Typing tool
|
Complete norovirus genomes
KF944111 | GII.3 | ||
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GII.P16 |
ORF1: 4..5100 ORF2: 5081..6727 ORF3: 6727..7491LOCUS KF944111 7554 bp RNA linear VRL 01-AUG-2019 DEFINITION Norovirus GII isolate Hu/GII.P16-GII.3/Novosibirsk/Nsk-N1648/2011/RUS, complete genome. ACCESSION KF944111 VERSION KF944111.3 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7554) AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V., Netesov,S.V. and Tikunova,N.V. TITLE Molecular epidemiology of noroviruses associated with sporadic gastroenteritis in children in Novosibirsk, Russia, 2003-2012 JOURNAL J. Med. Virol. 87 (5), 740-753 (2015) PUBMED 25693507 REFERENCE 2 (bases 1 to 7554) AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S., Sedelnikova,D. and Tikunova,N. TITLE Changing pattern of prevalence and genetic diversity of rotavirus, norovirus, astrovirus, and bocavirus associated with childhood diarrhea in Asian Russia, 2009-2012 JOURNAL Infect. Genet. Evol. 67, 167-182 (2019) PUBMED 30414977 REFERENCE 3 (bases 1 to 7554) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (07-DEC-2013) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REFERENCE 4 (bases 1 to 7554) AUTHORS Zhirakovskaya,E., Tikunov,A. and Shlyakhtun,V. TITLE Direct Submission JOURNAL Submitted (16-SEP-2015) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REMARK Sequence update by submitter COMMENT On Sep 17, 2015 this sequence version replaced KF944111.2. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7554 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/GII.P16-GII.3/Novosibirsk/Nsk-N1648/2011/RUS" /isolation_source="fecal sample" /host="Homo sapiens; sex: M; age: 4 months" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="07-Feb-2011" /note="genotype: GII.P16-GII.3" gene 4..5100 /gene="POL" CDS 4..5100 /gene="POL" /note="ORF1; encodes p48, NTPase, p22, VPg, 3CLpro, RdRp" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ALE30633.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDNSQKPPRPPTPELVKRIPPPPSNGEEEEPVIRYEVKSGVSGLPELTTVPQP DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAV SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE KAKRDFPGQPDMWKDAFKSDFSHIRLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEA PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP GGAPKLSTKTKFWRSSNMPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWN GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" gene 5081..6727 /gene="VP1" CDS 5081..6727 /gene="VP1" /note="major capsid protein; ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="AIS24557.2" /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESGDFDQNQP TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ" gene 6727..7491 /gene="VP2" CDS 6727..7491 /gene="VP2" /note="minor capsid protein; ORF2" /codon_start=1 /product="capsid protein VP2" /protein_id="ALE30634.