Typing tool
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Typing tool
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Complete norovirus genomes
| KJ145323 | GII.3 | |
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| GII.P21 |
ORF1: 1..1723
ORF2: 1704..3350
ORF3: 3350..4114
LOCUS KJ145323 4169 bp RNA linear VRL 31-DEC-2014
DEFINITION Norovirus 13-BG-1/2013/GII.P21/GII.3 nonstructural protein gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION KJ145323
VERSION KJ145323.1
KEYWORDS .
SOURCE Norovirus 13-BG-1/2013/GII.P21/GII.3
ORGANISM Norovirus 13-BG-1/2013/GII.P21/GII.3
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4169)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.P21/GII.3 recombinant variant
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4169)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4169
/organism="Norovirus 13-BG-1/2013/GII.P21/GII.3"
/mol_type="genomic RNA"
/isolate="13-BG-1/2013/GII.P21/GII.3"
/isolation_source="stool specimen from a 6-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1508709"
/country="Taiwan"
/collection_date="Sep-2013"
CDS <1..1723
/note="ORF1"
/codon_start=2
/product="nonstructural protein"
/protein_id="AID51509.1"
/translation="GMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGNEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPYHMRKNDCWNGETFTGKLADQASKANLMFEEGK
NMTPVYTGALKDELVKTDKIYGTIKKRLLWGSDLSTMVRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHL
AQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
CDS 1704..3350
/note="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="AID51510.1"
/translation="MKMASNDAAPSNDGAAGLVPEINSEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGMLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 3350..4114
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AID51511.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVRRSTPNFKTNQAPKPAPSSGFSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSFNRTRDWVNQQNFNLEPHMPGFFRTAFVTPPFSTAFSSG
TVSTVPKNVLDSWTFAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gggcatgtta cttacagggt ctaacgctaa gagtatggac ctgggtacaa ctcctggcga
61 ttgtggttgt ccctacatct acaagagggg gaacgactac gtggtcattg gggttcacac
121 tgccgccgct cgtggaggaa acaccgtcat ctgtgcaact caaggaaacg agggtgaggc
181 catgttagaa ggtggtgaca ataagggaac ttactgtgga gcaccaatat tgggccctgg
241 aaatgccccc aaactcagca ccaagaccaa gttttggaga tcttccacca cccccctacc
301 acccggaacc tatgagccag cctatctggg tggcaaggac cctagagtga aaggtggccc
361 ctcactgcaa caggttatga gggaccaact aaaaccattc actgagccca gaggtaaacc
421 acccaaacca agtgtgctag aagccgccaa gaagactata atcaatgtgc ttgaacaaac
481 aatagaccca cctcagaaat ggacatacgc acaggcgtgt gcatcactag acaagaccac
541 ttccagcggc cacccttacc acatgcggaa gaacgattgc tggaatgggg agactttcac
601 aggaaaactg gcagatcaag catcaaaggc taatctaatg tttgaggaag ggaagaacat
661 gaccccagtg tacacagggg ctctgaaaga tgagctagtc aagactgata agatctatgg
721 aacaatcaag aagagactcc tttggggttc agacctatcg accatggtac ggtgtgcacg
781 agctttcggt gggctaatgg acgaactcaa ggcccattgc gtcacactac cagtcagggt
841 tggtatgaac atgaatgagg atggacccat aatctttgag aaacattcca gatacaaata
901 tcattatgat gcagactact cccgttggga ttcaacacaa caaagagcag tgttggctgc
961 agctctggaa ataatggtta aattctcacc agaaccccat ctggcccaag tggttgcaga
1021 agacctctta tcccccagtg tgatggatgt gggtgacttc aagatatcaa ttaacgaggg
1081 gttgccctct ggtgtcccct gcacctcaca atggaactcc attgcccact ggctcctcac
1141 actatgtgca ctgtctgagg ttacagacct gtctcctgac attatccagg caaattcact
