Typing tool
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Typing tool
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Complete norovirus genomes
| KJ131169 | GII.5 | |
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| GII.P40 |
ORF1: 1..1695
ORF2: 1682..3298
ORF3: 3298..4005
LOCUS KJ131169 4005 bp RNA linear VRL 31-DEC-2014
DEFINITION Norovirus 12-C-1/2012/GII.P22/GII.5 nonstructural protein gene,
partial cds; capsid protein gene, complete cds; and minor
structural protein gene, partial cds.
ACCESSION KJ131169
VERSION KJ131169.1
KEYWORDS .
SOURCE Norovirus 12-C-1/2012/GII.P22/GII.5
ORGANISM Norovirus 12-C-1/2012/GII.P22/GII.5
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4005)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Emergence of Novel Recombinant Norovirus Variant GII.22/GII.5 in
Taiwan, 2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4005)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4005
/organism="Norovirus 12-C-1/2012/GII.P22/GII.5"
/mol_type="genomic RNA"
/isolate="12-C-1/2012/GII.P22/GII.5"
/isolation_source="stool specimen from a 50-year man with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1508698"
/country="Taiwan"
/collection_date="Jan-2012"
CDS <1..1695
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AID51476.1"
/translation="KNMDLGTIPGYCGCPYVYKRGNDWVVIGVHTAAARGGNTVICAT
QGPDGEATLEGRDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGG
KDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSY
AQACASLDKTTSSGHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAA
LKDELVKTSKIYEKIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMN
EDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLL
APSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCF
SFYGDDEIVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLDGLTFLRRDVC
RDPAGWYGKLDQSSIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPVF
YKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1682..3298
/note="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="AID51477.1"
/translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME
VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPDVR
STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV
ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL
QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL
SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV
ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL
VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 3298..>4005
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AID51478.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVSTSSVSPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWT"
ORIGIN
1 aagaacatgg acctcggtac cattcctgga tactgtggtt gtccctatgt ttacaagaga
61 ggtaatgact gggtggttat aggggtgcac accgcagccg ccagaggtgg caacactgtg
121 atttgtgcca ctcagggtcc agacggtgag gccacgcttg aggggagaga caaccacggg
181 acttactgtg gggcaccaat acttggacca ggaagtgcac caaaactcag cactaagact
241 aaattctgga ggtcatccaa cgccccactc ccgcctggca cttatgagcc cgcttaccta
301 ggcggaaaag acccaagagt caagggggga ccatcactac agcaagtcat gagggaacaa
361 ctcaaacctt tcacagcccc ccgagggaag cccccacgac cggcgatcct ggaggctgct
421 aaggaaacca tctgtaatgt acttgagcag atcattgacc caccccaaaa atggtcttat
481 gctcaggcct gtgcctctct ggacaaaaca acatccagtg gccatcccca ccatatgaaa
541 aagaatgaca actggaacgg agagtccttc accggtgtgt tggctgacca agcttccaag
601 gcaaatctca tgtttgaaca agggaaacac atgcaacctg tgtacactgc cgccctcaaa
661 gacgagctcg tcaagactag caagatctat gagaaaatta agaagaggct cctatggggt
721 tcagatctgg gcacaatgat ccgctgtgct agggcttttg gaggcctcat ggatgagatg
781 aaagcaaatt gtgtaaactt accaatcaga gttggcatga acatgaatga agatggaccc
841 atcattttcg agaaacattc aaagtataag taccattatg atgctgacta ctctaggtgg
