Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196277 | GII.5 | |
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| GII.P40 |
ORF1: 5..5140
ORF2: 5121..6743
ORF3: 6743..7519
LOCUS KJ196277 7554 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49, complete
genome.
ACCESSION KJ196277
VERSION KJ196277.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49
ORGANISM Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7554)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7554
/organism="Norovirus
GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49"
/mol_type="genomic RNA"
/isolate="Saitama/T49"
/host="Homo sapiens"
/db_xref="taxon:1529914"
/country="Japan"
/collection_date="2001"
/note="genotype: GII.P22_GII.5"
CDS 5..5140
/codon_start=1
/product="polyprotein"
/protein_id="AII73719.1"
/translation="MKMASNDAATATAGKTSTNSVIHNQDVNSTSSLFANMTVGLKRA
LGARPKQPAPRVPSPNREGKHETTPRAPPPNKGGKANIPPIPPPPPNGEDIVIKYTKQ
DDAVEGVPTVATVDVPPTHNTAYSVPPLDQREKIEAKEPLTGSILEMWDGEIYHYGLY
VEKGLVLGVHKPPAAISFARIELTPLSLYWRTVYTPPYLIAPETLRKLHGESFPYTAF
DNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLL
CGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGVVEALILLAELFGVFWTPPDIS
TFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREI
GNYGIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLAT
FLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVI
MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM
SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC
SRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPH
GKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHNRVAAFRRLAADNKYG
LMETIKVGNKLKGVKTLEQLKDALKDISIMPCRIVYNSMAYDLDSNGSGRVSVKKVVD
HKIQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRLNVSSIW
VRPEKQVEATEEPPSPPTEDWTITPANAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEY
DEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRVFRPTRK
QRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIV
NFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQVHRSGEFCKMRFPKAIRPDV
SGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSN
AKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGD
NHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQ
VMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYAQACASLDKTTSS
GHPHHMKKNVNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYE
KIKKRLLWGSDVGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKY
KYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKIT
INEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEIVSTDI
KLDPMKLTNKLKEYGLIPTRPDKTEGPLIVKENLDGLTFLRRDVCRDPAGWYGKLDQS
SIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPAFYKKVSKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5121..6743
/gene="VP1"
CDS 5121..6743
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73720.1"
/translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIVDVRTLEPVLLPMPD
VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
QLQACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 6743..7519
/gene="VP2"
CDS 6743..7519
