Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196278 | GII.14 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6689
ORF3: 6689..7483
LOCUS KJ196278 7529 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99, complete
genome.
ACCESSION KJ196278
VERSION KJ196278.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99
ORGANISM Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7529)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7529
/organism="Norovirus
GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99"
/mol_type="genomic RNA"
/isolate="Sendai/YG99"
/host="Homo sapiens"
/db_xref="taxon:1529921"
/country="Japan"
/collection_date="2007"
/note="genotype: GII.P7_GII.14"
CDS 5..5098
/codon_start=1
/product="polyprotein"
/protein_id="AII73722.1"
/translation="MKMASNDATAAFGSQNSVNDSINATPSNKEEVGAFSNIKVGFKK
MLGAVPKGTRAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRSATEPLPGTILEMWDGEFFHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKFALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIENNASQTANEVQSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTEAQEVNESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTDPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6689
/gene="VP1"
CDS 5079..6689
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73723.1"
/translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAVLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 6689..7483
/gene="VP2"
CDS 6689..7483
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73724.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG
SRYWAPNSMKTTGYSGTFASQGIKSSPHLSNQIPSAVKSTKPLPSISSSSSVYSSPST
APSQSTQSTTLSAGTGSSRSNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtatc aacgccaccc cttccaataa ggaagaggtt ggtgcattct ccaacatcaa
121 agttggattt aagaaaatgc tgggtgctgt acccaagggc accagagcac ccagcagtgg
181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaattcccc ctgagccccc
241 aaatggtgaa gacactgtgc agtttgatgc aaagtcggaa actataatcg ggctgccgga
301 cttgacaacg gtgcaaaacg agcatgaaaa caccccatac accgtccccc cattaagtga
361 gagggagcac agatcggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
421 tgaatttttc cactactccg tgtatgtcag cgatggcaaa gctctggggg tccacaaacc
481 accggctgct ataagcctcg cgacgataga gctcaccccc atatctctct actggagacc
541 cgtttacacc cccaactatt tggtctcccc agacacattg aaaggcctcg ctggtgagaa
601 gttcccctac acggccttca gtaacaattg ttataacttt tgttgttggg tgcttgagct
661 caacgacacg tggctcaaca gaagatgcat ttccagaacc accggcttct tcaaacctta
721 tcaagcttgg aacaggaagc ccctcccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcgatc ctctgcgcac ttggctcact gttctcaaaa ccaatcaaag atttgttagg
841 caaacttaag ccattgaacc tgctacactt gcttgcgtca tgcgattgga cgtttgcagg
901 tatagtggag acagtcatct taatggcaga acttttcaat atcttctgga ccccgccaga
961 tgtctctaat tttatagcct ccctgatagg tgattttgaa ttacaagggc ctgaggacct
1021 ggctgtggaa ctcgttcctg tggttatggg tggcatagga atggttctcg gcttcaccgc
1081 tgagaagata ggccgtatgc tgtcatccgc cgcatcaaca ctgcgggcat gcaaagacct
1141 agggaactat gcccttgaca ttctcaaatt ggtcatgaag tggttcttcc caaagaagga
1201 agagaaagct gagatggaaa ctttgagggc gatcgaggat gccgtcctag atatggaagc
1261 tatagggaat aaccatctca cgaccctcct caaggacaaa gacagcctca cggcttttat
1321 gaagaccctg gacctagaag aggaaaaagc aagaaaactg tccactaagt catcttcacc
1381 ggacatcgtc ggcaccatta atgccatact agctaggatt gctgctgcca gatcccttct
1441 acataaggcc aaagaagaga tgtttagtag gatcagacca gtggtcgtta tgatatcagg
1501 cagacctggc attggcaaaa cccacatggc aagacatttg gctaagagca tcgccaacac
