Typing tool
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Typing tool
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Complete norovirus genomes
| KJ194507 | GII.1 | |
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| GII.P37 |
ORF1: 1..4107
ORF2: 4088..5695
ORF3: 5695..6326
LOCUS KJ194507 6326 bp RNA linear VRL 08-APR-2014
DEFINITION Norovirus Hu/GII/Amsterdam/3/1995 isolate NV_Amsterdam_3_1995,
partial genome.
ACCESSION KJ194507
VERSION KJ194507.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Amsterdam/3/1995
ORGANISM Norovirus Hu/GII/Amsterdam/3/1995
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 6326)
AUTHORS Cotten,M., Oude Munnink,B., Canuti,M., Deijs,M., Watson,S.J.,
Kellam,P. and van der Hoek,L.
TITLE Full genome virus detection in fecal samples using sensitive
nucleic acid preparation, deep sequencing, and a novel iterative
sequence classification algorithm
JOURNAL PLoS ONE 9 (4), E93269 (2014)
PUBMED 24695106
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6326)
AUTHORS Cotten,M., Oude Munnink,B., Canuti,M., Deijs,M., Watson,S.J.,
Kellam,P. and van der Hoek,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2014) Viral Genomics, Wellcome Trust Sanger
Institute, Hinxton, Cambridgeshire CB10 1SA, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 2.4.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6326
/organism="Norovirus Hu/GII/Amsterdam/3/1995"
/mol_type="genomic RNA"
/isolate="NV_Amsterdam_3_1995"
/host="Homo sapiens"
/db_xref="taxon:1472714"
/country="Netherlands"
/collection_date="30-Jan-1995"
/note="genotype: G2"
CDS <1..4107
/codon_start=1
/product="ORF1"
/protein_id="AHV83707.1"
/translation="PEDLAVELVPIVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDL
GAYGLEILKLVMKWFFPKKEEVSELAMVRAIEDAVLDLEAIENNHMTSLLKDKDSLAV
YMRTLDLEEEKARKLSTKSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVV
MISGNPGIGKTHLARELAKKIAGTLTGDQRVGLIPRNGVDHWDAYKGERIVLWDDYGM
SNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEAC
SRRIDFLVYAEAPDVEKAKRDFPGQPDMWKNAFSTDFSHIKLMLAPQGGFDKNGNTPH
GKGVMKTLTIGSLIARASGLLHERLDEYELQGPTLTTFNFDQNKVLAFRQLAAENKYG
LMETMRVGGQLKGVKTMPELKQALKNILIRRCQIVYGGVTYTLESDGKGCVKVDRVQS
TTVQTNNELAGTLHHLRCARIRYYVKCFQEALYSILQIAGAAFVTSRIVKRMNIQDLW
SKPQLENTEDTASKDGCLKPKDDEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGL
SDEEYDEFKRIRDERNGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIF
RPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSI
WSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPVKQIQVHKSGEFCRLRFPKP
IRTDVTGMILEEGAPEGTVASLLIKRPTGELMPLAARMGTHATMKIQGRVVGGQMGML
LTGSNAKNMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEAM
LEGADNKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGG
PSLQQVMRDQLKPFTEPRGKQPRPNVLEAAKRTIINVLEQTIDPPQKWTFAQACASLD