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73721.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVSTSSMPPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKKGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctgc cactgcgacc gctggcaaaa ccagcacaaa
61 cagtgtaatt cacaaccaag atgtaaattc tacatctagc ctctttgcca acatgactgt
121 tggcctgaag agggccctgg gggcgagacc aaaacaaccc gcccccaggg ttccttcccc
181 caatagggag ggaaaacatg aaaccactcc tagagctccc cccccgaaca agggaggaaa
241 ggctaacatc ccaccaatac cacccccacc gcccaacggg gaggacatag tcatcaaata
301 taccaaacag gatgacgcgg ttgaaggggt gcccaccgtc gccacggttg atgttccccc
361 cacacacaac accgcttaca gtgtcccccc cctggatcag agggaaaaga ttgaagcgaa
421 ggagcccttg acaggttcga tacttgagat gtgggacggt gagatctacc actatggcct
481 ctacgtggag aagggcttgg ttcttggtgt gcacaaacct ccagctgcca taagctttgc
541 acgcatagag ctcactcccc tctctctata ctggagaaca gtctacactc caccttacct
601 gatagcccca gaaaccctaa ggaaactcca tggggagtca ttcccatata cagcctttga
661 caacaattgc tactccttct gctgctgggt cctggacctg aacgattctt ggctcaacag
721 gaaatttgtg tcaaggacca cgggtttcta caggccctac caagagtgga acagaaaacc
781 tttgccaacc atggatgaag gaaagctcaa gaaagtggcc aatgtgcttc tatgtggtct
841 ctctgggctt ttcactaggc ccatcaagga cctcataggg aagttgaggc cactaaacat
901 actaaacatc atcaccaatt gcgactggac cttccccgga gttgtggagg ctctcatact
961 gcttgcagag ctctttggag ttttctggac accaccagac atttccacct tcatagcttc
1021 acttctgggt gactatgaaa tgcagggccc cgaggatatc gcggttgaag tcgtaccggt
1081 gatcctcggc ggtataggca tggtacttgg attcaccaaa gaaagaattg gccgattgtt
1141 gagctctgcc gcttcctcac ttagagcatg cagggagatc ggtaactatg ggatagaggt
1201 agtgaagctg gtgatgaaat ggtttttccc caccaaagat gagacaaatg agatggatat
1261 ggtgagggca atagaggatg ctgttcttga ctttgaagcc atacagaaca atcacatgac
1321 agcattgctt aaagacaaaa acagccttgc aaccttcctc agggagctag atatggaaga
1381 ggaaaaggcg cggaagctat caacaaaatc tgcgtcccca gatattatcg gcaccataaa
1441 cgcccttcta gccaggattg ccgctgctag gtccctagtc cacaaggcca aggaagaaat
1501 gtcatctagg atgcgtcctg ttgtcatcat gatctccggc cggcccggaa tagggaagac
1561 gcatctggcc cgcgacctgg ctaagaagat ggcggcgacc ctctcaggtg accagagagt
1621 ggggctcgtg ccgaggaatg gtgttgacca ttgggatgca tataaaggag agaggatcgt
1681 actctgggat gattatggaa tgagcaaccc tgtgactgat gcgctgcggc tccaggagct
1741 tgccgacaca tgtcccctaa cgctcaactg tgatagaata gaaaataagg gaaaagtgtt
1801 tgacagtgac actataatca ttaccaccaa tttggccaat cctgctcctc tagattatgt
1861 caactttgaa gcttgctccc gccgaatcga cttccttgtc tatgcagact ccccctcggt
1921 ggacaaggcg aagagagact tccctggtca gccagacatg tggaaggatg cctttaaacc
1981 ggacttttca cacataaaac ttcagttggc accacaggga ggctttgata agaacgggaa
2041 cacccctcat gggaaaggtg tcatgaaaac gctaaccaca cactcactca tcgcccgcgc
2101 cacgggcctc ctacacgaaa gattggatga attcgacctg cagggacccg agttgcccgt
2161 gtacaatttt gaccataaca gggtggctgc tttcaggaga ctggcagctg acaacaagta
2221 tgggcttatg gaaaccataa aggtgggtaa caaattgaaa ggcgtcaaga ctctagaaca
2281 actcaaggac gctctaaaag acataagtat catgccttgc agaatagtct acaactcgat
2341 ggcttacgac ctcgattcga acggatcagg gagagtcagt gtcaaaaagg ttgtagacca