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPITKVLDWSG TRYWAPNATSTTSMSGGFTGQAVHRATPNFKTNQAPKSTPSSGSSVRSSSTQLTNLSS HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD TVSTVPKSVLDSWTPAFNTRRQPLFAHLRRRGESNI" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac 61 aaggaaaaat cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc 121 ctcggggccc ggcccaaaca gcctgccccg agggacaact cacaaaagcc cccaagacca 181 ccaactcccg agttggttaa gaggataccc cctcccccat ctaatggtga agaagaagaa 241 ccagtcatta ggtatgaggt taagagtggg gtctctggcc tgcccgagct cacaacagtc 301 ccccaaccgg atgtggccaa cacggcattc agtgtcccac cgctaagcct gagagaaaac 361 agggaggcca aggaaccgct gacaggggca atattagaga tgtgggatgg agagatatat 421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagct 481 gtaagcatgg caaaagtgga gctgacgcct ttgtcattgt actggcgtgt ggtctacacc 541 ccccaatacc tcatctcccc tgaaactctc aggaggctca acggagaggc attcccttac 601 accgcctttg acaacaactg ctatgccttt tgctgctggg tattagacct caatgattca 661 tggcttaaca ggaggatggt gcaaagaaca acaggcttct tcagacctta ccaagagtgg 721 aacagaaaac ccctgcctac tatggatgac tccaaaatca agaaggtggc aaacatattc 781 ctgtgttcat tgtccacgtt gttcaccaga cctataaaag acctcatagg aaaaattaaa 841 ccattaaata tcttgaacat cctggcaacg tgtgactgga cattcgccgg aatagtggag 901 tctctgatat tactcgctga actctttgga gttttctgga cacccccaga tgtgtctgct 961 atgatcgctc ccttacttgg agactacgag ttgcaagggc cagaagacct cgccgttgag 1021 ctcgtgcctg tggtgatggg agggattggt ctggtgttgg gattcaccaa agagaaaatt 1081 ggcaaaatgt tgtcctcagc agcatcaacg ctcagggctt gtaaggatct tggtgcctat 1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga agaggccaat 1201 gagctagcca tggtgagagc tatagaggat gctgtactgg atcttgaggc aatagaaaac 1261 aatcacatga caactttgct gaaagacaaa gacagcctag caacctacat gaaaacactg 1321 gacatggagg aggaaaaagc cagaagattg tccacaaaat ctgcatcccc cgacatagtt 1381 gggacgatca acgccctgct ggctcgaata gcagcggcta ggtcactagt ccacagggcc 1441 aaggaggagt tatctagcag gataagacca gtagttgtca tgatatctgg caaaccaggg 1501 ataggaaaaa ctcatttggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg 1561 gatcaaagag tcgggctcat accgagaaat ggtgtggacc attgggatgc atataaaggt 1621 gagagagtcg tgctgtggga cgactatggc atgagcaacc ccattcatga tgctctgcgc 1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaataag 1741 ggaaaagttt ttgacagtga agtcataata attacaacaa accttgccaa tccagcccca 1801 cttgattatg tcaactttga ggcctgctcc aggagaattg acttcctggt ttacgccgag 1861 gcaccagaag tagaaaaggc aaaacgagac tttcctggtc aaccagatat gtggaaggac 1921 gccttcaagt cggacttttc acatatcagg ttgcaacttg cacctcaggg cggctttgac 1981 aagaatggca acaccccaca tggaaaagga gtgatgaaga ccctcaccac cggttccctg 2041 attgcccgtg catcaggctt actgcatgag aggatggatg aatttgaact ccaaggcccc 2101 acagtcacca ccttcaattt cgaccggaac agaatcaccg cattcagaca attggctgca 2161 gaaaataagt atgggttggt ggacaccatg agagttggca atcaattaaa aggggtgaaa 2221 accatggaag aactcaaaca agcaatcaaa aatgtgatca tcaagaggtg ccggatcatc 2281 tacggtggct ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag 2341 gtcaagaaca cctctgtaca gaccaacaac gagttggccg gagccctgca tcacctcaaa 2401 catgcccgga tcaggtacta