KTTSSGHPHHIRKNDCWNGDSFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKT
EKIYGTIKKRLLWGSDLATMIRCARAFGGLMEELKAHCVTLPIRVGMNMNEDGPIIFE
RHSRYKYHYDADYSRWDSTQQRAILAAALEIMVKFSSEPHLAQKVAEDLLSPSVMDVG
DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEI
VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFG
KLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 4088..5695
/codon_start=1
/product="ORF2"
/protein_id="AHV83708.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNTNGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPNNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLFNT
DHFDQWVLPNYSGRLTLNMNLAPSVSPLFPGEQILFFRSHIPLKGGTSDGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 5695..>6326
/codon_start=1
/product="ORF3"
/protein_id="AHV83709.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVSAPMTQVLDWNG
TRHWAPGATKTTSFSGGFTSSSHARTLDLPKKTTAAPAPTPVSRPSSSASTVSTRSTI
ISGSSNFPSSIRSTSSVSSQSTPSSSRVSEWVHNQNRALEPYMRGALQTA"
ORIGIN
1 cctgaggacc tcgcggtgga gttggtgcca atagtaatgg gggggatagg tttggtgtta
61 ggattcacca aagagaagat tgggaagatg ctgtcatctg ccgcgaccac attgagggct
121 tgtaaagacc tcggcgcata tggattggag atcttaaaat tagtcatgaa gtggttcttc
181 ccgaagaaag aggaagtgag cgagttggct atggtgaggg ccattgagga cgcggtgctg
241 gaccttgagg caattgaaaa caaccacatg acctctctac tcaaggacaa ggacagcctg
301 gcggtttata tgagaaccct cgaccttgag gaagagaagg ccaggaagct ctcaaccaag
361 tctgcctcac cggatatcgt aggcacgatc aatgctctcc tagcgaggat cgcagctgct
421 cgctctctag tccatcgggc aaaggaggag ctttccagca ggccaaggcc cgttgttgtg
481 atgatatccg gcaaccccgg gatagggaag actcatctcg ccagggaatt agccaagaaa
541 atcgcaggca ccctcacagg ggatcagaga gtaggtctca tcccgcgcaa cggtgtcgat
601 cactgggacg catacaaggg agagagaatc gtcctttggg atgactacgg gatgagcaac
661 cccatccatg atgctctcag aatacaagag cttgctgata cctgccctct aacattaaat
721 tgtgatagaa tagaaaacaa aggtaaagtg tttgacagtg atgtcataat catcaccacc
781 aatctagcca acccagcacc actggactat gtcaattttg aggcatgttc gaggcgcatc
841 gatttcctcg tgtatgccga agcccctgat gtcgagaagg caaaacgcga cttcccgggc
901 cagcctgaca tgtggaagaa tgctttcagc actgacttct cgcatataaa attgatgctg
961 gccccacagg gtggctttga caaaaacggt aacaccccgc acgggaaggg cgtcatgaaa
1021 accctcacca tcggttccct catcgctcgt gcttcagggc tcctccatga gaggttggat
1081 gaatacgagc tgcaaggccc taccctcaca accttcaact ttgaccaaaa taaggtgctt
1141 gctttcaggc agcttgctgc agaaaacaag tacggcttaa tggagacaat gagagttgga
1201 gggcaactta agggcgttaa gaccatgcct gagctcaaac aagcactcaa gaatatctta
1261 atcaggaggt gtcaaatagt gtacggtggt gtcacttaca cgcttgagtc tgatggtaag
1321 ggatgcgtga aggtagacag agtccagagt actactgtgc aaactaacaa tgagttggct
1381 ggtacccttc atcatctcag gtgtgccagg atcagatact atgtcaagtg cttccaggaa
1441 gccctatatt ccatactcca gattgcgggg gctgcatttg tcacctcgcg cattgtcaag
1501 cgcatgaaca tacaggatct ctggtccaag ccacagttgg agaacactga agacactgcc
1561 agcaaagacg ggtgccttaa gcctaaagat gacgaggagt tcgtcatttc atctgacgac
