Human calicivirus
Typing tool

Complete norovirus genomes

KF944065  GII.3
 GII.P21

Length: 3,193 | 3 CDS 

ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193

LOCUS       KF944065                3193 bp    RNA     linear   VRL 01-AUG-2019
DEFINITION  Norovirus GII strain
            Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N1175/2010 RNA-dependent RNA
            polymerase (POL) gene, partial cds; major capsid protein VP1 (VP1)
            gene, complete cds; and minor capsid protein VP2 (VP2) gene,
            partial cds.
ACCESSION   KF944065
VERSION     KF944065.2
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
            Netesov,S.V. and Tikunova,N.V.
  TITLE     Molecular epidemiology of noroviruses associated with sporadic
            gastroenteritis in children in Novosibirsk, Russia, 2003-2012
  JOURNAL   J. Med. Virol. 87 (5), 740-753 (2015)
   PUBMED   25693507
REFERENCE   2  (bases 1 to 3193)
  AUTHORS   Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
            Sedelnikova,D. and Tikunova,N.
  TITLE     Changing pattern of prevalence and genetic diversity of rotavirus,
            norovirus, astrovirus, and bocavirus associated with childhood
            diarrhea in Asian Russia, 2009-2012
  JOURNAL   Infect. Genet. Evol. 67, 167-182 (2019)
   PUBMED   30414977
REFERENCE   3  (bases 1 to 3193)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2013) Siberian Branch of Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine,
            Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE   4  (bases 1 to 3193)
  AUTHORS   Zhirakovskaya,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2018) Siberian Branch of Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine,
            Lavrentiev Ave. 8, Novosibirsk 630090, Russia
  REMARK    Sequence update by submitter
COMMENT     On Feb 7, 2018 this sequence version replaced KF944065.1.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N1175/2010"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: M; age: 11 months"
                     /db_xref="taxon:122929"
                     /country="Russia: Novosibirsk region"
                     /collection_date="11-Nov-2010"
                     /note="genotype: GII.P21/GII.3"
     gene            <1..825
                     /gene="POL"
     CDS             <1..825
                     /gene="POL"
                     /note="ORF1; RdRp"
                     /codon_start=1
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="AUZ98485.1"
                     /translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL
                     SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
                     SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
                     RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
                     YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            806..2452
                     /gene="VP1"
     CDS             806..2452
                     /gene="VP1"
                     /note="ORF2"
                     /codon_start=1
                     /product="major capsid protein VP1"
                     /protein_id="AIS24511.2"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
                     QNIIDTWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGIPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNQS
                     TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
     gene            2452..>3193
                     /gene="VP2"
     CDS             2452..>3193
                     /gene="VP2"
                     /note="ORF3"
                     /codon_start=1
                     /product="minor capsid protein VP2"
                     /protein_id="AUZ98486.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPGATSTTSMSGGFTDQTVHRSTPNFKTNQVPKSTPSSGSSVRSNSTQITSLGS
                     HSSGSSRSSGSTIVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN      