tgtcaaatgt gtgcaagaag cagtctactc tatcatacaa 2461 attgccggcg ctgcatttgt caccacacgc attgcacgcc gcatgaacat acaagagctt 2521 tggtcgaagc caccattaga ccaaaatgaa tcagaggcta aggaagaggc ccccaagtca 2581 gaagatgacg agttcatcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa 2641 aacaaaactg gccgtggcaa gaaacacact gcattctcta gcaagggctt gagcgatgag 2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag 2761 tatcttcaag acagagacag gtactatgag gaactcgcca tcgccaaggc cacggaagaa 2821 gacttctgtg aggaggagga ggtcaaaatc cgtcagagga tcttccgtcc caccaggaaa 2881 caaaggaagg aagagagggc cacactaggg ctagtaactg gttcagaaat cagaaaaaga 2941 aaccctgatg acttcaaacc taaagggaaa ctgtgggccg atgacaacag aagtgttgac 3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt 3061 ggttctggct ggggcttctg ggtatcacca agcctgttca taacatcaac tcatgtaatt 3121 cctgcaggca taacagaggc atttggagtc cccatcaaac aaatccaggt ccacaaatca 3181 ggtgaatttt gccggttcag attcccaaaa ccaattaggc cagatgtgac aggaatgatc 3241 ttggaagaag gtgcgcctga gggtaccgtg gcaaccgtgc tcatcaaacg ccctaccgga 3301 gagctcatgc cccttgcagc cagaatgggg acacacgcaa ccatgaaaat tcaaggccgc 3361 atggttggcg gacagatggg tatgttgctc actggttcaa atgctaaagg aatggatttg 3421 ggaacaactc ctggtgattg tggctgtccc tacatctaca aaaggggcaa tgactatata 3481 gtcattgggg tgcacacagc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag 3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca 3601 cccattcttg gccctggagg ggcaccaaaa ttgagcacca aaaccaaatt ttggaggtca 3661 tcgaacatgc ctcttccacc agggacatat gagcctgcct acctcggtgg ccgtgacccg 3721 cgtgttaagg gtgggccctc cttgcagcag gtaatgagag accagttgaa gccattcact 3781 gagcccaggg gcaaacctcc aagaccaagt gtgttggaag cagccaaaca aaccatcatc 3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgct 3901 tcacttgaca aaaccacctc cagcgggtat ccccaccacg tccgaaagaa tgaattctgg 3961 aatggtgaga ccttcactgg taagttggca gaccaagcat caaaagcaaa cctaatgttt 4021 gaggaaggga aacacatgac accagtgtat acagcagccc tcaaggacga gctggtcaag 4081 actgacaaag tctatggaaa gatcaagaag agactgctct ggggctctga tttgtccacc 4141 atgatccggt gcgccaggtc ctttggtggg ctcatggatg agatgaaggc acactgcata 4201 tcactcccag tccgagttgg catgaacatg aatgaagatg gtccaataat atttgagaag 4261 cactccagat acaagtacca ctatgatgca gactactccc gctgggattc aacacaacag 4321 agggcagtat tagcagcagc cttggaaatc atggtcaggt tctctgcaga gccacaattg 4381 gcacagatag tcgctgagga tctgttggcc cccagtgtgg tagatgtagg agactttaaa 4441 atttcaataa atgaagggct cccctctggt gtgccatgca cttctcagtg gaattccatc 4501 gcacactggc tgctaaccct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt 4561 gtacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgatata 4621 aaattggacc ctgaaaagtt aaccaccaaa ttgaaggagt acggcctgaa accaactcgc 4681 ccagacaaaa ccgagggacc cctgatcatc agtgaggatt tgaacggact cactttcctt 4741 cggaggacgg tgactcgtga cccagctggc tggtttggaa aattggacca aagttcaata 4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata 4861 ccccactctc aaagacccat acagctcatg gcactgcttg gtgaggcctc ccttcacgga 4921 ccctctttct acagcaaaat tagtaaattg gtcataactg aactcaaaga