Typing tool
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Typing tool
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Complete norovirus genomes
| KJ156329 | GII.17 | |
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| GII.P17 |
ORF1: 1..1286
ORF2: 1267..2883
ORF3: 2883..3662
LOCUS KJ156329 3723 bp ds-RNA linear VRL 31-DEC-2014
DEFINITION Norovirus 13-BH-1/2013/GII.17 nonstructural protein gene, partial
cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION KJ156329
VERSION KJ156329.1
KEYWORDS .
SOURCE Norovirus 13-BH-1/2013/GII.17
ORGANISM Norovirus 13-BH-1/2013/GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3723)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.17 strain
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3723)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3723
/organism="Norovirus 13-BH-1/2013/GII.17"
/mol_type="genomic RNA"
/isolate="13-BH-1/2013/GII.17"
/isolation_source="stool specimen from a 31-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1508693"
/geo_loc_name="Taiwan"
/collection_date="Oct-2013"
CDS <1..1286
/note="ORF1"
/codon_start=3
/product="nonstructural protein"
/protein_id="AID51512.1"
/translation="ESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRK
NDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLW
GSDLSTMIRCAKAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADY
SRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSG
VPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLT
AKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYW
TRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYV
PRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1267..2883
/note="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="AID51513.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 2883..3662
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AID51514.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVRMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSFSPFMSGALNISHVTPPSSR
ASSFGTVSTVPKEVLDSWTFAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tagagtcagc aaagaagact atcatcaatg ttctggaaca aaccattgac ccccctcaaa
61 agtggtcata tgcccaagct tgtgcatccc tcgacaagac gacctccagt ggatacccgc
121 accacgtccg gaagaatgac tattggagtg gtgaatcctt cacagggaaa cttgcagacc
181 aggcttcaaa agcaaatctc atgtatgagg aaggcaagca catgcaacca gtttacaccg
241 cagcactcaa agacgagctc gtgaaaactg acaaaattta tggcaagatc aagaaaagac
301 tcctgtgggg ttctgacctc tccaccatga ttcgatgtgc caaagcattt ggtggtctca
361 tggatgagct caaagcaaat tgtattacac tccctatcag agttggtatg aatatgaatg
421 aagacggtcc cataatattt gagaaacact ccaggtacag gtaccactat gatgctgatt
481 actcccgctg ggactccaca caacagcggg cagtgctgga agcggcactt gaaatcatgg
541 tgagattttc tgctgagcca cagctggcac aaatagtggc agaggacctg ctgtcaccaa
601 gtgtggttga tgtgggcgat ttcaaaatcg ctatcaatga aggcctacca tctggcgtgc
661 cttgcacctc acaatggaat tctattgccc actggttact caccctgtgt gctctttctg
721 aagtgacagg actaggtcct gacatcatac aagccaactc catgtactct ttctatggtg
781 atgatgagat tgtgagcaca gacataaaat tggacccaga gaaattgacc gcaaagctca
841 aagaatatgg ccttaaaccc actcggcccg acaaaactga ggggccgctg gtgattagtg
901 aagacctgaa tgggttgact ttcctccgcc gaacagtcac ccgtgatcca gcaggttggt
961 ttggaaagtt ggaccaaaac tccatcctca ggcagttgta ctggacaaga ggacccaacc
