Typing tool
|
Complete norovirus genomes
KJ131172 | GII.5 | ||
---|---|---|---|
GII.P40 |
ORF1: 1..1695 ORF2: 1682..3298 ORF3: 3298..4005LOCUS KJ131172 4005 bp RNA linear VRL 31-DEC-2014 DEFINITION Norovirus 12-K-2/2012/GII.P22/GII.5 nonstructural protein gene, partial cds; capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION KJ131172 VERSION KJ131172.1 KEYWORDS . SOURCE Norovirus 12-K-2/2012/GII.P22/GII.5 ORGANISM Norovirus 12-K-2/2012/GII.P22/GII.5 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4005) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Emergence of Novel Recombinant Norovirus Variant GII.22/GII.5 in Taiwan, 2012 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4005) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (12-JAN-2014) Centers for Disease Control Department of Health, Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4005 /organism="Norovirus 12-K-2/2012/GII.P22/GII.5" /mol_type="genomic RNA" /isolate="12-K-2/2012/GII.P22/GII.5" /isolation_source="stool specimen from a 26-year man with diarrhea" /host="Homo sapiens" /db_xref="taxon:1508703" /country="Taiwan" /collection_date="Feb-2012" CDS <1..1695 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AID51485.1" /translation="KNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICAT QGPDGEATLEGRDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGG KDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSY AQACASLDKTTSSGHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAA LKDELVKTSKIYEKIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMN EDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLL APSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCF SFYGDDEIVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLMIKENLDGLTFLRRDVC RDPAGWYGKLDQSSIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPVF YKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE" CDS 1682..3298 /note="VP1" /codon_start=1 /product="capsid protein" /protein_id="AID51486.1" /translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPDVR STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ" CDS 3298..>4005 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AID51487.1" /translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS TVVSTSSVSPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA SSNGTVSTVPKGVLDSWT" ORIGIN 1 aagaacatgg acctcggtac cattcctgga gactgtggtt gtccctatgt ttacaagaga 61 ggtaatgact gggtggttat aggggtgcac accgcagccg ccagaggtgg caacactgtg 121 atttgtgcca ctcagggtcc agacggtgag gccacgcttg aggggagaga caaccacggg 181 acttactgtg gggcaccaat acttggacca ggaagtgcac caaaactcag cactaagact 241 aaattctgga ggtcatccaa cgccccactc ccgcctggca cttatgagcc cgcttaccta 301 ggcggaaaag acccaagagt caagggggga ccatcactac agcaagtcat gagggaacaa 361 ctcaaacctt tcacagcccc ccgagggaag cccccacgac cggcgatcct ggaggctgct 421 aaggaaacca tctgtaatgt acttgagcag atcattgacc caccccaaaa atggtcttat 481 gctcaggcct gtgcctctct ggacaaaaca acatccagtg gccatcccca ccatatgaaa 541 aagaatgaca actggaacgg agagtccttc accggtgtgt tggctgacca agcttccaag 601 gcaaatctca tgtttgaaca agggaaacac atgcaacctg tgtacactgc cgccctcaaa 661 gacgagctcg tcaagactag caagatctat gagaaaatta agaagaggct cctatggggt 721 tcagatctgg gcacaatgat ccgctgtgct agggcttttg gaggcctcat ggatgagatg 781 aaagcaaatt gtgtaaactt accaatcaga gttggcatga acatgaatga agatggaccc 841 atcattttcg agaaacattc aaagtataag taccattatg atgctgacta ctctaggtgg 901 gattcaaccc aacagagaca tatcttgggg gctgcccttg agataatggt taggttctca 961 gctgaacctg aattggccca aattgtatct gaagatctcc tagcccccag cgtggtggac 