2401 caagatccaa accaacaacg agctcaattc cgcactcaac aacctgcgcg gcgccagagt
2461 gagatactat gttaaatgcg ttcaagagat ggtatattcc ctccttcaaa ttgctggcgc
2521 agccttcgtc acctcaagaa tgacacggag gttgaacgtc agcagcattt gggtcagacc
2581 agaaaagcaa gtggaggcca ctgaggaacc cccatccccc ccaactgagg actggactat
2641 aaccccagca aatgcagtcc aggaaggtaa aaagggcaag aacaagagcg gcagaggcaa
2701 gaaacacacc gccttctcca gtaaaggcct aagtgatgag gagtatgatg agtataaaag
2761 aatcagagaa gagagacaag gaaaatactc catagaagaa taccttcagg atagggatcg
2821 gtattatgaa gaattggcca tagccaaggc aacagaggag aacttctgtg aggaggaaga
2881 aataaaaatc agacagaggg tctttcgtcc gaccaggaaa caacgcaagg aagagagggc
2941 aactctagga ctggtcacag gcagtgaaat aaggaagagg aacccagatg atttcaagcc
3001 aagaggaaaa ttgtgggctg atgatgaccg cagtgtaaat tacaatgaga aaatagactt
3061 tgaagcgcct cccagccttt ggtcccgaat agtcaacttc ggatcaggtt ggggtttttg
3121 ggtttcttcc aacttgctca tcacatcaac acatgtcatc cccccgaaca tgactgaggc
3181 ctttggtgta ccaataagtc agatacaagt acatagaagt ggggagtttt gtaaaatgag
3241 gttccctaaa gctataagac ctgatgtctc aggcatgatc cttgaagaag gagctcccga
3301 gggaacggtg gtgaccatac tgatcaagag gaccaccggt gagctcatgc cactggccgc
3361 ccgaatgggt acccacgcca ccatgaaaat tcaagggaaa atgcttggag gccaaatggg
3421 catgcttctc acggggtcca acgccaagaa catggacctc ggtaccattc ctggagactg
3481 tggttgtccc tatgtttaca agaggggtaa tgattgggtg gtcatagggg tgcacaccgc
3541 agccgccaga ggtggcaaca ctgtgatttg tgccactcag gggccagacg gtgaggccac
3601 gcttgagggg ggagacaacc acgggactta ctgtggggca ccaatactcg gaccaggaag
3661 tgcaccaaaa ctcagcacca aaactaagtt ctggaggtca tccaacgccc cactcccgcc
3721 tggtacttat gagcccgcct acctaggcgg aaaggaccca agagtcaagg ggggaccatc
3781 actacagcaa gtcatgaggg aacaactcaa acctttcaca gccccccgag ggaagccacc
3841 acgaccggcg atcctggagg ctgctaagga aaccatctgt aatgtacttg agcagatcat
3901 tgacccaccc caaaaatggt cttacgctca ggcctgtgcc tctctggaca aaacaacatc
3961 cagtggccat ccccaccata tgaaaaagaa tgtcaactgg aacggagagt ctttcactgg
4021 tgtgttagct gaccaagctt ccaaggcaaa cctcatgttt gaacaaggga aacacatgca
4081 acctgtgtat actgctgccc tcaaagacga gctcgtcaag actagcaaga tctatgagaa
4141 aattaagaag aggctcctat ggggttcaga tgtgggcaca atgatccgct gtgctagggc
4201 ttttggaggc ctcatggatg agatgaaagc aaattgtgta aacttaccaa tcagagttgg
4261 catgaacatg aatgaagatg gacccatcat tttcgagaaa cattcaaagt ataagtacca
4321 ttatgatgct gactactcta ggtgggactc aacccaacag agacatatct tgggggctgc
4381 ccttgaaata atggttagat tctcagctga acctgaattg gcccaaattg tatctgaaga
4441 tctcctagcc cccagcgtgg tggacgttgg cgacttcaaa atcaccataa atgaaggttt
4501 accttctgga gtgccgtgca catcacaatg gaactcaatt tctcactggc taataacact
4561 atgtgccata tcagaaattt cagggctgtc gccagatgtg gtacaaacaa actcctgttt
4621 ctccttctat ggggatgatg agatagtcag cactgacatt aagttagatc ccatgaaact
4681 aaccaacaag ttgaaagagt atggactgat cccaacaaga ccagacaaga cagaggggcc
4741 actcatagtc aaagagaacc ttgatggctt gaccttcctg aggagggatg tgtgtcggga
4801 cccagctggt tggtatggaa aacttgatca atcctcaatc atgagacaat tgttctggac
4861 caaggggccc aaccatgacg accccaatga gacaatgatt ccacactccc agaggcccat
4921 acaactaatg tcgttgctgg gggaggcagc attacacggg ccagctttct acaagaaagt
