Typing tool
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Typing tool
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Complete norovirus genomes
| KF931324 | GII.3 | |
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| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193
LOCUS KF931324 3193 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus GII strain Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-D59/2009
RNA-dependent RNA polymerase (POL) gene, partial cds; major capsid
protein VP1 (VP1) gene, complete cds; and minor capsid protein VP2
(VP2) gene, partial cds.
ACCESSION KF931324
VERSION KF931324.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Feb 7, 2018 this sequence version replaced KF931324.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3193
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-D59/2009"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 4 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="20-May-2009"
/note="genotype: GII.P21/GII.3"
gene <1..825
/gene="POL"
CDS <1..825
/gene="POL"
/note="ORF1; RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AUZ98479.1"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2452
/gene="VP1"
CDS 806..2452
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AIS24432.2"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNKP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..>3193
/gene="VP2"
CDS 2452..>3193
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUZ98480.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHKSTPNFKTNQAPKSAPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTHRQPLFAHLR"
ORIGIN
1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtattggct
61 gcagccctgg aaataatggt caaattctca ccagaacccc atctggccca agtagttgca
121 gaagacctct tgtcccccag tgtgatggat gtgggtgatt tcaagatatc aatcaacgag
181 ggattaccct ctggtgttcc ttgcacctcg caatggaact ccattgccca ctggctcctc
241 acactatgtg cactgtctga agtcacagac ctatcccctg acatcatcca ggcgaattcc
301 ctgttctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag
361 aaattgacaa caaaattgaa ggaatacggg ctcaaaccaa cccgtcctga taaaacagaa
421 ggacccttaa ttatctctga agatttggat ggtctgacct tcttacggag aacagtgacc
481 cgtgatccgg ccgggtggtt tggcaaactg gaccaaagtt caatactcag gcagatgtac
541 tggaccaagg gaccaaacca tgaggatccc tttgaaacaa tgataccaca ctcccaaaga
601 cccatacaac tgatgtcatt actgggtgaa gccgcattgc atggtccatc attctacagt
661 aaaatcagca aattggtcat ctcagaattg aaagagggtg gaatggattt ttacgtgccc
721 agacaagaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caataatgag gcaatggcgc tagagccagt
901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat
961 tatgaacaat tttgtgcaag cacctggtgg tgagtttaca gtatccccta gaaattcccc
1021 tggtgaggtt cttcttaatt tggaattggg accagaaata aatccctatt tggcccatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtggtcc tagctggaaa
1141 tgcgtttaca gcaggaaaga taatctttgc agctattcca cccaattttc caattgacaa
1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
1261 accagtcaac ctcccgatgc ctgacgttcg caacaacttc tttcattaca atcaagggtc
1321 tgattcgaga ttgcgcctaa ttgcaatgct atatacacct cttagggcaa ataattctgg
1381 ggatgatgtt tttactgtgt cttgcagagt gctaactaga cctagtcctg acttctcgtt
1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctattct
1501 gactatctct gaaatgtcca attctaggtt cccggtacca attgattctc tgcacaccag
1561 tcccactgag aatattgttg tccagtgcca gaatgggcgc gtcacccttg atggtgagtt
1621 gatgggcacc acccaactct tacctagcca aatctgtgct ttcaggggcg ttctcaccag
1681 atcaacaagc agggccagtg accaggccga tacagcaacc cctagattgt ttaattatta
1741 ttggcatata caattggata atctaaatgg aactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag acttccgggg caaagtcttt ggcgtggcca gccagagaaa
1861 tcctgatgcc acgactagag cacatgaagc aaagatagac acaacatctg gccgcttcac
1921 cccaaaacta ggctcattag agatatccac tgaatctgat gattttgatc aaaacaaacc
1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggac
2041 tctacccgac tacgctggcc agttcaccca caacatgaac ttagccccag ctgttgctcc
2101 caacttccct ggtgagcagc tccttttctt tcgctcacag ttgccatctt ctggtgggcg
2161 atccaacggg attctagact gcctggtccc ccaagaatgg gtacagcact tctaccaaga
2221 atcagccccc tctcaatctc aagtggccct ggttaggtat atcaaccctg acactggtag
2281 agtgttattt gaggccaagc tgcacaaatt aggtttcatg actatagcca aaaatggtga
2341 ttctccaata actgtccctc caaatggata ctttaggttt gaatcttggg tgaacccctt
2401 ttatacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gcttttatag caggattggc tggtgacatg ctcacaaata ctgtaggatc tttagttaat
2521 gcaggggcta atgccattaa tcaaacagtt gattttgaaa ataataaata tttgcaaaat
2581 gcttctttca atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta
2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccctact
2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg
2761 agatactggg caccaggtgc cacctccaca acctcgatgt cgggtggctt tacaaatcaa
2821 actgtgcaca aatccacacc aaattttaaa acgaaccagg ctcccaaatc cgcacccagc
2881 agtgggtctt cagtaaggtc aaattcaacc caaatcacta gcctgagctc acactcgtcc
2941 gggtcgtctc gatccagcgg atctacagtt gtcagctcaa taccatcctc taacaggact
3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg atctcttagg
3061 acagcttttg tcactccacc atctagtaca gcctctagct caggcacagt ctcaactgtg
3121 cccaaaaatg ttttggactc ctggacatct gcgtttaaca cgcacagaca gccgctattc
3181 gcacaccttc gca
//