1561 catgagtggc gaccagagag tcgggctcgt cccacgcaac ggtgtcgacc actgggatgc
1621 ctacagagga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
1681 tgccttaaca ctacaggagc tggccgacac ctgtccagtc actttaaatt gtgataggat
1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacaacca acctggtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttcc aggagagttg acttcttggt
1861 ctatgcagag tcaccagaga ttgaaaaggt caagagggac ttccctggcc aacctgacat
1921 gtggaaagac cattttaagc cagacttttc tcacatcaag ctaactttag ccccccaggg
1981 cgggtttgac aagaatggta acactccaca cggtaagggt accatgcggt ccctgaccca
2041 ggggtccctg actgcaagag ttgcgggcct tgtccatgag aggagagatg agttccaact
2101 ccaaggaaac gacctccaaa catacaattt tgacaccaac agagtctccg cattcagaaa
2161 actggctgca gataacaagt atggtatcat ggaaacgatg agagtaggtg cggcactcaa
2221 aaatgtgaag accttggaag atctaaaatt tgcactaagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaagaact ctaagtatcg agtctcttcc aacggtaaag gctcagtttc
2341 tgttgacaaa attgagaaca atgcatccca gaccgcaaac gaggtacaat cagcacttct
2401 caggctcaga caagcgaggg ccagatatta catcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccggag catcattcgt tgtcaacaga atttccaaaa ggttctgctg
2521 ggaaaggtgg gtcaaaccaa ccgaggccca agaagtgaat gagtccgaaa aggaagtggc
2581 tcaaggtaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaaaaa
2641 caagaaagga aggggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaatgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcaa cagaggagga
2821 cttctgtgaa gaggaagagg ccaaaataag acaaagaatt ttccgcccga caaagaaaca
2881 aaggaaggag gaaaggggtg tacttggctt agtcaccggc acagacatca gaaagaggag
2941 accagacgat tttcaaccaa aaggcaatct atgggcagat gacaccagga gtgtggacta
3001 caatgagaga cttgattttg aagcgccccc aagtgtctgg tcaagaatag tcccattagg
3061 cactggttgg ggtttctggg tttcatccaa ccttctaatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggaactct ttggagttga aatcaaacag atccaagttc acaagtctgg
3181 agagttttgc aggtttagat tcccaagacc aatcaggcca gatgtcacag ggctcgtgtt
3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ctacaggtga
3301 gatgatcccc ttggcagtga ggatgggcac acacgcatcc atgaaaatac aaggcaggac
3361 cgttggtggc cagatgggaa tgcttctaac aggagcaaat gcgaagaaca tggatcttgg
3421 caccggccct ggtgactgcg gttgtcccta catctacaaa cgcggcaacg atatagttgt
3481 cgcgggcgtc cacaccgcag cagcccgggg aggtaacact gtcatatgcg ccacccaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctc ggtacctact gtggcgcccc
3601 aattctgggc cctggtaagg cacctaaact cagcacgaag accaagtttt ggcgctcatc
3661 accagatgcc ttgccacctg gcacatatga acctgcttac ctgggaggca aagaccccag
3721 agtggaaaga ggaccttccc tgcagcaagt catgagagac cagttgagac ccttcacaga
3781 ccccagggga aaaccgccta gacctgcagt cttagaagaa gccaagaaga cagtgatgaa
3841 tgttttagaa caaaccattg accctgcaaa accgtggtcc tactcgcaag catgtgcctc
3901 actggacaaa accacttcta gtggtagccc ccatcatgta aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc ccctagcaga tcaggcatcc aaagccaacc tcatgtatga
4021 acaggctaaa catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc ttgttaagac
4081 tgacaagatc tacaaaaaga taaagaagag gctcctatgg ggatcggacc ttggaacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gctgtatagc
4201 tcttccatgc agggtaggaa tgaacatgaa tgaagatggc cctatcatat ttgacaaaca
4261 ttctaagtat aggtaccact atgatgctga ctattccagg tgggactcaa cccagcaaag
4321 gagcattctt tctgccgcta tggaagtgat ggtgcgattt tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcgcc tagtcagctt gatgttggtg attttatcat
4441 ctcagttcag gagggtctgc catcaggagt cccatgtaca tcacaatgga actcaatagc
