Typing tool
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Typing tool
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Complete norovirus genomes
| KJ196276 | GII.13 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7447
LOCUS KJ196276 7491 bp RNA linear VRL 10-AUG-2014
DEFINITION Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80, complete
genome.
ACCESSION KJ196276
VERSION KJ196276.1
KEYWORDS .
SOURCE Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80
ORGANISM Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2014) Department of Virology II, National
Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
Tokyo 208-0011, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus
GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80"
/mol_type="genomic RNA"
/isolate="Saitama/T80"
/host="Homo sapiens"
/db_xref="taxon:1529915"
/country="Japan"
/collection_date="2002"
/note="genotype: GII.P12_GII.13"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="AII73716.1"
/translation="MKMASNDASAVAAANSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELITVRQPD
EVNTAFSVPPLNQRENRDAQEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENRYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKRCQIVYSGCTYTLESDGKGDVKVDRVQSATVQTNNELAGALHHLR
CAKIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETTNKNGC
PEPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERINFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPHGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDEFKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDVKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6713
/gene="VP1"
CDS 5085..6713
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AII73717.1"
/translation="MKMASNDAAPSNDGAASLVPEGINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNETNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANNGDNWDQNLLQLTYPNGASYDPTDEVPAPLGTQDFSGMLYG
VLTQDNVNVSTGEAKNAKGIYISTTSGKFTPKIGSIGLHSITEHVHPNQQSRFTPVGV
AVNENTPFQQWVLPHYAGSLALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLQGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6713..7447
/gene="VP2"
CDS 6713..7447
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AII73718.1"
/translation="MAGAFIAGLAGDMLTSAVSSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRVQVKSSSNSSQRTAAPSSIRSLSTQSTSVTGST
SLGGSSATSSSSRTADWVQQQRALSPYMHGALQTAYVTPPSSRASSVSSVSTVPKGVL
DSWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgtcgct gctgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacagagac ccccacgacc
181 acccacacca gaactggtca aaaagatccc tcctcccccg cccaacgggg aggatgaacc
241 agtggtttct tatagcgtca aagatggtgt ttccggcttg cctgagctta tcactgtcag
301 gcagccggat gaagtcaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgcccag gaaccactaa ctggaacaat tctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtctagt acttggcgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggaggccag tgtacacacc
541 tcagtatctc atctctccag acactctcag gaggctgcac ggagaatcgt tcccctatac
601 ggcctttgac aacaattgct atgccttctg ttgttgggtc ctggacctaa atgactcgtg
661 gttgagtagg agaatgattc agaggacaac tggtttcttt aggccctacc aagactggaa
721 taggaaaccc cttcctacca tggatgattc caagttgaag aaggtagcta acgtgttcct
781 gtgcgcgctt tcttcactat tcaccaggcc catcaaagac ataataggga agctgagacc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactgggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgtcccaata gtgatggggg ggattggttt ggtgctagga tttaccaaag agaagattgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgc aaagaccttg gtgcatacgg
