="2001"
/note="genotype: GII.P12_GII.12"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AII73734.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGMLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLTNPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKSCQIVYGGCTYMLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVNRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPNLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6692
/gene="VP1"
CDS 5085..6692
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73735.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSPRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEENDVHINQPTKFTPVGLFED
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6692..7471
/gene="VP2"
CDS 6692..7471
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73736.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTTFSGGFTNVSHARTVDLTKKTSATPAPTPVSRPSSVASTVSTRSTL
VSGSSNPSFSARSSSSVSTQPTSSSSRTSEWVRSQNRALEPYMRGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggaatgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acccacccca gaactggtca aaaagatccc ccctcctcca cccaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ccactgtcag
301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaat taacaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt ttccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagactggaa
721 taggaaaccc ctccccacca tggatgactc caagttgaag aaggtagcta acatattttt
781 gtgcgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
841 tctcaacatc cttaacatct tggcttcatg tgattggact tttgcaggca tagtggaatc
901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatt ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaataa
1261 ccacatgact gctctcctca aagacaaaga cagcctggca acctatatga gaactcttga
1321 cctcgaggag gagaaagcca gaaagctttc aaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttgtgatg atatcaggta ggccagggat
1501 agggaaaacc caccttgcca gggaattggc caagaaaatc gcagcttctc tcacagggga
1561 ccagcgtgtg ggtctcatcc cgcgcaatgg tgttgatcac tgggacgcat ataagggaga
1621 aagagtcgtt ctatgggacg actatggaat gagtaacccc atccacgacg ccctcaggtt
1681 acaagaactt gctgacacct gccccctcac gctaaattgt gataggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctgaccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgtatcgac ttcctcgtgt atgcagatgc
1861 ccctgaagtc gagaaggcaa aacgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcacgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 ccccactacc ttcaactttg accgcaataa ggtgcttgcg ttcagacagc ttgctgctga
2161 aaacaagtac gggttgatgg acacaatgag agtcggaaga cagctcaagg atgtcaggac
2221 catgccagag ctcaaacaag cactcaagaa tatctcaatc aagagttgcc agatagtgta
2281 tggtggctgc acctatatgc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaatgct actgtgcaga ccaacaatga actggccggt gccctacacc atcttaggtg
2401 tgccaggatt agatactatg tcaagtgcat tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat tgtcaaccgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtttcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag tctggccgtg gtaagaagca cacggcattc tcaagcaaag gtctcagtga
2701 tgaggagtac gatgagtaca aaagaatcag agaagaaaga aacggcaagt actctataga
2761 ggaatacctt caggacagag ataagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttta ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggcttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca aacctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atttggtcga ggatagtcaa
3061 ctttggttca ggttggggtt tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aagcaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgatg tgacaggcat
3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ttactcatca agagaccaac
3301 tggggaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agatacaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tctaacgcca agagtatgga
3421 cttgggcacc acaccaggtg actgtggctg tccctacatt tacaagagag ggaatgacta
3481 catagtcatt ggagtccaca cggctgctgc ccgtggagga aacaccgtca tatgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgcgg
3601 cgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaagga
3721 ccccagagtc aaaggtggcc cctcattgca acaagttatg agagaccagc tgaaaccatt
3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctg gacaagacca cttccagtgg ccacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
4141 gaccatgatc cggtgtgctc gagcgtttgg aggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataagt atcattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgaa
4381 tctggcccaa aaggttgcag aagaccttct ctcccccagc gtgatggacg taggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ccctctgtgc gctttctgag gttacaaacc tgtcccctga
4561 cattatccag gctaattccc tcttttcctt ctacggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgagg gaccccttgt tatctctgag gacctggatg gcctaacctt
4741 cctgcggagg actgtaaccc gcgacccagc tggctggttt ggaaagctgg aacagagctc
4801 aatacttagg caaatgtatt ggactagggg ccctaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tttcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca
5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg
5281 tttcaccccg caactcgccc ggggaagtcc tattaaattt ggaattaggc cccgaactaa
5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcgggtggg gttgaggtgc
5401 aagtactact ggctgggaat gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc
5461 ctcattttcc attagaaaat ataagccctg gccagataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc tgatgttagg aataacttct
5581 ttcattataa tcagcagaat gaaccgagga tgagacttgt agcaatgctt tatactcctc
5641 ttagatctaa tggttctggt gatgatgtat tcactgtctc ctgcagggtg ctcacccgac
5701 cttcccctga ttttgatttt aattatttgg tcccccctac tgttgaatct aaaaccaaac
5761 ccttcacact ccctatcttg actatagggg agttaaccaa ctccaggttc cctgtgccta
5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aacgggagat
5881 gcgcactaga tggggagctg cagggcacga ctcagctcct ccccacggcg atctgctcgt
5941 tcaggggccg gatcaatcag aaggtgagtg gggaaaacca cgtttggaat atgcaggtca
6001 ccaacattaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc
6061 cagatttctc tggcaagctc tttggtgtac taagcccgag agaccatgat aatgcctgca
6121 ggagtcatga tgcagtaatt gcaaccaact ctgccaaatt caccccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa gaaaacgatg tgcacatcaa ccaacctact aagtttactc
6241 cagttggctt gtttgaagat gaaggtttca accagtggac actccccaat tattctggag
6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa
6361 ttcttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
6421 gtctcttgcc tcaagaatgg atccaacatc tttaccaaga gtcggccccc tcacaatcag
6481 atgtagcact gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
6541 tacacaggag tggttacatc acagtggcca atactggtag cagaccgatt gtcgtaccag
6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg
6661 gaactggaaa tgggcgcaga agggtgcaat aatggctgga gcttttatag cagggcttgc
6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcca atgcaataaa
6781 tcaaaaagta gactttgaaa acaacaagca actacagcag gcttctttca accatgataa
6841 agagatgctg caagctcaag tccaggccac caaacagctg caggctgata tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
6961 taatgcacct atgactcagg ttttagactg gaatgggacc agatattggg cccccggagc
7021 cacgaaaact actactttct ccggtggatt caccaatgtt tctcatgcca gaactgtcga
7081 cctgaccaag aagacatcag ccacaccagc ccctacgcct gtttccagac ctagctctgt
7141 cgcctctaca gtctccaccc gctcaacctt ggttagcggg tcttccaatc cttctttttc
7201 agctaggagt tcttctagtg tttctactca acccacctcc tcctcttctc ggaccagtga
7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacgcacagc
7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcatt caacacccgc agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat aatctttatt ttctttcctt
7501 tgaagatttt gtctttt
//