1021 gttggtgact tcaagatcac cataaatgaa ggtttaccct ctggagtgcc gtgcacatca 1081 caatggaact caatttccca ctggctaata acactatgtg ccatatcaga aatttcaggg 1141 ctgtcgccag atgtggtaca aacaaactcc tgtttctcct tctatgggga tgatgagata 1201 gtcagcactg acattaagtt agatcccatg aaattaacta acaagttgaa ggagtatgga 1261 ctgatcccaa caagaccaga caagacagag gggccactca tgatcaaaga gaaccttgat 1321 ggcttgacct ttctgaggag ggatgtgtgt cgggacccag ctggttggta tggaaaactt 1381 gatcaatcct caattatgag acaattgttt tggaccaagg ggcccaacca tgacgatccc 1441 aatgagacaa tgattccaca ctcccagagg cccatacaac taatgtcatt gctgggggag 1501 gcagcattac acggaccagt tttctacaag aaagtcagta aattagttat cactgagctc 1561 aaagagggtg gaatggattt ttacgtgcca aggcaagaac ctatgtttag gtggatgaga 1621 ttctctgacc tcagcacttg ggagggcgat cgcaatcttg ctcccgaagg tgtgaatgaa 1681 gatggcgtcg aatgacgcta ctccatcaaa tgatggtgct gccggcctcg tgccagaaag 1741 taacaatgag gcaatggctc tggaacccgt ggtgggggcg tctttagccg cccctgtcac 1801 tggccaaact aatataatag acccctggat tagaactaat tttgtccaag cccctaatgg 1861 tgaattcaca gtttccccta gaaattcccc tggagagata ttggtcaatt tggagttagg 1921 tccagaactg aacccttatc tggcacattt agctaggatg tacaatggtt atgcgggtgg 1981 tatggaggtg caagtgatgc tcgcggggaa cgcgttcact gctggcaaga tcatctttgc 2041 cgccgtgcca ccttactttc cagtggaaaa tcttagccct tcccaaataa caatgttccc 2101 acatgtgatt atcgatgtta gaaccttaga acctgtactg ctcccaatgc ctgatgtcag 2161 aagcaccctt ttccacttta atcaaaagga tgaacctaag atgagacttg ttgccatgct 2221 ctacacccct cttcgttcta atggctctgg tgatgacgtt ttcactgtct catgtaggat 2281 tctcactagg ccctctcctg aatttgattt cacatacttg gtgccaccaa cagtggagtc 2341 aaagaccaag ccattcacac tacctgtgct gacattggga gaattgtcca attctagatt 2401 ccctctctct attgatgaaa tggtcaccag ccctaatgag tccatagttg ttcagccaca 2461 gaatggtagg gtcacactag atggggagtt gttaggcaca acccaactgc aagcatgtaa 2521 catttgttcc ataaggggga aagtgacagg acaggtccct aatgaacaac acatgtggaa 2581 cctggagatt acaaacctaa atgggacgca atttgaccct acagatgatg tcccagcccc 2641 tcttggtgtg cccgactttg caggtgaggt ctttggtgta ctcagccaga gaaatagagg 2701 tgaaagcaat ccagcaaaca gggctcatga tgctgttgtg gctacctaca gtgataaata 2761 cacccctaaa ttgggcttag tgcaaattgg gacttggaac accaacgatg ttgaaaacca 2821 gccaacaaaa ttcaccccaa ttggtttgaa tgaggtcgcc aatggccatc gatttgaaca 2881 gtggaccttg cctaggtatt ctggtgccct gacattaaat atgaatttag ctcctgctgt 2941 ggccccgctc tttcctggag agcgtctcct tttcttccgc tcttacgtcc cattaaaagg 3001 tggatttgga aaccctgcta tagattgtct agtgcctcag gagtgggtcc aacatttcta 3061 tcaggaatct gccccatctc tgggggatgt ggccttagtc aggtacgtca acccagacac 3121 cgggcgcgtc ctttttgagg ccaaactcca caaaggtggg ttcctgaccg tgtcaagcac 3181 tagcacaggg cctgttgtgg tcccagccaa tggttatttc agatttgatt cttgggttaa 3241 tcaattttac tctcttgccc ccatgggaac tgggaatggg cgcagaaggt ttcagtaatg 3301 gcaggggctt tcatagcagg tttagcaggt gatgtgctta gtaatggcct cggttcgctg 3361 attaatgccg gagccaatgc tatcaatcaa agagcagaat ttgatttcaa taggcaattg 3421 cagcaaaatt cttttaatca tgataaggag atgttaaatg cccaaattca agcaacaaaa 3481 cagttgcagg ctgatatgat agcaatcaaa cagggagtcc tagctgctgg gggtttctca 3541 ccaactgatg cagccagagg agctgtcaat gcacccatga cccaagcatt agattggagt 3601 ggcactaggt attgggcccc tggttcaatg aagaccacca gctattctgg aaagtttgtg 3661 tccatgaatc ctgttaggca ggttgagttc ccgcagccca aaaagagtgc ggccatacca 3721 tcaagtgcca gctctgtgtc ttctggtagg actaatttca caaattctac tcaatcaact 3781 gttgttagca cttcctcagt atcaccttct aggggttctt ctgctccttc tactctatca 3841 agggctacaa ccagaacttc caattgggtt gaggaacaaa acaggaattt ggaaccctac 3901 atgaggggtg ccctccaaac aacatttgtc accccccctt ccagccgggc atctagcaac 3961 ggtacagtct caactgtacc aaaaggtgtt ttggactcct ggaca //