1141 gctggaaatc ttaaaattag tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgagatcca tcgaggacgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 ccacatgact gcccttctta aagacaaaga tagcctggca acctacatga gaaccctcga
1321 cctcgaggag gagaaggcca ggaagctctc aaccaagtct gcttcacctg atatcgtggg
1381 tacaatcaac gctcttctgg cgagaatcgc cgctgcgcgt tccctggtgc atcgggcgaa
1441 ggaggagctc tctagcagac caagacctgt tgttgtgatg atatcaggca gaccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatt gcagcttccc tcacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg cgttgaccat tgggacgcat acaagggaga
1621 aagagtcgtc ctgtgggacg attatggaat gagtaatccc atccatgatg ccctcagatt
1681 gcaagaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaataaagg
1741 aaaggtattt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtt aactttgaag catgctcgag gcgcattgac ttcctcgtgt atgcagatgc
1861 ccctgaggtc gaaaaggcaa aacgtgactt cccaggtcaa cctgatatgt ggaagaacgc
1921 ttttagtcct gacttctcac acataaaact gacgctggct ccgcagggag gcttcgataa
1981 gaatggaaac accccacatg ggaaaggcgt catgaaaact ctcaccactg gctctctcat
2041 cgcccgagca tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaacttcg accgcaacaa ggtgcttgct tttagacagc ttgctgctga
2161 aaacaggtac gggttaatgg acacaatgag agttggcaga caactcaagg atgtcaggac
2221 catgccagag ctcaaacagg cactcaagaa tatctcaatc aagaggtgtc agatagtgta
2281 cagtggctgc acctacacgc ttgaatctga tggcaagggt gacgtgaaag ttgatagagt
2341 tcagagcgcc actgtgcaga ccaacaatga gctggctggt gccctacacc atctaaggtg
2401 tgccaaaatt agatactatg tcaagtgtgt tcaggaggcc ctgtactcca tcatccaaat
2461 tgctggtgct gcatttgtca ccacgcgcat cgtcaagcgc atgaatatac aagatctttg
2521 gtccaaacca caggtggaag atacagagga gactaccaac aagaatgggt gcccagaacc
2581 caaagatgat gaagagtttg tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaagaacaaa tctggccgtg gcaagaagca tacagcattc tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca agagaatcag agaagaaaga aacggcaaat actccataga
2761 agagtacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaggaag aagaagccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaggaggaga gagcctctct cggcctggtc acaggctctg aaatcagaaa
2941 aagaaaccca gacgatttca agcctaaagg gaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaac gagagaatca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtctc ccccagtctg ttcataacat caactcatgt
3121 cataccccat ggcgcacagg agttctttgg ggtttctatc aaacagattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc aggactgatg tgacaggcat
3241 gatcttagaa gaaggtgcgc ccgaagggac cgtggccaca ttactcatca agaggccaac
3301 tggggaactc atgcccttgg cggccagaat gggaacccat gcaaccatga agatccaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctaacagga tccaacgcca agagtatgga
3421 tctaggcacc acaccgggtg actgtggttg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cggctgccgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gagggagaag ccacacttga aggtggtgac agcaagggaa cctactgtgg
3601 tgcaccaatc ttaggtccag gcagtgcccc aaaactcagt accaagacta aattttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaagga
3721 ccccagagtc aagggtggtc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgagccc aggggcaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgagcaaa caattgatcc acctcaaaaa tggtcattcg cgcaagcatg
3901 cgcatccctc gacaagacca cctctagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
4021 gtacgaagag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaaaatcaa aaagaggctt ctctggggct cggacctggc
4141 gaccatgatc cggtgcgctc gggcttttgg gggcctgatg gatgaattta aggcacattg
4201 tgtcacactc cccgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 aagacactcc agatacaaat atcactatga tgctgattac tctcggtggg actcaacgca
4321 acagcgggcc gtattagcag cagccttaga aatcatggtt aagttctccc cagaacctca
