Typing tool
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Complete norovirus genomes
KF944179 | GII.3 | ||
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GII.P21 |
ORF1: 1..825 ORF2: 806..2452 ORF3: 2452..3193LOCUS KF944179 3193 bp RNA linear VRL 01-AUG-2019 DEFINITION Norovirus GII strain Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N2911/2011 RNA-dependent RNA polymerase (POL) gene, partial cds; major capsid protein VP1 (VP1) gene, complete cds; and minor capsid protein VP2 (VP2) gene, partial cds. ACCESSION KF944179 VERSION KF944179.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3193) AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V., Netesov,S.V. and Tikunova,N.V. TITLE Molecular epidemiology of noroviruses associated with sporadic gastroenteritis in children in Novosibirsk, Russia, 2003-2012 JOURNAL J. Med. Virol. 87 (5), 740-753 (2015) PUBMED 25693507 REFERENCE 2 (bases 1 to 3193) AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S., Sedelnikova,D. and Tikunova,N. TITLE Changing pattern of prevalence and genetic diversity of rotavirus, norovirus, astrovirus, and bocavirus associated with childhood diarrhea in Asian Russia, 2009-2012 JOURNAL Infect. Genet. Evol. 67, 167-182 (2019) PUBMED 30414977 REFERENCE 3 (bases 1 to 3193) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (07-DEC-2013) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REFERENCE 4 (bases 1 to 3193) AUTHORS Zhirakovskaya,E. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REMARK Sequence update by submitter COMMENT On Feb 2, 2018 this sequence version replaced KF944179.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3193 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N2911/2011" /isolate="Hu/GII.3/Novosibirsk/Nsk-N2911/2011/RUS" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 8 months" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="02-Oct-2011" /note="genotype: GII.P21/GII.3" gene <1..825 /gene="POL" CDS <1..825 /gene="POL" /note="ORF1; RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AWH61273.1" /translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 806..2452 /gene="VP1" CDS 806..2452 /gene="VP1" /note="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AUX14995.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTAIPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNSDATTRAHAAKIDTTSGRFTPKLGSLEISTESDDFDQNQP TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTVA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ" gene 2452..>3193 /gene="VP2" CDS 2452..>3193 /gene="VP2" /note="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AUX14996.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPGATSTTSMSGGFTNQTVHRSTPNLKTNQVPKSTPSSGSSVRSNSTQITSLSS HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLR" ORIGIN 1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtgctggct 61 gcagccctgg aaataatggt caaattctca ccagaacccc atctggccca agtagttgca 121 gaagacctct tgtcccccag tgtgatggac gtgggtgatt tcaagatatc aatcaacgag 181 ggattaccct ctggtgttcc ttgcacctca caatggaact ccattgccca ctggctcctc 241 acactatgtg cactgtctga agtcacagac ctgtctcctg atatcatcca ggcgaattcc 301 ctgttctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccggag 361 aaattgacaa caaaattgaa ggaatacggg ctcaaaccaa cccgtcctga taaaacagaa 421 ggacccttaa tcatctctga agatttggat ggcctgacct tcttgcggag aacagtgacc 481 cgtgatccgg ccggatggtt tggcaaactg gaccaaagtt caatactcag gcagatgtac 541 tggaccaagg gaccaaacca tgaggacccc tttgaaacaa tgataccaca ctcccaaagg 601 cccatacaac tgatgtcatt actgggtgaa gctgcattgc atggtccatc attctacagt 661 aaaatcagca aattggtcat ctcagaattg aaagagggtg gaatggattt ttacgtgccc 721 agacaggaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat 781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa 841 tgatggtgcc gccggcctcg tcccagagat caataatgag gcaatggcgc tagagccagt 901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat 961 tatgaataat tttgtgcaag cacctggtgg tgagttcaca gtgtccccca gaaattcccc 1021 tggtgaagtt cttcttaatt tggaactggg cccagaaata aatccctatt tggcccatct 1081 tgctagaatg tataatggtt atgcaggtgg atttgaggtg caggtggtcc tagctggaaa 1141 tgcgtttaca gcaggaaaga taatctttgc agctattccc cccaattttc caattgacaa 1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga 1261 accagtcaac ctcccgatgc ctgacgttcg caacaacttc tttcattaca atcaagggtc 1321 tgattcgaga ttgcgcctaa ttgcaatgtt gtacacacct cttagggcta ataattctgg 1381 ggatgatgtt ttcactgtgt cttgcagagt gctaactaga cctagtcctg acttctcatt 1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctatttt 1501 gactatctct gaaatgtcca actctaggtt tccagtacca attgattctc tgcacaccag 1561 tcctactgag aatattgttg ttcagtgcca gaatgggcgc gtcacccttg atggtgagtt 1621 gatgggcacc acccaactct tacctagtca aatctgtgct ttcaggggcg ttttgaccag 1681 atcaacaagc agggccagtg atcaggccga tacagcaatt cctagattgt ttaattatta 1741 ttggcatata caattggata atctaaatgg aacaccttat gatcctgcag aagacatacc 1801 aggcccccta gggacaccag atttccgggg caaagtcttt ggcgtggcca gccagagaaa 1861 ttctgatgcc acgaccaggg cacatgcagc aaagatagac acaacatctg gccgcttcac 1921 cccaaagcta ggctcattag agatatccac tgaatctgat gattttgatc aaaaccaacc 1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggac 2041 tctacccgac tacgctggcc agttcacaca caacatgaac ttagccccag ctgttgctcc 2101 taacttccct ggtgagcagc tccttttctt ccgctcacag ttgccatctt ctggtgggcg 2161 atccaacggg attctagact gccttgtccc ccaagaatgg gtacagcact tctaccagga 2221 atcagccccc tctcagtctc aagtggccct ggttaggtat atcaaccctg acactggtag 2281 agtgttattt gaggccaagc tgcataaatt aggtttcatg actgtagcca agaatggtga 2341 ttctccaata actgtccctc caaatggata ttttaggttt gaatcttggg tgaacccctt 2401 ttacacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga 2461 gctttcatag caggattggc tggtgacatg cttacaaata ctgtaggatc tttagttaat 2521 gcaggggcta atgctattaa ccaaacaatt gattttgaaa ataataaata tttgcaaaat 2581 gcttctttca atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta 2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccccact 2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg 2761 agatactggg caccaggtgc cacctccaca acctcgatgt cgggtggctt tacaaatcaa 2821 actgtgcaca gatccacacc aaatcttaag acgaaccagg tccccaaatc cacacccagc 2881 agtgggtctt cagtgaggtc aaattcaact caaatcacta gcctgagctc acactcgtcc 2941 gggtcgtctc gatccagcgg gtctacagtt gtcagctcaa taccatcctc taacaggact 3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg gtctcttagg 3061 acagcttttg tcactccacc atctagtaca gcctctagct caggcacagt ctcaaccgtg 3121 cccaaaaatg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctattc 3181 gcacaccttc gca //