Typing tool
|
Complete norovirus genomes
KJ156329 | GII.17 | ||
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GII.P17 |
ORF1: 1..1286 ORF2: 1267..2883 ORF3: 2883..3662LOCUS KJ156329 3723 bp ds-RNA linear VRL 31-DEC-2014 DEFINITION Norovirus 13-BH-1/2013/GII.17 nonstructural protein gene, partial cds; and capsid protein and minor structural protein genes, complete cds. ACCESSION KJ156329 VERSION KJ156329.1 KEYWORDS . SOURCE Norovirus 13-BH-1/2013/GII.17 ORGANISM Norovirus 13-BH-1/2013/GII.17 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3723) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.17 strain JOURNAL Unpublished REFERENCE 2 (bases 1 to 3723) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (16-JAN-2014) Centers for Disease Control Department of Health, Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..3723 /organism="Norovirus 13-BH-1/2013/GII.17" /mol_type="genomic RNA" /isolate="13-BH-1/2013/GII.17" /isolation_source="stool specimen from a 31-year female with diarrhea" /host="Homo sapiens" /db_xref="taxon:1508693" /country="Taiwan" /collection_date="Oct-2013" CDS <1..1286 /note="ORF1" /codon_start=3 /product="nonstructural protein" /protein_id="AID51512.1" /translation="ESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRK NDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLW GSDLSTMIRCAKAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADY SRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSG VPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLT AKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYW TRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYV PRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 1267..2883 /note="VP1" /codon_start=1 /product="capsid protein" /protein_id="AID51513.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 2883..3662 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AID51514.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVRMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSFSPFMSGALNISHVTPPSSR ASSFGTVSTVPKEVLDSWTFAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 tagagtcagc aaagaagact atcatcaatg ttctggaaca aaccattgac ccccctcaaa 61 agtggtcata tgcccaagct tgtgcatccc tcgacaagac gacctccagt ggatacccgc 121 accacgtccg gaagaatgac tattggagtg gtgaatcctt cacagggaaa cttgcagacc 181 aggcttcaaa agcaaatctc atgtatgagg aaggcaagca catgcaacca gtttacaccg 241 cagcactcaa agacgagctc gtgaaaactg acaaaattta tggcaagatc aagaaaagac 301 tcctgtgggg ttctgacctc tccaccatga ttcgatgtgc caaagcattt ggtggtctca 361 tggatgagct caaagcaaat tgtattacac tccctatcag agttggtatg aatatgaatg 421 aagacggtcc cataatattt gagaaacact ccaggtacag gtaccactat gatgctgatt 481 actcccgctg ggactccaca caacagcggg cagtgctgga agcggcactt gaaatcatgg 541 tgagattttc tgctgagcca cagctggcac aaatagtggc agaggacctg ctgtcaccaa 601 gtgtggttga tgtgggcgat ttcaaaatcg ctatcaatga aggcctacca tctggcgtgc 661 cttgcacctc acaatggaat tctattgccc actggttact caccctgtgt gctctttctg 721 aagtgacagg actaggtcct gacatcatac aagccaactc catgtactct ttctatggtg 781 atgatgagat tgtgagcaca gacataaaat tggacccaga gaaattgacc gcaaagctca 841 aagaatatgg ccttaaaccc actcggcccg acaaaactga ggggccgctg gtgattagtg 901 aagacctgaa tgggttgact ttcctccgcc gaacagtcac ccgtgatcca gcaggttggt 961 ttggaaagtt