1621 attaaggctg agggtaagaa agggaagaac aagactggtc gtggtaagaa gcatacagct
1681 ttctcaagta aaggtctcag tgatgaggag tacgatgagt tcaaaagaat cagggatgaa
1741 agaaatggca agtactcaat agaagagtat ctccaagaca gagacaagta ctatgaggag
1801 gttgccattg ctagggcgac tgaagaagac ttctgcgagg aagaagaggc caagatccgc
1861 cagagaatct tcagaccaac cagaaaacaa cgcaaggagg agagagcctc tctcggcttg
1921 gtcacaggct ccgaaatcag gaagagaaac ccagatgatt tcaagcctaa aggaaaactg
1981 tgggccgatg acgacagaag tgtcgattac aatgagaagc tcagttttga ggcccccccg
2041 agcatctggt cgaggatagt taactttggt tcgggttggg gcttttgggt ctcccctagc
2101 ctattcataa catcaactca tgtcataccc cagggcgcac aggagttctt tggagtgccc
2161 gtcaaacaaa ttcaagtcca caaatcaggt gagttttgcc gcttgagatt cccaaagcca
2221 attagaactg atgtaacggg catgatcctg gaagaaggtg cccctgaagg gaccgtggcc
2281 tccctactca tcaagaggcc aactggtgag ctcatgccct tagcagccag gatgggcacc
2341 cacgcgacca tgaagatcca gggccgcgta gttggaggcc aaatgggcat gctcctaaca
2401 ggatccaacg ccaagaacat ggacctaggc accacacccg gtgactgcgg ctgcccctac
2461 atctacaaga gagggaatga ctatatagtc atcggagtgc acacagctgc cgcccgaggg
2521 ggaaacaccg ttatatgtgc cacccaaggg agtgaaggtg aagcaatgct tgagggtgct
2581 gacaacaaag gtacctactg tggcgcccca atcttgggtc caggaagtgc cccgaaactc
2641 agcaccaaga ccaaattttg gagatcatcc acaacaccac tcccccctgg cacttatgaa
2701 ccagcctatc tcggtggtaa ggatcccaga gtcaaaggcg gcccctcact gcaacaagtt
2761 atgagggacc agttgaaacc cttcacagaa ccgagaggta agcaaccaag accaaatgtg
2821 cttgaggccg ccaaaagaac catcattaat gtccttgaac aaacaataga cccacctcag
2881 aaatggacgt tcgctcaagc ttgtgcatcc cttgataaaa ccacctccag tggccatcca
2941 caccacataa ggaaaaatga ctgctggaac ggggactcct tcacaggcaa gttggcagat
3001 caggcctcaa aagccaattt gatgtatgaa gaggggaaga acatgacccc agtctacact
3061 ggcgccctta aggatgagtt ggtcaagact gaaaagatat atggtacaat caaaaagaga
3121 cttctttggg gctcagacct agcaaccatg atccggtgtg ctcgggcgtt tgggggtcta
3181 atggaagaac ttaaggccca ctgtgtcaca cttcccatca gagttggcat gaatatgaat
3241 gaggatggac ccatcatctt tgagagacac tccaggtaca aatatcacta tgatgcagat
3301 tactcccgat gggactctac acagcaaagg gctatattag ctgcagccct agagatcatg
3361 gtaaaatttt cctcagagcc acacttggct cagaaagttg ctgaggatct cctttcccca
3421 agtgtgatgg atgtgggtga tttcaagata tcaatcaatg aaggccttcc ttccggggta
3481 ccctgtacct cacaatggaa ctccatcgcc cactggcttc tcactctttg tgcactttct
3541 gaagtcacgg acctgtctcc cgacattatt caggctaact ctctgttttc tttctatggt
3601 gatgatgaga ttgtgagcac agatataaaa ttggacccag aaaagttgac agcaaaactg
3661 agggagtatg gattgaaacc aacccgcccc gataagactg agggacctct gatcatttct
3721 gaagacctag atggcttgac ctttctgcgg agaaccgtga cccgtgaccc agccggttgg
3781 tttgggaagt tagaccagag ttcaatacta aggcagatgt actggactag gggccccaac
3841 cacgaagacc catctgaaac aatgatacca cattctcaaa gacccataca attgatgtcc
3901 ctactaggtg aagccgcact acacggtcca gcattttaca gcaagatcag caaactggtg