        1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtactggct
       61 gcagccctgg aaataatggt caaattctca ccagaacccc atctggccca agtagttgca
      121 gaagacctct tgtcccccag tgtgatggac gtgggtgatt tcaaaatatc aatcaacgag
      181 ggattaccct ctggtgttcc ttgcacctca caatggaact ccattgccca ctggctcctc
      241 acactatgtg cactgtctga agtcacagac ctgtctcctg atatcatcca ggcgaattcc
      301 ctgttctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag
      361 aaattgacaa caaaattgaa ggaatacggg ctcaaaccaa cccgtcctga taaaacagaa
      421 ggacccttaa ttatctctga agatttggat ggcctgacct tcttgcggag aacagtgacc
      481 cgtgatccgg ccggatggtt tggcaaactg gaccaaagtt caatactcag gcagatgtac
      541 tggaccaagg gaccaaacca tgaggacccc tttgaaacaa tgataccaca ctcccaaaga
      601 cccatacaac tgatgtcatt actgggtgaa gctgcattgc atggtccatc attctacagt
      661 aaaatcagca aattggtcat ctcagaattg aaagagggtg gaatggattt ttacgtgccc
      721 agacaagaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
      781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
      841 tgatggtgcc gccggcctcg tcccagagat caataatgag gcaatggcgc tagagccagt
      901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atacctggat
      961 tatgaataat tttgtgcaag cacctggtgg tgagttcaca gtatccccca gaaattcccc
     1021 tggtgaagtt cttcttaatt tggaactggg cccagaaata aatccctatt tggcccatct
     1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtggtcc tagctggaaa
     1141 tgcgtttaca gcaggaaaga taatctttgc agctattccc cccaattttc caattgacaa
     1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
     1261 accagtcaac ctcccgatgc ctgacgttcg caacaacttc tttcattaca atcaggggtc
     1321 tgattcgaga ttgcgcctga ttgcaatgtt gtatacacct cttagggcta ataattctgg
     1381 ggatgatgtt ttcactgtgt cttgcagagt gctaactaga cctagtcctg acttctcatt
     1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctattct
     1501 gactatctct gaaatgtcca attctaggtt cccagtacca attgattctc tgcacaccag
     1561 tcctactgag aatattgttg ttcagtgcca gaatgggcgc gtcacccttg atggtgagtt
     1621 gatgggcacc acccaactct tacctagtca aatctgtgct ttcaggggcg ttttgaccag
     1681 atcaacaagc agggccagtg atcaggccga tacagcaact cctagattgt ttaattatta
     1741 ttggcatata caattggaca atctaaatgg aactccttat gatcctgcag aagacatacc
     1801 aggcccccta gggataccag atttccgggg caaagtcttt ggcgtggcca gccagagaaa
     1861 tcctgatgcc acgaccaggg cgcatgaagc aaagatagac acaacatctg gccgcttcac
     1921 cccaaagcta ggctcattag agatatccac tgaatctgat gattttgatc aaaaccaatc
     1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggac
     2041 tctacccgac tacgctggcc agttcacaca caacatgaac ttagccccag ctgttgctcc
     2101 taacttccct ggtgagcagc tccttttctt ccgctcacag ttgccatcct ctggtgggcg
     2161 atccaacggg attctagact gcctggtccc ccaagaatgg gtgcagcact tctaccagga
     2221 atcagccccc tctcagtctc aagtggccct ggttaggtat atcaaccctg acactggtag
     2281 agtgttattt gaggccaagc tgcacaaatt aggtttcatg actatagcca agaatggtga
     2341 ttctccaata actgtccctc caaatggata ctttaggttt gaatcttggg tgaacccctt
     2401 ttacacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
     2461 gcttttatag caggattggc tggtgacatg cttacaaata ctgtaggatc tttagttaat
     2521 gcaggggcta atgctattaa tcaaacaatt gattttgaaa ataataaata tttgcaaaat
     2581 gcttctttca atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta
     2641 caggctgaca tgattgctat caaacaaggg gttttaaccg ctggcggctt ctcccccact
     2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg
     2761 agatactggg caccaggtgc cacctccaca acctcgatgt cgggtggctt tacagatcaa
     2821 actgtgcaca gatccacacc aaattttaaa acgaaccagg ttcccaaatc cacacccagc
     2881 agtgggtctt cagtgaggtc aaattcaact caaatcacta gcctgggctc acactcgtcc
     2941 gggtcgtctc gatccagcgg gtctacaatt gtcagctcaa taccatcctc taacaggact
     3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg gtctcttagg
     3061 acagcttttg tcactccacc atctagtaca gcctctagct caggcacagt ctcaaccgtg
     3121 cccaaaaatg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctattc
     3181 gcacaccttc gca
//