Typing tool
|
Complete norovirus genomes
KF931267 | GII.3 | ||
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GII.P21 |
ORF1: 1..825 ORF2: 806..2452 ORF3: 2452..3193LOCUS KF931267 3193 bp RNA linear VRL 17-DEC-2018 DEFINITION Norovirus GII isolate Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1999/2007 RNA-dependent RNA polymerase (POL) gene, partial cds; major capsid protein VP1 (VP1) gene, complete cds; and minor capsid protein VP2 (VP2) gene, partial cds. ACCESSION KF931267 VERSION KF931267.3 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3193) AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V., Netesov,S.V. and Tikunova,N.V. TITLE Molecular epidemiology of noroviruses associated with sporadic gastroenteritis in children in Novosibirsk, Russia, 2003-2012 JOURNAL J. Med. Virol. 87 (5), 740-753 (2015) PUBMED 25693507 REFERENCE 2 (bases 1 to 3193) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (05-DEC-2013) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REFERENCE 3 (bases 1 to 3193) AUTHORS Zhirakovskaya,E. TITLE Direct Submission JOURNAL Submitted (07-FEB-2018) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 3193) AUTHORS Zhirakovskaya,E. TITLE Direct Submission JOURNAL Submitted (25-APR-2018) Siberian Branch of Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine, Lavrentiev Ave. 8, Novosibirsk 630090, Russia REMARK Sequence update by submitter COMMENT On Apr 25, 2018 this sequence version replaced KF931267.2. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3193 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1999/2007" /isolation_source="feces" /host="Homo sapiens; sex: M; age: 10 months" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="12-Mar-2007" /note="genotype: GII.P21/GII.3" gene <1..825 /gene="POL" CDS <1..825 /gene="POL" /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AUZ98475.2" /translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSETTDLSPDTIQANSLF SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT RDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSF YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 806..2452 /gene="VP1" CDS 806..2452 /gene="VP1" /note="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AIS24375.3" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP TRFTPVGIGVDQEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ" gene 2452..>3193 /gene="VP2" CDS 2452..>3193 /gene="VP2" /note="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AWD31680.1" /translation="MAGAFIAGLAGDMLTNTVGSLVSAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPNATSTTPMSGGFTSQAVHRTTPGLKTNQTPKPTSNSGSSVRSNSTQITSLSS HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSN TVSTVPKNVLDSWTSAFNTRRQPLFAHLR" ORIGIN 1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtactggct 61 gcagctctgg aaataatggt caaattctca tcagaacctc atctggccca agtagttgca 121 gaagacctct tgtcccccag tgtgatggat gtgggtgatt tcaagatatc aattaacgag 181 gggttaccct ctggtgtacc ttgtacctca cagtggaact ccattgccca ctggctcctc 241 acactatgtg cattgtctga aaccacagac ctgtcccctg acaccatcca ggcaaactcc 301 ctattctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag 361 aagttgacaa caaaattgaa ggaatatggg ctaaaaccaa cccgtcctga taaaacagaa 421 ggacccttaa ttatctctga agatttggat ggcctgacct tcttacggag aacggtgacc 481 cgtgatccgg ctgggtggtt cggcaaactg gaccaaagtt caatactcag acagatgtac 541 tggaccaggg gaccaaacca tgaggacccc tctgaaacaa tgataccaca ctcccaaaga 601 cccatacaac tgatgtcact actgggtgaa gctgcattac atggtccatc attctacagc 661 aagatcagca aattggtcat ctcagaattg aaagaaggtg gaatggattt ttacgtgccc 721 agacaagaac caatgtttag gtggatgcga ttctcagatt tgagcacgtg ggagggcgat 781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgcca ccccatctaa 841 tgatggtgcc gccggcctcg tcccagagat caacaatgag gcaatggcgc tagacccagt 901 ggcgggtgca gcgatagcag caccccttac tggtcagcaa aatataattg atccctggat 961 tatgaacaat tttgtgcaag cacctggtgg tgagtttaca gtatccccta ggaattcccc 1021 tggtgaagtg cttcttaatt tggaattagg cccagaaata aacccctatt tggctcatct 1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtggtcc tggctggaaa 1141 tgcgtttaca gcaggaaaga taatctttgc agctataccc cctaattttc caattgataa 1201 tctgagcgca gcacagatca caatgtgccc gcatgtgatt gtggatgtca gacagttgga 1261 accggtcaac cttccgatgc ctgacgttcg caacaatttc tttcattaca atcaagggtc 1321 tgattcgaga ttgcgtttaa ttgcaatgct gtatacacct cttagggcaa ataattctgg 1381 ggatgatgtt tttactgtgt cttgtagagt gttaactagg cctagccctg acttttcatt 1441 taatttcctt gtgccaccca ctgtggagtc aaagacaaaa cccttcaccc tccctattct 1501 gactatctct gaaatgtcca actctaggtt tccagtgccg attgactctc tgcataccag 1561 tccaactgag aatattgttg tccagtgcca aaatgggcgc gtcactcttg atggtgagtt 1621 gatgggcacc acccaacttt taccgagtca aatctgtgct tttaggggcg tgctcaccag 1681 atcaacaagc agggccagtg atcaggccga tacagcaacc cctaggttat ttaattatta 1741 ttggcacata caattggata atctaaatgg aactccttat gatcctgcag aagacatacc 1801 aggcccccta gggacaccag acttccgggg caaagtcttt ggcgtggcca gccagaggaa 1861 ccccgacagc acaactagag cacatgaagc aaaggtggac acaacagctg gtcgtttcac 1921 cccaaaatta ggctcgttag agatatccac tgaatctggt gactttgatc aaaaccaacc 1981 aacaagattc accccagttg gcattggggt tgaccaagag gcagactttc aacaatggtc 2041 tttacccgac tattctggtc agttcaccca caacatgaac ttggccccag ctgtcgctcc 2101 caacttccct ggtgagcagc tccttttctt ccgctcacag ttaccatcct ctggtgggcg 2161 atccaacggg attctagact gcctggtccc ccaagaatgg gttcagcact tctaccaaga 2221 atcggccccc gcccaaacac aagtggccct ggttaggtat gttaaccctg acaccggcag 2281 agtgttattt gaggccaagt tacacaaatt aggctttatg accatagcta agaatggtga 2341 ttctccaata actgttcctc caaatggata ctttaggttt gaatcttggg tgaacccctt 2401 ttatacatta gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga 2461 gctttcatag caggattggc tggtgacatg cttactaata ctgtagggtc tctagttagt 2521 gcaggggcta atgctattaa tcagaaagtt gattttgaaa ataacaaata tttacaaaat 2581 gcatccttca atcatgataa ggagatgtta aatgcacaaa ttgaggcaac aaagaggtta 2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccctact 2701 gatgcagccc gcggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg 2761 aggtactggg caccaaatgc cacctccaca actccaatgt cgggtggctt tacaagtcag 2821 gctgtgcaca gaaccacgcc aggtcttaaa acgaaccaga ctcccaaacc cacatccaac 2881 agtgggtctt cagtgaggtc aaattcaacc caaatcacta gcctgagctc acactcgtcc 2941 gggtcttctc gatccagcgg gtccacagta gttagctcat taccatcctc taacaggact 3001 agggactggg tcaaccaaca gaattttaat ttggaaccac acatgcctgg gtcccttagg 3061 acagcttttg tcactccacc atctagcaca gcctctagtt caaacacggt ctcaaccgtg 3121 cccaaaaatg ttttggactc ctggacatct gcgttcaata cgcgcagaca gccgctattc 3181 gcacaccttc gca //