Typing tool
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Typing tool
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Complete norovirus genomes
| KJ184223 | GII.3 | |
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| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193
LOCUS KJ184223 3193 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus GII strain Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N48/2010
RNA-dependent RNA polymerase (POL) gene, partial cds; major capsid
protein VP1 (VP1) gene, complete cds; and minor capsid protein VP2
(VP2) gene, partial cds.
ACCESSION KJ184223
VERSION KJ184223.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2014) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine, 8
Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 4 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Feb 2, 2018 this sequence version replaced KJ184223.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3193
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N48/2010"
/isolate="Hu/GII.3/Novosibirsk/Nsk-N48/2010/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 5 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="07-Mar-2010"
/note="genotype: GII.P21/GII.3"
gene <1..825
/gene="POL"
CDS <1..825
/gene="POL"
/note="ORF1; RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AIS24763.2"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2452
/gene="VP1"
CDS 806..2452
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX15007.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLSGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVMTRSTSRASDQADTAIPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..>3193
/gene="VP2"
CDS 2452..>3193
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX15008.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPASTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN
1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtactggct
61 gcagccctgg aaataatggt caaattctca ccagaacccc atctggccca agtagttgca
121 gaagacctct tgtcccccag tgtgatggat gtgggtgatt tcaagatatc aatcaacgag
181 ggattaccct ctggtgttcc ttgcacctca caatggaact ccattgccca ctggctcctc
241 acactatgtg cactgtctga agtcacagac ctgtctcctg atatcatcca ggcgaattcc
301 ctgttctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag
361 aaattgacaa caaaattgaa ggaatacggg ctcaaaccaa cccgtcctga taaaacagaa
421 ggacccttaa ttatctctga agatttggat ggcctgacct tcttgcggag aacagtgacc
481 cgtgatccgg ccggatggtt tggcaaactg gaccaaagtt caatactcag gcagatgtac
541 tggaccaagg gaccaaacca tgaggacccc tttgaaacaa tgataccaca ctcccaaaga
601 cccatacaac tgatgtcatt actgggtgaa gctgcattgc atggtccatc attctacagt
661 aaaatcagca aattggtcat ctcagaattg aaagagggtg gaatggattt ttacgtgccc
721 agacaagaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caataatgag gcaatggcgc tagagccagt
901 ggcgggtgca gcgatagcag cacccctcag tggtcagcaa aatataattg atccctggat
961 tatgaataat tttgtgcaag cacctggtgg tgagtttaca gtctccccta gaaattcccc
1021 tggtgaagtt cttcttaatt tggaattggg cccagaaata aatccctatt tggcccatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtggtcc tagctggaaa
1141 tgcgtttaca gcaggaaaga taatctttgc agctattccc cccaattttc caattgacaa
1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
1261 accagtcaac ctcccgatgc ctgacgtccg caacaacttc tttcattaca atcaagggtc
1321 tgattcgaga ttgcgcctaa ttgcaatgct atacacacct cttagggcta ataattctgg
1381 ggatgatgtt tttactgtgt cttgcagagt gctaactaga cctagtcctg acttctcatt
1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctattct
1501 gactatctct gaaatgtcca attctaggtt cccagtacca attgattctc tgcacaccag
1561 tcctactgag aatattgttg ttcagtgcca gaatgggcgc gttacccttg atggtgagtt
1621 gatgggcacc acccaactct tacctagtca aatctgtgct ttcaggggcg ttatgaccag
1681 atcaacaagc agggccagtg atcaggccga cacagcaatt cctagattgt ttaattatta
1741 ttggcatata caattggaca atctaaatgg aactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag atttccgggg caaagtcttt ggcgtggcca gccagagaaa
1861 tcctgatgcc acgaccaggg cacatgaagc aaagatagac acaacatctg gccgcttcac
1921 cccaaagcta ggctcattag agatatccac tgaatctggt gattttgatc aaaaccaacc
1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggac
2041 tctacccgac tacgctggcc agttcacaca caacatgaac ttagccccag ctgttgctcc
2101 taacttccct ggtgagcagc tccttttctt ccgctcacag ttgccatctt ctggtgggcg
2161 atccaacggg attctagact gcctggtccc ccaagaatgg gtacagcact tctaccaaga
2221 atcagccccc tctcagtctc aagtggccct ggttaggtat atcaaccctg acactggtag
2281 agtgttattt gaggccaagc tgcacaaatt aggtttcatg actatagcca agaatggtga
2341 ttctccaata actgtccctc caaatggata ctttaggttt gaatcttggg tgaacccctt
2401 ttacacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gcttttatag caggattggc tggtgacatg cttacaaata ctgtaggatc tttagttaat
2521 gcaggggcta atgctattaa tcaaacaatt gattttgaaa ataataaata tttgcaaaat
2581 gcttctttca atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta
2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccccact
2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg
2761 agatactggg caccaggtgc cacctccaca acctcgatgt cgggtggctt tacaaatcaa
2821 actgtgcaca gatccacacc aaattttaaa acgaaccagg ctcccaaatc cacacccagc
2881 agtgggtctt cagtgaggtc aaattcaacc caaatcacta gcctgagctc acactcgtcc
2941 gggtcgtctc gatccagcgg gtctacagtt gtcagttcaa taccatcctc taacaggact
3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg gtctcttagg
3061 acagcttttg tcactccacc agctagtaca gcctctagct caggcacagt ctcaaccgtg
3121 cccaaaaatg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctattc
3181 gcacaccttc gca
//