Typing tool
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Typing tool
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Complete norovirus genomes
| KJ184256 | GII.3 | |
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| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3697
ORF3: 3697..4008
LOCUS KJ184256 4008 bp RNA linear VRL 01-AUG-2019
DEFINITION Norovirus GII strain
Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N2660/2011 nonstructural
polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete
cds; and VP2 (ORF3) gene, partial cds.
ACCESSION KJ184256
VERSION KJ184256.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4008)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 4008)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 4008)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2014) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine, 8
Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 4 (bases 1 to 4008)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine, 8
Lavrentiev Avenue, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On May 8, 2019 this sequence version replaced KJ184256.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4008
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N2660/2011"
/isolate="Hu/GII.3/Novosibirsk/Nsk-N2660/2011/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 9 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="06-Aug-2011"
/note="genotype: GII.P21/GII.3"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCO68842.1"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGTQEFFGVPIKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTH
ATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGNEGEATLEGSDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPMPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQT
IDPPQRWTYAQACASLDKTTSSGHPYHMRKNDCWNGETFTGKLADQASKANLMFEEGK
NMTPVYTGALKDELVKTDKIYGVIKKRLLWGSDLSTMIRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHL
AQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
mat_peptide <1..537
/gene="ORF1"
/product="Pro"
mat_peptide 538..2067
/gene="ORF1"
/product="RdRp"
gene 2051..3697
/gene="ORF2"
CDS 2051..3697
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO68841.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 3697..>4008
/gene="ORF3"
CDS 3697..>4008
/gene="ORF3"
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="AWH61279.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TR"
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttt ggctcagggt ggggtttttg ggtctcgccc
61 agcctcttca taacatcaac ccatgtcatt ccccaaggca cacaggagtt cttcggagtg
121 cccattaaac aaatacaaat tcacaagtca ggtgagtttt gccggcttag gttcccaaaa
181 ccaatcagga cagatgttac aggcatgatc ttggaggaag gtgctccaga aggcactgtt
241 gccacacttc tcatcaagag accaactggg gaactcatgc ccttggcagc cagaatgggc
301 acccacgcta ccatgagaat tcagggtcgc actgttggtg gacagatggg catgctactc
361 acagggtcta acgccaagag catggatttg ggcacaactc ctggcgattg tggttgtccc
421 tacatctaca agagagggaa cgactacgtg gtcattggag ttcacactgc cgccgctcgt
481 ggaggaaaca ccgtcatctg tgcaacccaa ggaaacgagg gtgaggccac gctagaaggt
541 agtgacaaca agggaactta ctgtggagca ccaatattag gccctggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ttggaggtct tccaccaccc ccatgccacc cggaacctat
661 gagccagctt atctgggtgg caaggaccct agagtgaaag gtggcccctc actgcaacag
721 gttatgaggg accaactaaa gccattcact gagcccagag gcaaaccacc taaaccaagt
781 gtgttagaag ccgccaagaa gactataatc aatgtgcttg aacaaacaat agacccacct
841 caaagatgga catacgcaca agcgtgtgca tcactagaca agaccacttc cagcggccac