aggtgggatg 4981 gatttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga 5101 cgctgctcca tctaatgatg gtgccgccgg cctcgtacca gagatcaata atgaggcaat 5161 ggcgctagat ccagtggcgg gcgcagcgat agcagcaccc cttactggtc agcaaaacat 5221 aatagatccc tggattatga ataattttgt gcaagcacct ggtggtgagt ttacagtgtc 5281 acctaggaac tcccctggtg aagtacttct aaatttagaa ttaggcccag aaataaatcc 5341 ctatctggcg catcttgcta ggatgtacaa tggttatgca ggtgggtttg aggtgcaggt 5401 ggtcctggct ggaaatgcgt ttacagcagg gaaagtgatc tttgcagcta taccccccaa 5461 tttcccaact gacaatttga gtgcagcgca gattacaatg tgtcctcatg taattgtaga 5521 tgtcaggcag ttggaaccaa tcaacctccc gatgcctgat gtccgcaaca atttcttcca 5581 ttataatcaa ggttctgatt cgaggttacg cttaattgca atgttgtaca ctccccttag 5641 ggcaaataat tctggggatg atgttttcac tgtgtcatgt agggtgttga ctaggcccag 5701 tcctgacttc tcattcaatt tcctcgtccc gcccactgtg gaatcaaaga caaaaccttt 5761 caccctccct attttgacca tctctgagat gtctaattct agatttccag tgccaattga 5821 ctctctgcac accagtccaa ctgataacat tgttgtccag tgccaaaatg ggcgcgtcac 5881 ccttgatggc gagctaatgg gcaccaccca actcttgccg agtcagatat gtgcttttag 5941 gggtgtgctc accagatcaa caagcagggc cagtgatcaa gctgacgcag caacccctag 6001 actcttcaac tactattggc acatacaact agacaaccta aatgggaccc cgtatgaccc 6061 tgcagaggac ataccagctc ctctggggac gccagacttt cggggcaaag tctttggcgt 6121 agccagccag agaaaccctg acagcacaac aagggcacat gaggcaaaag tggatacaac 6181 atctggccgc ttcaccccaa aattgggctc cctagaaata tccactgaat ctggtgactt 6241 tgaccagaat caaccaacaa gattcacccc agttggcatt ggagttgaca atgaggcaga 6301 ctttcaacaa tggaccttac ccgattattc cggtcagttc acccacaaca tgaatctggc 6361 cccagctgtc gctcccaatt ttcccggtga acagcttctt ttcttccgct cacagttgcc 6421 atcctctggc gggcggtcca atggcattct agactgcctg gtcccccagg aatgggtcca 6481 acacttctac caggaatccg cccctgccca aacgcaggtg gctctggtca ggtatgtcaa 6541 ccctgatact ggtagggtgt tatttgaggc taagctgcat aagctaggct acatgaccat 6601 agctaagagt ggtgattctc caataactgt acccccaaat ggatacttta ggtttgaatc 6661 ttgggtgaat cccttttaca cattagcccc catgggaact gggaatgggc gtagaaggat 6721 tcaataatgg ctggagcctt tatagcagga ttggctggtg acatgctcac aaacactgta 6781 gggtctttag ttaatgcagg ggctggtgct attaatcaaa aagttgattt tgaaaataat 6841 aaatatctac aaaatgcatc ctttaatcat gataaggaga tgttaaatgc acaaattgag 6901 gcaactaaga ggctacaggc tgacatgatt gctatcaaac aaggggtttt gaccgctggc 6961 ggtttctccc ccactgatgc agcccgtggg gctattaacg cccccataac aaaagttctg 7021 gactggagtg gaaccaggta ctgggcacca aatgccacct ccacaacttc aatgtcaggt 7081 ggcttcacag gtcaagctgt gcatagagct acaccaaatt ttaaaaccaa ccaagcccca 7141 aaatccacac ccagcagtgg gtcttcagtg aggtcaagct caacccaact caccaacttg 7201 agctcacact catctgggtc ttctcgatcc agcggatcca cgatggtcag ctcgttacca 7261 tcttccagca ggactagaga ctgggttaac caacagaatt ttaatttgga accacacatg 7321 cctggatctc ttaggacagc ttttgttact ccaccatcta gtacagcctc tagcttagac 7381 acggtctcaa ccgtgcccaa gagtgttttg gactcctgga cacctgcgtt taacacgcgc 7441 agacagccgc tcttcgcaca ccttcgtaga aggggggagt caaatattta gtgaaaagat 7501 tattcttaaa tttggtttgt aattggattt aaattagaat cttttaaaaa aaaa //