ggaccaaaac tccatcctca ggcagttgta ctggacaaga ggacccaacc 1021 atgaagaccc cagtgagacc atgataccac acgcacaaag acctgtgcag ctcatggcac 1081 tactaggaga atcctcccta catggaccct cattttacag caaggttagc aaactggtca 1141 tatctgaact taaagaggga ggaatggatt tttatgtgcc cagacaagag tcaatgttca 1201 gatggatgag gttctcagat ctaagcacat gggagggcga tcgcaatctg gctcccagtt 1261 ttgtgaatga agatggcgtc gaatgacgcc gctccatcta atgatggtgc tgctggtctc 1321 gtaccagagg gcaacaacga gacccttccc ctagaaccag ttgcgggcgc agctatagcc 1381 gcacccgtca ctggccaaaa caacataatt gacccctgga ttagaacaaa ttttgtgcaa 1441 gcaccaaatg gagagttcac agtgtcaccc agaaactccc ctggagaaat tttactaaac 1501 ctagagttgg gccctgattt gaacccttat ttggctcatt tatcaaggat gtacaatggg 1561 tatgctggtg gagtggaagt tcaggttctc ctggcaggga acgcgttcac tgccggaaag 1621 atcctcttcg ccgccgtccc gccaaatttc ccagtggaat tcttaagccc agcccagatt 1681 acaatgctcc cacatttaat agtagatgta aggactcttg aaccaattat gatcccactc 1741 cctgatgtta ggaatacatt cttccattat aacaaccagc ctaacagccg catgagatta 1801 gtggctatgc tctacacccc ccttagatct aatggctcag gtgatgatgt ctttactgtc 1861 tcttgcaggg ttttgactag gcctactcct gattttgagt tcacttattt agtgccacct 1921 tctgttgaat ctaagactaa gcctttttcc ttacctattt taaccctttc tgagctcaca 1981 aattcgaggt tcccagtccc catcgattcg cttttcaccg cccagaataa tgtgttgcag 2041 gtgcagtgtc aaaatggcag gtgcacactt gatggtgagt tacaaggcac aacccagttg 2101 ctcccatctg gcatctgtgc attcagagga cgggtgacag cagaaactga ccaccgtgac 2161 aagtggcaca tgcaactgca aaacctcaat ggcacaacat atgacccaac tgatgatgtg 2221 ccagccccgc tgggtacacc tgacttcaag ggcgtcgtgt ttggggtagc aagccaaaga 2281 aatgtgggta atgatgcgcc tggctcaacc agggcccatg aggcggtgat ttcaacctat 2341 agcccccaat ttgtccccaa attaggttct gtcaatttta gaagtaatga taatgatttc 2401 caattgcagc cgacaaaatt cacaccagtg ggcatcaatg acgatggtga ccacccgttc 2461 agacaatggg aactaccaga ctattcaggg ctgcttacct tgaatatgaa ccttgccccc 2521 ccggttgctc caaatttccc tggtgaacaa ttattattct tcagatcttt tgtgccatgc 2581 tcaggaggtt ataaccaagg cattgtagat tgtcttatac cccaagaatg gatccaacac 2641 ttctatcagg aatcagcgcc ctcccagtca gacgtggccc taatcaggta tgttaacccc 2701 gacacgggac gcacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct 2761 cactctggag actatcctct tgttgttccg gctaatggat actttagatt tgattcttgg 2821 gtaaatcagt tttattcact cgccccaatg ggaactggga atgggcgaag gagggctcag 2881 taatggctgg agctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct 2941 ccctggtgaa cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac 3001 aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgaaggcaa 3061 ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct 3121 tttcccccac tgatgcagca aggggagcca ttggtgcacc catgacaaag gtgcttgact 3181 ggtctggcac tcgatactgg gcacccaact ccacaaagac aactggttat tcgggacaat 3241 tcacctcttc acctgtgcgc atgcctagcc caaatgctcc acaatcaaaa cctgcaaagc 3301 ctaggtctct agctccttcc tcttcttcta gtagtgtcta tagtatgtct actcaatcaa 3361 ctcatttaac atctggctct tctagtaatg cttcttctgc ctctacaaaa ttgacaaact 3421 taagctctgg ctcctctcaa aacagaacag cagagtgggt gaaccaacag agaagtttta 3481 gcccttttat gagtggcgca ctcaatatct cacatgtcac gccaccctca agtagggctt 3541 ccagttttgg gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtttgcgt 3601 ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt 3661 agtgaaaaga aataattggc tataatgtga tttcttttaa aatttggcta atttgtatct 3721 tta //