1021 atgaagaccc cagtgagacc atgataccac acgcacaaag acctgtgcag ctcatggcac
1081 tactaggaga atcctcccta catggaccct cattttacag caaggttagc aaactggtca
1141 tatctgaact taaagaggga ggaatggatt tttatgtgcc cagacaagag tcaatgttca
1201 gatggatgag gttctcagat ctaagcacat gggagggcga tcgcaatctg gctcccagtt
1261 ttgtgaatga agatggcgtc gaatgacgcc gctccatcta atgatggtgc tgctggtctc
1321 gtaccagagg gcaacaacga gacccttccc ctagaaccag ttgcgggcgc agctatagcc
1381 gcacccgtca ctggccaaaa caacataatt gacccctgga ttagaacaaa ttttgtgcaa
1441 gcaccaaatg gagagttcac agtgtcaccc agaaactccc ctggagaaat tttactaaac
1501 ctagagttgg gccctgattt gaacccttat ttggctcatt tatcaaggat gtacaatggg
1561 tatgctggtg gagtggaagt tcaggttctc ctggcaggga acgcgttcac tgccggaaag
1621 atcctcttcg ccgccgtccc gccaaatttc ccagtggaat tcttaagccc agcccagatt
1681 acaatgctcc cacatttaat agtagatgta aggactcttg aaccaattat gatcccactc
1741 cctgatgtta ggaatacatt cttccattat aacaaccagc ctaacagccg catgagatta
1801 gtggctatgc tctacacccc ccttagatct aatggctcag gtgatgatgt ctttactgtc
1861 tcttgcaggg ttttgactag gcctactcct gattttgagt tcacttattt agtgccacct
1921 tctgttgaat ctaagactaa gcctttttcc ttacctattt taaccctttc tgagctcaca
1981 aattcgaggt tcccagtccc catcgattcg cttttcaccg cccagaataa tgtgttgcag
2041 gtgcagtgtc aaaatggcag gtgcacactt gatggtgagt tacaaggcac aacccagttg
2101 ctcccatctg gcatctgtgc attcagagga cgggtgacag cagaaactga ccaccgtgac
2161 aagtggcaca tgcaactgca aaacctcaat ggcacaacat atgacccaac tgatgatgtg
2221 ccagccccgc tgggtacacc tgacttcaag ggcgtcgtgt ttggggtagc aagccaaaga
2281 aatgtgggta atgatgcgcc tggctcaacc agggcccatg aggcggtgat ttcaacctat
2341 agcccccaat ttgtccccaa attaggttct gtcaatttta gaagtaatga taatgatttc
2401 caattgcagc cgacaaaatt cacaccagtg ggcatcaatg acgatggtga ccacccgttc
2461 agacaatggg aactaccaga ctattcaggg ctgcttacct tgaatatgaa ccttgccccc
2521 ccggttgctc caaatttccc tggtgaacaa ttattattct tcagatcttt tgtgccatgc
2581 tcaggaggtt ataaccaagg cattgtagat tgtcttatac cccaagaatg gatccaacac
2641 ttctatcagg aatcagcgcc ctcccagtca gacgtggccc taatcaggta tgttaacccc
2701 gacacgggac gcacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct
2761 cactctggag actatcctct tgttgttccg gctaatggat actttagatt tgattcttgg
2821 gtaaatcagt tttattcact cgccccaatg ggaactggga atgggcgaag gagggctcag
2881 taatggctgg agctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct
2941 ccctggtgaa cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac
3001 aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgaaggcaa
3061 ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct
3121 tttcccccac tgatgcagca aggggagcca ttggtgcacc catgacaaag gtgcttgact
3181 ggtctggcac tcgatactgg gcacccaact ccacaaagac aactggttat tcgggacaat
3241 tcacctcttc acctgtgcgc atgcctagcc caaatgctcc acaatcaaaa cctgcaaagc
3301 ctaggtctct agctccttcc tcttcttcta gtagtgtcta tagtatgtct actcaatcaa
3361 ctcatttaac atctggctct tctagtaatg cttcttctgc ctctacaaaa ttgacaaact
3421 taagctctgg ctcctctcaa aacagaacag cagagtgggt gaaccaacag agaagtttta
3481 gcccttttat gagtggcgca ctcaatatct cacatgtcac gccaccctca agtagggctt
3541 ccagttttgg gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtttgcgt
3601 ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt
3661 agtgaaaaga aataattggc tataatgtga tttcttttaa aatttggcta atttgtatct
3721 tta
//