1201 gttctccttt tatggcgatg atgaaatagt gagtacagat atcaaactgg acccagaaaa
1261 attaacaaca aaattgaagg aatacgggct aaagccaacc cgtcctgaca aaacagaagg
1321 acccttaatc atctctgaag atttggatgg cctgaccttc ttacggagaa cggtgacccg
1381 tgatccggcc gggtggtttg gcaaattaga ccaaagttca atactcaggc agatgtactg
1441 gaccagggga ccaaaccatg aggacccctt cgaaacaatg ataccacact cccaaagacc
1501 catacaactg atgtcattat tgggtgaagc tgcgttgcat ggcccatcat tctacagtaa
1561 aatcagcaaa ttggtcatct cagaattgaa agagggtgga atggattttt acgtgcccag
1621 acaagaacca atgttcaggt ggatgagatt ctcagatttg agcacgtggg agggcgatcg
1681 caatctggct cccagttttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctaatg
1741 atggtgccgc cggcctcgtc ccagagatca acagtgaggc aatggcgcta gagccagtgg
1801 cgggcgcagc gatagcagca cccctcactg gtcagcaaaa tataattgat ccctggatta
1861 tgaataattt tgtgcaagca cctggtggtg agttcacagt atcccctaga aattcccctg
1921 gtgaagtcct tctcaatttg gaattgggtc cagaaataaa tccctacttg gctcatcttg
1981 ctaggatgta taatggttat gcaggtggat ttgaagtgca ggtggtccta gctggaaatg
2041 cgtttacagc aggaaagata atctttgcag ctattccccc taattttcca attgataatc
2101 taagtgcagc acagatcaca atgtgtccac atgtgattgt ggatgttagg cagttggaac
2161 cagtcaacct cccgatgcct gacgttcgca ataacttttt ccattacaat caggggtctg
2221 attcgagatt gcgcctaatt gcaatgttgt atacacctct tagggcaaat aactctgggg
2281 atgatgtttt tactgtgtct tgcagagtgc taactagacc tagtcctgac ttctcattta
2341 atttccttgt gccacccact gtggagtcaa agacaaaacc cttttccctc cccattctga
2401 ctatctctga aatgtccaat tctaggttcc cagtaccaat tgattctctg cacaccagcc
2461 ctactgagaa cattgttgtt cagtgccaga atggacgcgt cacccttgat ggtgagttga
2521 tgggcaccac tcaactttta cctagtcaaa tctgtgcttt caggggcatg cttaccagat
2581 caacaagcag ggccagtgac caggccgaca cagcaacccc tagattgttt aattattatt
2641 ggcatataca attggataac ctaaatggaa ctccttatga ccctgcagaa gatataccag
2701 gccccctagg gacaccagat ttccggggca aagtctttgg cgtggctagc cagagaaatc
2761 ctgatgccac gactagggca catgaagcaa agatagacac aacatctggc cgcttcaccc
2821 caaaattagg ctcactagag atttccactg agtctggaga ttttgatcaa aaccaaccaa
2881 caagattcac cccagttggc attggggttg accatgaggc agattttcaa caatggactc
2941 ttcccgacta cgctggccag ttcacccaca acatgaactt agccccagct gttgctccca
3001 acttccctgg tgagcagctc cttttcttcc gctcacagtt gccatcttcc ggtgggcggt
3061 ccaacggtat tctagactgc ctggtccccc aagaatgggt acagcacttc tatcaagaat
3121 cagccccctc ccaaactcaa gtggccctgg ttaggtatgt caaccccgac actggtagag
3181 tgttatttga ggccaagctg cacaaactag gtttcatgac tatagccaag agtggtgact
3241 ctccaataac tgtcccccca aatggatact tcaggtttga atcttgggtg aacccctttt
3301 atacacttgc ccccatggga actgggaatg ggcgtagaag gattcaataa tggctggagc
3361 ttttatagca ggattggctg gtgacatgct cacaaatact gtaggatctt tagttaatgc
3421 aggggctaat gctattaatc aaacaattga ttttgaaaat aataaatatt tgcaaaatgc
3481 ctcttttaat catgataagg agatgttgaa tgcacaagtt gaggcaacaa agaggttaca
3541 ggctgacatg attgctatca aacaaggagt tttgaccgct ggcggcttct cccctactga
3601 tgcagcccgc ggggcaatta atgctcccat gacaaaagtc ctagattgga atggaacgag
3661 atactgggcg ccaggtgcca cctccacaac ctcgatgtca ggtggcttca caaatcaaac
3721 tgtgcgcaga tccacaccaa attttaaaac gaaccaggcc cccaaacccg cacccagcag
3781 tgggttttca gtgaggtcaa attcaaccca aatcactagc ctgagctcac actcgtccgg
3841 gtcgtctcga tccagcgggt ctacagttgt cagctcaata ccgtccttta acaggactag
3901 ggactgggtt aaccaacaaa attttaattt ggaaccacac atgcctggat tttttaggac
3961 agcctttgtc actccaccat ttagtacagc ctttagctca ggcacagttt caactgtgcc
4021 caaaaatgtt ttggactcct ggacatttgc gtttaacacg cgcagacagc cgctattcgc
4081 acaccttcgc agaagggggg agtcaaatgt ttagtgaaaa gattatttta aattttggtt
4141 taaaattgaa tttaatttgg aatttttta
//