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggatg taggtgattt
4441 caaaatatca atcaatgagg gcctcccctc cggggtaccc tgcacctccc aatggaattc
4501 catcgcccac tggcttctca ccctctgtgc actttctgag gtcacaaacc tgtcccctga
4561 cattatccag gccaattccc tcttttcctt ctatggtgat gatgaaattg tgagcacaga
4621 cgtaaagctg gacccagaga agctgacagc aaaactcaag gaatacgggc tgaaaccaac
4681 ccgccctgac aagactgagg ggccccttgt tatctctgag gacctgaatg gcttgacctt
4741 cctgcggagg actgtgaccc gcgatccagc tggctggttt ggaaaactgg aacagagttc
4801 aatacttagg caaatgtact ggactagggg ccctaatcat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt aatgtctttg ctgggcgagg ctgccctcca
4921 cggcccagcg ttctacagca aaatcagcaa gttagttatt gcagaactaa aggaaggtgg
4981 catggatttc tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatcaaat gatggtgcag ctagtctcgt accagagggc attaatgaga
5161 ctatgccatt ggaacccgtt gctggtgcat ctattgctgc cccagtggcg ggacaaacca
5221 acataattga cccctggata agaacaaatt ttgtacaagc ccctaatgga gagtttacag
5281 tgtcaccaag aaattcccct ggagaaattt tattaaattt agaattagga ccagatctga
5341 atccttattt ggcccatctt tcaagaatgt ataatggtta tgctggaggt gttgaggtgc
5401 aagtgctcct tgctgggaac gcgttcacag caggtaagat attgtttgca gcaatcccac
5461 ctaactttcc tgtagatatg attagcccag ctcaaattac tatgcttccc catttgattg
5521 tagatgttag gactttggaa cctattatga tacccttgcc tgatgttagg aatgtgttct
5581 atcattttaa taatcaacct caacctagaa tgagattagt ggctatgctc tacaccccat
5641 tgaggtctaa tggttcaggg gatgatgtct tcactgtgtc ttgtagagtg ctaactaggc
5701 caactcctga ttttgaattt atctatctgg tgcccccttc tgtagagtcc aaaactaaac
5761 cattcacact accaatatta accatttctg aattgaccaa ctcccggttc cctattccaa
5821 tcgagcaatt gtatacggct ccaaatgaga ccaatgttgt ccagtgtcag aatggcaggt
5881 gcaccttaga tggagagctc cagggcacaa cccagctgtt gtcaagtgca gtttgctctt
5941 acaggggcag gactgtggcc aataatgggg ataattggga ccaaaatttg ctccagctga
6001 cctatccaaa tggtgcaagc tatgacccca ctgatgaagt gccggcacca ttgggcactc
6061 aagattttag tgggatgttg tatggagtgt tgacccagga caatgtgaat gtgagcacag
6121 gagaggccaa aaatgctaag ggaatataca tatccaccac tagtgggaaa tttaccccaa
6181 aaattgggtc aattggattg cattcaataa ctgagcacgt gcaccccaac caacagtcgc
6241 ggttcacccc cgttggagtc gccgtgaatg agaacacccc cttccagcaa tgggttctac
6301 cacattatgc aggtagtctc gctctcaaca ccaatttggc acctgctgtt gccccgactt
6361 tccctggtga gcaattgctg ttcttcaggt cccgtgtccc atgtgtccaa ggcctacagg
6421 ggcaggatgc gttcatagat tgcctcctgc cccaagagtg ggtgaatcat ttttatcaag
6481 aggcagcccc ttcccaagca gacgtcgccc ttattaggta tgtcaaccct gatactggtc
6541 gcacgctgtt tgaagccaag ttgcatagat caggtttcat tactgtgtca catactggtg
6601 cttaccctct tgtagtcccc ccaaatggtc attttaggtt tgattcttgg gttaatcaat
6661 tttactcact cgcccccatg ggaactggca atgggcgtag aaggatccag taatggcagg
6721 agcatttata gctggtttgg ccggtgacat gctgacttct gctgttagtt cactgacctc
6781 tgcaggagcc aatgccatca atcagaaatt gaattttgat tacaacaaac aactccaaaa
6841 tgcatccttc cagcatgata aggaaatgtt gcaggctcaa attgatgcca caaagaaact
6901 tcaatctgaa atgattgcaa tcaagcatgg ggttttgacc gcgggcggct tttccccagc
6961 tgatgcagct agaggggcag tcaatgcccc aatgactaga gtgctggatt ggtcagggac
7021 acgttactat gctccaaatt ctgtgcaaac tactagctat tctggacaat tcaccccctc
7081 gccagtccac cgggtgcagg tgaaatcttc ttctaattca tctcagcgga ccgcagctcc
7141 aagcagcatc cgtagtctgt caactcaatc aacttctgta acaggctcta cctccctagg
7201 ggggtcctct gcaacctcct ctagctctag gacagcagac tgggtacagc aacagagggc
7261 tcttagtccg tacatgcatg gagccctgca gacggcatat gtcacaccgc cgtcaagcag
7321 ggcctccagt gtgagctctg tctcaacagt gcccaaaggg gttttggact cctggacacc
7381 tgtgtttaac acacgcaggc agccgctgtt tgcacacctc aggaagaggg gggagtcaca
7441 ggcttagtga aaaggatgat taatgcttaa gtatgatttt attttccttt t
//