Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KF931243 | GII.3 | |
|
|---|---|---|---|
| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193
LOCUS KF931243 3193 bp RNA linear VRL 17-DEC-2018
DEFINITION Norovirus GII isolate
Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1818/2007 RNA-dependent RNA
polymerase (POL) gene, partial cds; major capsid protein VP1 (VP1)
gene, complete cds; and minor capsid protein VP2 (VP2) gene,
partial cds.
ACCESSION KF931243
VERSION KF931243.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (25-APR-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 25, 2018 this sequence version replaced KF931243.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3193
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1818/2007"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 9 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="24-Jan-2007"
/note="genotype: GII.P21/GII.3"
gene <1..825
/gene="POL"
CDS <1..825
/gene="POL"
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AUZ98474.2"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
RDPAGWFGKLDQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2452
/gene="VP1"
CDS 806..2452
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AIS24351.3"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGTDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTESIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDHADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..>3193
/gene="VP2"
CDS 2452..>3193
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AWD31679.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIRQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSTSGGFTNQAVHRATPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSLSSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDPWTSAFNTRRQPLFAHLR"
ORIGIN
1 tatcattatg atgcagatta ctcccgctgg gattcaacac aacaaagagc agtgctggct
61 gcagctctgg aaataatggt caaattctca tcagaacctc atctggccca agtagtcgca
121 gaagaccttt tgtcccccag tgtgatggat gtgggtgatt ttaagatatc aatcaacgag
181 gggttgccct ctggtgtacc ttgtacctca caatggaact ccattgccca ctggctccta
241 acactatgtg cactgtctga ggtcacagat ctgtcccctg acatcatcca ggcaaactcc
301 ctgttctcct tttatggtga tgatgagata gtgagcacag acatcaaact ggacccagag
361 aaattgacaa caaaattgaa agaatacggg ctaaaaccaa cccgtcctga caaaacagaa
421 ggacccttaa ttatctctga agatttggat ggcctgacct tcttacggag aacggtgacc
481 cgtgatccgg ctggatggtt tggcaagctg gaccaaagtt caatactcag gcagatgtac
541 tggaccaggg gaccaaacca tgaggacccc tttgagacaa tgataccaca ctcccaaaga
601 cccatacaat tgatgtcact actgggtgaa gctgcattgc atggcccgtc attctacagt
661 aaaattagca aattggttat ctcagaattg aaagagggtg gaatggactt ttacgtgccc
721 agacaagaac caatgtttag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgcca ctccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caacaatgag gcaatggcgc tagatccagt
901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat
961 tatgaataat tttgtgcaag cacctggtgg tgagtttaca gtgtccccta ggaattcccc
1021 tggtgaagtg cttcttaatt tggaattggg cccagaaata aatccctatt tggcccatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtagtcc tagctggaaa
1141 cgcgtttaca gcaggaaaga taatctttgc agctataccc cctaatttcc caattgacaa
1201 tttaagcgca gcacagatca caatgtgccc acatgtgatt gtggacgtca gacagttgga
1261 accagtcaac ctcccgatgc ctgacgttcg caacaacttc tttcattaca atcaaggaac
1321 tgattcgaga ttgcgcttaa ttgcaatgct gtatacgcct cttagggcaa ataattctgg
1381 ggatgatgtt ttcactgtat cttgtagagt gctgactagg cctagccctg acttctcatt
1441 taatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttcaccc ttcctattct
1501 gactatctct gaaatgtcca attctaggtt cccagtgccg attgactctc tgcacaccag
1561 cccaactgag agtattgttg tccagtgcca aaatgggcgc gtcactcttg atggtgagtt
1621 gatgggcacc acccaactct tacctagtca aatctgtgct ttcaggggcg tgctcaccag
1681 atcaacaagc agggccagtg atcatgccga cacagcaacc cctaggttat ttaattatta
1741 ttggcacata caattggaca atctaaatgg gactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag atttccgggg caaagtcttt ggcgtggcca gccagagaaa
1861 ccccgacagc acaactagag cacatgaagc aaaggtggac acaacagctg gtcgcttcac
1921 cccaaaatta ggttcattag agatatccac tgaatctggc gactttgatc aaaaccaacc
1981 aacaagattc accccagttg gcattggggt tgacaatgaa gcagacttcc aacaatggtc
2041 tttacccgac tattctggtc agttcaccca caacatgaac ttagccccag ctgttgctcc
2101 caacttccct ggtgaacagc tccttttctt ccgctcacag ttaccatcct ctggcgggcg
2161 atccaacggg gttctagact gcctggtccc ccaagagtgg gttcagcact tctatcaaga
2221 atcggccccc gctcaaactc aagtggccct agttaggtat gtcaaccctg acactggtag
2281 agtattattt gaggccaagc tgcacaaatt gggtttcatg actatagcta agaatggtga
2341 ctctccaata actgtccctc caaatggata ctttaggttt gaatcttggg tgaacccatt
2401 ttatacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gcttttatag caggattagc tggtgatata ttcacaaaca ctgtaggatc tttagttaat
2521 gcaggggcta atgccattaa tcaaaaagtt gattttgaaa ataataaata tttacaaaat
2581 gcttctttta atcatgataa ggaaatgtta aatgcacaaa ttgaagcaac aaagaggtta
2641 caggctgaca tgattgctat cagacaaggg gttttgaccg ctggcggctt ctcccctact
2701 gatgcagccc gcggggcaat taatgccccc atgacaaaag tcctagattg gaatgggacc
2761 aggtactggg caccaaatgc cacctctaca acctcgacgt cgggtggttt cacaaatcag
2821 gctgtgcaca gagccacgcc aaattttaaa acgaaccagg ctcccaaatc cacacccagc
2881 agtgggtctt cagtgaggtc aaactcaacc caaatcacta gcctgagctc acactcgtcg
2941 gggtcgtctc gatccagcgg gtctacagtt gttagctcac tatcatcctc taacaggact
3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg gtctcttagg
3061 acagcttttg ttactccacc atccagtaca gcctctagtt caggcacagt ctcaaccgtg
3121 cccaaaaatg ttttggaccc ctggacatct gcgttcaaca cgcgcagaca gccgctattc
3181 gcacaccttc gca
//