3961 attgcagagt taaaggaagg tggcatggat ttttacgtgc ccaggcaaga gccgatgttc
4021 agatggatga gattctcaga cctgagcacg tgggagggcg atcgcaatct ggctcccagt
4081 tttgtgaatg aagatggcgt cgaatgacgc cgctccatct aatgatggtg cagccggtct
4141 cgtaccagag gtcaacaacg agacgatggc acttgaaccg gtggctgggg cttccatagc
4201 tgccccccta accggtcaaa acaatgtgat agacccctgg attagaatga actttgttca
4261 agccccaaat ggtgaattta cagtgtctcc ccgtaattcc ccaggtgaag tattgctaaa
4321 tttggaatta ggtcctgaac tgaatccatt cttggcgcac ctttcgagaa tgtacaatgg
4381 ttatgcaggc ggggttgaag tgcaggtgct gcttgctggg aatgcgttca cagcagggaa
4441 actggtattt gcagcaatcc ctccgcattt ccctcttgag aatttgagtc ctggacaaat
4501 taccatgttc cctcatgtaa ttattgatgt tagaacacta gaacctgttc ttttacctct
4561 cccagatgtt agaaataatt tctttcatta taatcagcaa cccgagcccc gtatgaggct
4621 tgtggctatg ttgtatactc ctcttagatc taatggctct ggtgatgatg tgttcacagt
4681 ttcttgtagg gtccttaccc gcccttctcc agattttgat ttcaattatt tggtcccccc
4741 aactgtggag tctaaaacca aaccatttac cctgccaatc ttgactattg gagaattgtc
4801 aaattctagg ttcccagtcc caatagatga attgtacacc agtcccaatg aaggagtggt
4861 tgtgcaacct caaaatggta gatcaacact cgatggtgag ttgctgggca ctacacaact
4921 tgtaccctca aacatctgtg cgttgcgagg gcgtatcaat gcccaagtgc cagatgacca
4981 ccatcaatgg aacttgcagg tcacaaatac aaatgggact cccttcgatc ccaccgaaga
5041 cgtccctgca ccattgggca cgccggactt cctggcaaac atttatggag ttaccagtca
5101 gagaaacccc aacaacactt gccgtgccca cgatggggtc ttggcaacct ggagccctaa
5161 atttacaccc aaattagggt ctgttgttct gggcacttgg gaagaaagtg accttgacct
5221 taatcaaccc acaagattca cacctgttgg cttgtttaat acagaccact tcgatcagtg
5281 ggttctacct aactattctg gaagactgac cttgaatatg aatttggcac cctctgtgtc
5341 ccccctcttt ccaggtgagc aaatactctt ctttaggtcc catataccac tcaagggggg
5401 cacttctgac ggtgccattg actgcttgct cccccaagaa tggattcagc atttttacca
5461 ggaatcagcc ccgtcgccca cggacgtggc tctaattagg tacaccaatc ctgatacggg
5521 tcgagttttg tttgaggcta aattacacag gcaaggattc atcacagtgg caaattctgg
5581 ctctaggcct attgttgttc ctcctaatgg ctattttaga tttgattctt gggttaatca
5641 gttttattct cttgccccca tgggaactgg taatgggcgc agaagggtgc agtaatggct
5701 ggagctttta tagcaggact tgctggtgac atagtcacca atggtattgg atcacttgtg
5761 aatgctggag caaacgcaat aaaccaaaaa gtggactttg aaaacaataa acaactacaa
5821 caggcctctt ttaatcatga caaggaaatg ttgcaagccc agatccaggc cacaaaacag
5881 ctacaggctg atatgattgc actcagacaa ggggtgttga ccgcgggcgg cttctctcct
5941 actgatgcag caagaggggc ggttagtgca cctatgacgc aagtcttgga ctggaatggg
6001 actaggcatt gggcccccgg agccacaaaa acaacttctt tctccggtgg gttcactagc
6061 tcttcccatg ctagaactct tgatttgccc aagaagacaa cagctgcacc agccccgacg
6121 cctgtgtcta gacccagttc ttctgcttct acagtttcca ctcgctcaac aatcattagc
6181 ggatcttcta actttccttc ctcgattagg agcacctcta gtgtttcttc ccaatctacc
6241 ccctcttcct cccgggttag tgaatgggta cacaatcaaa atagggcgct ggagccttac
6301 atgaggggag cgctacaaac agctta
//