4981 cagtaaatta gttatcactg agctcaaaga gggtggaatg gatttttacg tgccaaggca
5041 ggaacctatg tttaggtgga tgagattctc tgacctcagc acttgggagg gcgatcgcaa
5101 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgctactcca tcaaatgatg
5161 gtgctgccgg cctcgtgcca gaaagtaaca atgaggcaat ggctctggaa cccgtggtgg
5221 gggcgtcttt agccgcccct gtcactggcc aaactaatat aatagacccc tggattagaa
5281 ctaattttgt ccaagcccct aatggtgaat tcacagtttc ccctagaaat tcccctggag
5341 agatattggt caatttggag ttgggtccag aactgaaccc ttatctggca catttagcta
5401 ggatgtacaa tggctatgcg ggtggtatgg aggtgcaagt gatgctcgcg gggaacgcgt
5461 tcactgctgg caagatcatc tttgccgccg tgccacctta ctttccagtg gaaaatctta
5521 gcccttccca aataacaatg ttcccgcatg tgattgtcga tgttagaacc ttagaacctg
5581 tattgctccc aatgcctgat gtcagaagca ccctctttca cttcaatcaa aaggatgaac
5641 ctaagatgag acttgttgcc atgctttaca cccctcttcg ctccaatggc tctggtgacg
5701 acgttttcac tgtctcatgt aggatcctca ctaggccctc ccctgaattt gatttcacat
5761 acttggtgcc accaacagta gaatcaaaga ccaagccatt cacactacct gtgctgaccc
5821 tgggagaact gtccaattct agattccctc tctctattga tgaaatggtc accagcccta
5881 atgagtccat agttgttcag ccacagaatg gcagggtcac actagatggg gagctgttag
5941 gcacaaccca actgcaagca tgtaacattt gctccataag ggggaaagtg acaggacagg
6001 tccctaatga acaacacatg tggaacctgg agattacaaa cctaaatggg acgcaatttg
6061 accctacaga tgatgtccca gcccctcttg gtgtgcccga ctttgcaggt gaggtctttg
6121 gtgtactcag ccagagaaat agaggtgaaa gcaacccagc aaacagggct catgatgctg
6181 tcgtggctac ctacagtgat aaatacaccc ctaaattggg cttagtgcaa attgggactt
6241 ggaacaccaa tgatgttgaa aaccagccaa caaaattcac cccaattggt ctgaatgagg
6301 tcgccaatgg ccatcgattt gaacagtgga ctttgcctag gtattctggt gccctgacac
6361 taaatatgaa tttagctcct gctgtggccc cgctctttcc tggagagcgc ctccttttct
6421 tccgctctta cgtcccatta aaaggtggat ttggaaaccc tgctatagat tgtctagtgc
6481 ctcaggagtg ggtccaacat ttctatcagg aatctgcccc atctctgggg gatgtggcct
6541 tagtcaggta cgtcaaccca gacaccgggc gcgtcctttt tgaggccaaa ctccacaaag
6601 gtgggttcct gaccgtgtca agcactagca cagggcctgt tgtggtccca gccaatggct
6661 atttcagatt tgattcctgg gttaatcaat tttactctct tgcccccatg ggaactggga
6721 atgggcgcag aaggtttcag taatggcagg agctttcata gcaggtttag caggtgatgt
6781 gcttagtaat ggcctcggtt cgctgattaa tgccggagcc aatgctatca atcaaagagc
6841 agaatttgat tttaataggc aattgcaaca aaattctttc aaccatgata aggagatgtt
6901 aaatgcccaa attcaagcaa caaaacagtt gcaggctgat atgatagcaa tcaaacaggg
6961 agtcctagct gctgggggtt tctcaccaac tgatgcagcc agaggagctg tcaatgcacc
7021 catgacccaa gcactggatt ggagtggcac taggtactgg gcccctggtt caatgaagac
7081 caccagctat tctggaaagt ttgtgtccat gaatcctgtt aggcaggttg agttcccgca
7141 gcccaaaaag agtgcggcca taccatcaag cgccagctct gtgtcttctg gtaggaccaa
7201 ttttacaaat tctactcaat caactgtagt tagcacttcc tcaatgccac cttctagggg
7261 ttcgtctgct ccttctactc tgtcaagggc cacaactaga acctccaatt gggttgagga
7321 acaaaacagg aatttggaac cctacatgag gggcgccctc caaacaacat ttgtcacccc
7381 cccttccagc cgggcatcta gcaatggtac agtctcaact gtaccaaaag gtgttttgga
7441 ctcctggaca cctgcgttta acacccgcag gcagccgctt ttcgctcacc ttcgcaagaa
7501 gggggagtca caagcttagt gaaaagataa ttaatgatta ataattgatc tttt
//