4501 acactggatc ctaactttga gtgcgatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcttgctttt cattttatgg ggacgatgag atcgtcagca ccgacatcaa
4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggcctggtcc ccacccgacc
4681 tgataaaact gaaggtcccc tcgtcataac tgaagatctc accggcctga cgttccttcg
4741 taggtcgatt gcacgggacc cagctggatg gtttggaaaa ttggaccaag attcaatcct
4801 caggcaacta tactggacaa ggggacctaa ccacgagaac ccgtacgaga gcatggtccc
4861 tcattcccag cgagccacac agcttatggc tctccttggt gaggcttcac tgcatggtcc
4921 ccaattttac aagaaagtca gcaagatggt tattaatgag attaagagtg gtggtctgga
4981 attttatgtg cccagacagg aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacagt gaggttatgg
5161 ctcttgaacc cgtcgctggg gcctccattg cagcccccgt agtcggccaa cagaatataa
5221 ttgatccctg gattagaaat aattttgtac aagcccctgc tggtgaattc acagtttccc
5281 ctagaaactc tcctggagaa cttctacttg atttggaatt gggtcctgaa cttaatccct
5341 atcttgcaca tttggccagg atgtacaatg ggcacgcagg aggaatggaa gtgcagatag
5401 tactggctgg gaatgcgttc acagctggta aaatcctatt tgctgccatc ccgcctagct
5461 tcccctatga aaatttgtca cccgctcaat tgactatgtg tccccatgtg atagtggatg
5521 tgagacaatt agaaccagtg cttctgccaa tgccagatat aagaaatgtt ttctatcact
5581 ataaccagaa caatagtccc aaacttaggc ttgtagctat gctttatact cctctgaggg
5641 ctaacaactc aggtgatgac gtgttcacgg tgtcttgccg cgttttaaca cgtccttctc
5701 cagatttcca gttcaccttt ctggtcccac ctacagttga gtctaaaact aagaatttca
5761 cccttcccgt tcttagagtc tcagagatga caaattcaag gttccccgtt gttttggacc
5821 aaatgtacac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc aggtgcacga
5881 ctgacggtga gctgcttggc actaccatct tgcagtctgt gtctatttgc aattttaaag
5941 gaacaatgca ggcaaagctg aatgaagaac cacgatacca gttacaactc accaacttgg
6001 atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca ccagatttcc
6061 aggccgtgtt atatggcgtt gcaagccaac gctcttccag agacaatgcc accagggcac
6121 atgatgcaca gattgacact gcgggtgaca cattcgcccc gaaaattggc caggttcgtt
6181 ttaaatcaag ctctaatgat tttgacctac atgaccctac aaaattcaca cctattggtg
6241 ttaatgtgga tgatcagcac ccttttagac agtggtccct accaaactac ggtggtcacc
6301 ttgccctgaa caatcatttg gcccccgctg tgacaccact ctttcctggc gagcagattt
6361 tgttcttcag gtcatacatt ccaagcgccg gaggccacac agatggtgct atggactgct
6421 tgctgcccca agagtgggtg gagcacttct accaggaagc tgccccttcc caatctgaca
6481 tcgcactggt aaggttcatt aaccctgaca caggaagagt gctctttgaa gctaaattgc
6541 ataaacaagg tttcctcaca attgcagcat ctggagatca ccctattgtg atgcccacta
6601 atggttactt taggtttgaa gcttgggtca accctttcta tactctcgcc cccgtgggaa
6661 ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag gcttggcagg
6721 tgacgttgtg acttccagct tgggctcact tgtgggcgct ggagccaacg ccattaacca
6781 gaaagtggag tatgacttca acagacagct ccaggaggca tcttttagac atgataagga
6841 tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga tagacatcaa
6901 gcgggaggca ttgaccgcag gcggcttttc ccccgctgat gctgcaagag gtgcagttag
6961 agcgcctatg acacagattc ttgactggaa tggttctagg tattgggccc ccaactccat
7021 gaagacaact ggctattcag gtacatttgc ttcccaaggc attaaaagtt ccccccactt
7081 gtctaatcaa attccaagtg ctgttaaatc taccaaacct ttaccatcta tatctagttc
7141 ttctagtgta tatagttctc cttctactgc cccttcacaa tcaacacaat caacaacgct
7201 gtctgcagga acagggtcct ccagatctaa caccgtgtcc acaaagacct ctacactgtc
7261 gaggacaagt gactgggtca gaggtcaaaa tgagatgctt ggcccgttca tgagtggtgc
7321 actccaaact gcctatgtca caccaccatc gagcagggcc tcatcacaag ggacggtctc
7381 gaccgtaccc aaggctgttt tggactcctg gactcccatg ttcaacaccc acaggcagcc
7441 tctcttcgcc cacttgcgta ggcgagggga gtcacagatt tagtgaaaag gatgattagg
7501 gtttcttcct ttccccttct tattctttt
//