Typing tool
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Typing tool
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Complete norovirus genomes
| KF944166 | GII.3 | |
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| GII.P12 |
ORF1: 1..800
ORF2: 781..2427
ORF3: 2427..3191
LOCUS KF944166 3276 bp RNA linear VRL 01-AUG-2019
DEFINITION Norovirus GII strain
Hu/GII.P12-GII.3/RUS/Novosibirsk/Nsk11-N2675/2011 nonstructural
polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene,
partial cds; and major capsid protein VP1 (ORF2) and minor capsid
protein VP2 (ORF3) genes, complete cds.
ACCESSION KF944166
VERSION KF944166.4
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3276)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3276)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 3276)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 4 (bases 1 to 3276)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
REFERENCE 5 (bases 1 to 3276)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Dec 14, 2018 this sequence version replaced KF944166.3.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3276
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P12-GII.3/RUS/Novosibirsk/Nsk11-
N2675/2011"
/isolate="Hu/GII.3/Novosibirsk/Nsk-N2675/2011/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 2 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="13-Aug-2011"
/note="genotype: GII.P12/GII.3"
gene <1..800
/gene="ORF1"
CDS <1..800
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AIS24612.2"
/translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD
FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV
STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK
LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI
AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..797
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 781..2427
/gene="ORF2"
CDS 781..2427
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX14991.2"
/translation="MKMASNDAAPSNDGAAGLVPEINSEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2427..3191
/gene="ORF3"
CDS 2427..3191
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX14992.2"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRPTPNFKTNQVPKPTPNSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 3192..3244
ORIGIN
1 ggtgggactc aacacaacaa agagccgtgt tggcagcagc cttagaaatc atggtcaagt
61 tctccccaga gccgcacctg gcccaaaagg ttgcagaaga ccttctttct cccagcgtga
121 tggacgtggg tgatttcaag atatcaatca atgagggtct cccctccggg gtgccctgca
181 cctcccaatg gaattccatc gcccactggc tcctcactct ctgtgcactc tctgaggtta
241 caaacctgtc ccctgacatc attcaggcca actctctctt ttctttctac ggtgatgatg
301 aaattgtgag tacagatata aaattggacc cagagaaact gacggcaaaa ctcaaggaat
361 acgggttgaa accaacccgc cctgacaaga ctgaaggacc acttgtcatc tctgaagacc
421 tgaatggcct aactttcctg cggaggaccg tgacccgcga cccagcgggc tggtttggaa
481 agttggaaca gagttcaata ctcagacaaa tgtattggac taggggcccc aaccatgaag
541 acccatctga aacaatgata ccacactccc agaggcccat acaattgatg tctttgctgg
601 gtgaggctgc actccacggc ccagcattct acagcaaaat tagtaaactg gtcattgcag
661 agttgaagga aggtggcatg gatttttacg tgccaagaca agaaccaatg ttcagatgga
721 tgagattctc ggatctaagc acgtgggagg gcgatcgcaa tctggctccc agttttgtga
781 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgccgg cctcgtccca
841 gagatcaaca gtgaggcaat ggcgctagag ccagtggcgg gtgcagcgat agcagcaccc
901 ctcactggtc agcagaatat aattgatccc tggattatga ataattttgt gcaagcacct
961 ggtggtgagt ttacagtatc tcctagaaat tcccctggtg aagttcttct caatttggaa
1021 ttgggtccag aaataaatcc ctatttggcc catcttgcca gaatgtataa tggttatgca
1081 ggtggatttg aagtgcaggt ggtcctagct ggaaatgcgt ttacagcagg aaagataatc
1141 tttgcagcta ttccccctaa ttttccaatt gataatctaa gtgcagcaca gatcacaatg
1201 tgtccacatg tgattgtgga tgtcagacag ctggaaccag tcaacctccc gatgcctgac
1261 gttcgcaaca acttcttcca ttacaatcaa gggtctgatt cgagattgcg cctaattgca
1321 atgctatata cacctcttag ggcaaataat tctggggatg atgtttttac tgtgtcttgc
1381 agagtgctaa ctagacctag ccctgacttc tcatttaatt tccttgtgcc acccactgtg
1441 gagtcaaaga caaaaccctt ttccctccct attctgacta tctccgaaat gtccaattct
1501 aggttcccag taccgattga ttctctgcac accagcccta ctgaaaacat tgttgtccag
1561 tgtcagaatg gacgagtcac ccttgatggt gagttgatgg gcaccaccca actcttgcct
1621 agccaaatct gtgctttcag gggcacgctt accagatcaa caagcagggc cagtgaccag
1681 gccgatacag caacccctag attgtttaat tattattggc atatacaatt ggataaccta
1741 aatggaactc cttatgaccc tgcagaagat ataccaggcc ccctagggac accagatttc
1801 cggggcaaag tctttggcgt ggccagccag agaaatcctg acgccacgac tagggcacat
1861 gaagcaaaga tagacacaac atctggccgc ttcaccccaa aattaggttc actagagatt
1921 tccactgagt ctggagattt tgatcaaaac caaccaacaa gattcacccc agttggcatt
1981 ggggttgacc atgagtcaga ctttcaacaa tgggcccttc ccgactatgc aggccagttc
2041 acccacaaca tgaacttagc cccagctgtt gctcccaact tccctggtga gcagctcctt
2101 ttcttccgct cacagttgcc atcttctggt gggcggtcca acgggattct agactgcctg
2161 gtcccccaag aatgggtgca gcatttctac caagaatcag ccccctccca aactcaagtg
2221 gccctagtta ggtatgtcaa ccctgacact ggtagagtgt tatttgaggc caagctgcac
2281 aaattaggtt tcatgactat agccaagagt ggtgactccc caataactgt ccccccaaat
2341 ggatacttta ggtttgaatc ttgggtgaac cccttttata cacttgcccc catgggaact
2401 gggaatgggc gtagaaggat tcaataatgg ctggagcttt tatagcagga ttggctggtg
2461 atatgctcac aaatactgta ggatctttag ttaatgcagg ggctaatgcc attaatcaaa
2521 caattgattt tgaaaataat aaatatttgc aaaatgcctc ttttaatcat gataaggaga
2581 tgttgaatgc acaaattgag gcaacaaaga ggttacaggc tgacatgatt gctatcaaac
2641 aaggggtttt gaccgctggc ggcttctccc ctactgatgc agcccgcggg gcaattaatg
2701 cccccatgac aaaagttcta gattggaatg gaacgagata ctgggcacca ggtgccacct
2761 ccacaacctc gatgtcgggt ggcttcacga atcaaactgt gcacagaccc acaccaaatt
2821 ttaaaacgaa ccaggtcccc aaacccacac ccaacagtgg gtcttcagtg aggtcaaatt
2881 caacccaaat taccagcctg agctcacact cgtccgggtc gtctcgatcc agcgggtcta
2941 cagtcgtcag ctcaatacca tcctctaaca ggactaggga ctgggtcaac caacaaaatt
3001 ttaatttgga accacacatg cctggatctc ttaggacagc ttttgtcact ccaccatcta
3061 gtacagcctc tagctcaggc acagtctcaa ctgtgcccaa aaatgttttg gactcctgga
3121 catctgcgtt taatacgcgc agacagccgc tattcgcaca ccttcgcaga aggggggagt
3181 caaatgttta gtgaaaagat tattttaaat ttggtttaaa attagattta atttggaatc
3241 ttttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//