901 gattcaaccc aacagagaca tatcttgggg gctgcccttg agataatggt taggttctca
961 gctgaacctg aattggccca aattgtatct gaagatctcc tagcccccag cgtggtggac
1021 gttggtgact tcaagatcac cataaatgaa ggtttaccct ctggagtgcc gtgcacatca
1081 caatggaact caatttccca ctggctaata acactatgtg ccatatcaga aatttcaggg
1141 ctgtcgccag atgtggtaca aacaaactcc tgtttctcct tctatgggga tgatgagata
1201 gtcagcactg acattaagtt agatcccatg aaattaacta acaagttgaa ggagtatgga
1261 ctgatcccaa caagaccaga caagacagag gggccactca taatcaaaga gaaccttgat
1321 ggcttgacct ttctgaggag ggatgtgtgt cgggacccag ctggttggta tggaaaactt
1381 gatcaatcct caattatgag acaattgttt tggaccaagg ggcccaacca tgacgatccc
1441 aatgagacaa tgattccaca ctcccagagg cccatacaac taatgtcatt gctgggggag
1501 gcagcattac acggaccagt tttctacaag aaagtcagta aattagttat cactgagctc
1561 aaagagggtg gaatggattt ttacgtgcca aggcaagaac ctatgtttag gtggatgaga
1621 ttctctgacc tcagcacttg ggagggcgat cgcaatcttg ctcccgaagg tgtgaatgaa
1681 gatggcgtcg aatgacgcta ctccatcaaa tgatggtgct gccggcctcg tgccagaaag
1741 taacaatgag gcaatggctc tggaacccgt ggtgggggcg tctttagccg cccctgtcac
1801 tggccaaact aatataatag acccctggat tagaactaat tttgtccaag cccctaatgg
1861 tgaattcaca gtttccccta gaaattcccc tggagagata ttggtcaatt tggagttagg
1921 tccagaactg aacccttatc tggcacattt agctaggatg tacaatggtt atgcgggtgg
1981 tatggaggtg caagtgatgc tcgcggggaa cgcgttcact gctggcaaga tcatctttgc
2041 cgccgtgcca ccttactttc cagtggaaaa tcttagccct tcccaaataa caatgttccc
2101 acatgtgatt atcgatgtta gaaccttaga acctgtactg ctcccaatgc ctgatgtcag
2161 aagcaccctt ttccacttta atcaaaagga tgaacctaag atgagacttg ttgccatgct
2221 ctacacccct cttcgttcta atggctctgg tgatgacgtt ttcactgtct catgtaggat
2281 tctcactagg ccctctcctg aatttgattt cacatacttg gtgccaccaa cagtggagtc
2341 aaagaccaag ccattcacac tacctgtgct gacattggga gaattgtcca attctagatt
2401 ccctctctct attgatgaaa tggtcaccag ccctaatgag tccatagttg ttcagccaca
2461 gaatggtagg gtcacactag atggggagtt gttaggcaca acccaactgc aagcatgtaa
2521 catttgttcc ataaggggga aagtgacagg acaggtccct aatgaacaac acatgtggaa
2581 cctggagatt acaaacctaa atgggacgca atttgaccct acagatgatg tcccagcccc
2641 tcttggtgtg cccgactttg caggtgaggt ctttggtgta ctcagccaga gaaatagagg
2701 tgaaagcaat ccagcaaaca gggctcatga tgctgttgtg gctacctaca gtgataaata
2761 cacccctaaa ttgggcttag tgcaaattgg gacttggaac accaacgatg ttgaaaacca
2821 gccaacaaaa ttcaccccaa ttggtttgaa tgaggtcgcc aatggccatc gatttgaaca
2881 gtggaccttg cctaggtatt ctggtgccct gacactaaat atgaatttag ctcctgctgt
2941 ggccccgctc tttcctggag agcgtctcct tttcttccgc tcttacgtcc cattaaaagg
3001 tggatttgga aaccctgcta tagattgtct agtgcctcag gagtgggtcc aacatttcta
3061 tcaggaatct gccccatctc tgggggatgt ggccttagtc aggtacgtca acccagacac
3121 cgggcgcgtc ctttttgagg ccaaactcca caaaggtggg ttcctgaccg tgtcaagcac
3181 tagcacaggg cctgttgtgg tcccagccaa tggttatttc agatttgatt cttgggttaa
3241 tcaattttac tctcttgccc ccatgggaac tgggaatggg cgcagaaggt ttcagtaatg
3301 gcaggagctt tcatagcagg tttagcaggt gatgtgctta gtaatggcct cggttcgctg
3361 attaatgccg gagccaatgc tatcaatcaa agagcagaat ttgatttcaa taggcaattg
3421 cagcaaaatt cttttaatca tgataaggag atgttaaatg cccaaattca agcaacaaaa
3481 cagttgcagg ctgatatgat agcaatcaaa cagggagtcc tagctgctgg gggtttctca
3541 ccaactgatg cagccagagg agctgtcaat gcacccatga cccaagcatt agattggagt
3601 ggcactaggt attgggcccc tggttcaatg aagaccacca gctattctgg aaagtttgtg
3661 tccatgaatc ctgttaggca ggttgagttc ccgcagccca aaaagagtgc ggccatacca
3721 tcaagtgcca gctctgtgtc ttctggtagg actaatttca caaattctac tcaatcaact
3781 gttgttagca cttcctcagt atcaccttct aggggttctt ctgctccttc tactctatca
3841 agggctacaa ccagaacttc caattgggtt gaggaacaaa acaggaattt ggaaccctac
3901 atgaggggtg ccctccaaac aacatttgtc accccccctt ccagccgggc atctagcaac
3961 ggtacagtct caactgtacc aaaaggtgtt ttggactcct ggaca
//