901 ccttaccaca tgcggaagaa cgattgctgg aatggggaaa ctttcacagg aaaactggca
961 gaccaagcat caaaggctaa tctaatgttt gaggaaggaa agaacatgac cccagtatac
1021 acaggagctc tgaaagatga actagtcaag actgataaga tctatggggt aatcaagaag
1081 agactcctgt ggggttcaga cctatctacc atgatacggt gtgcacgagc cttcggtggg
1141 ctaatggacg agctcaaggc ccattgcgtc acactaccag tcagggttgg tatgaacatg
1201 aatgaggatg gacccataat atttgagaaa cattccagat acaaatacca ttatgatgca
1261 gattactccc gctgggactc aacacaacaa agagcagtac tggctgcagc cctggaaata
1321 atggtcaaat tctcaccaga accccatctg gcccaagtag ttgcagaaga cctcttgtcc
1381 cccagtgtga tggacgtggg tgatttcaag atatcaatca acgagggatt accttctggt
1441 gttccttgca cctcacaatg gaactccatt gcccactggc tcctcacact atgtgcactg
1501 tctgaagtca cagacctgtc tcctgatatc atccaggcga attccctgtt ctccttttat
1561 ggtgatgatg aaatagtgag cacagacatc aaattggacc cagagaaatt gacaacaaaa
1621 ttgaaggaat acgggctcaa accaacccgt cctgataaaa cagaaggacc cttaattatc
1681 tctgaagatt tggatggcct gaccttcttg cggagaacag tgacccgtga tccggccgga
1741 tggtttggca aactggacca aagttcaata ctcaggcaga tgtactggac caagggacca
1801 aaccatgagg acccctttga aacaatgata ccacactccc aaagacccat acaactgatg
1861 tcattactgg gtgaagctgc attgcatggt ccatcattct acagtaaaat cagcaaattg
1921 gtcatctcag aattgaaaga gggtggaatg gatttttacg tgcccagaca ggaaccaatg
1981 ttcaggtgga tgagattctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgccgccgg
2101 cctcgtccca gagatcaata atgaggcaat ggcgctagag ccagtggcgg gtgcagcgat
2161 agcagcaccc ctcactggtc agcaaaatat aattgatccc tggattatga ataattttgt
2221 gcaagcacct ggtggtgagt tcacagtatc ccccagaaat tcccctggtg aagttcttct
2281 taatttggaa ctgggcccag aaataaatcc ctatttggcc catcttgcta gaatgtataa
2341 tggttatgca ggtggatttg aagtgcaggt agtcctagct ggaaatgcgt ttacagcagg
2401 aaagataatc tttgcagcta ttccccccaa ttttccaatt gacaatctaa gtgcagcaca
2461 gatcacaatg tgcccacatg tgattgtgga tgtcagacag ttggaaccag tcaacctccc
2521 gatgcctgac gttcgcaata acttctttca ttacaatcaa gggtctgatt cgagattgcg
2581 cctaatagca atgttgtata cacctcttag ggctaataat tctggggatg atgttttcac
2641 tgtgtcttgc agagtgctaa ctagacctag tcctgacttc tcatttaatt tccttgtgcc
2701 acctactgtg gagtcaaaga caaaaccctt ttccctccct attctgacta tctctgaaat
2761 gtccaattct aggttcccag taccaattga ttctctgcac accagtccta ctgagaatat
2821 tgttgttcag tgccagaatg ggcgcgtcac ccttgatggt gagttgatgg gcaccaccca
2881 actcttacct agtcaaatct gtgctttcag gggcgttttg accagatcaa caagcagggc
2941 cagtgatcag gccgatacag caactcctag attgtttaat tattattggc atatacaatt
3001 ggacaatcta aatggaaccc cttatgatcc tgcagaagac ataccaggcc ccctagggac
3061 accagatttc cggggcaaag tctttggcgt ggccagccag agaaatcctg atgccacgac
3121 cagggcacat gaagcaaaga tagacacaac atctggccgc ttcaccccaa agctaggctc
3181 attagagata tccactgaat ctgatgattt tgatcaaaac caaccaacaa gattcacccc
3241 agttggcatt ggggttgacc atgaggcaga ctttcaacaa tggactctac ccgactacgc
3301 tggccagttc acacacaaca tgaacttagc cccagctgtt gctcctaact tccctggtga
3361 gcagctcctt ttcttccgct cacagttgcc atcttctggt gggcgatcca acgggattct
3421 agactgcctg gtcccccaag aatgggtaca gcacttctac caggaatcag ccccctctca
3481 gtctcaagtg gccctggtta ggtatatcaa ccctgacact ggtagagtgt tatttgaggc
3541 caagctgcac aaattaggtt tcatgactat agccaagagt ggtgattctc caataactgt
3601 ccctccaaat ggatacttta ggtttgaatc ttgggtgaac cccttttaca cacttgcccc
3661 catgggaact gggaatgggc gtagaaggat tcaataatgg ctggagcttt tatagcagga
3721 ttggctggtg acatgcttac aaatactgta ggatctttag ttaatgcagg ggctaatgct
3781 atcaatcaaa caattgattt tgaaaataat aagtacttgc aaaatgcttc tttcaatcat
3841 gataaggaga tgttgaatgc acaaattgag gcaacaaaga ggttacaggc tgacatgatt
3901 gctatcaaac aaggggtttt gaccgctggc ggcttctccc ccactgatgc agcccgtggg
3961 gcaattaatg cccccatgac aaaagtccta gattggaatg gaacgaga
//