Human calicivirus
Typing tool

Complete norovirus genomes

KF931234  GII.3
 GII.P21

Length: 3,164 | 3 CDS 

ORF1: 1..796
ORF2: 777..2423
ORF3: 2423..3164

LOCUS       KF931234                3164 bp    RNA     linear   VRL 17-DEC-2018
DEFINITION  Norovirus GII isolate
            Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1763/2007 RNA-dependent RNA
            polymerase (POL) gene, partial cds; major capsid protein VP1 (VP1)
            gene, complete cds; and minor capsid protein VP2 (VP2) gene,
            partial cds.
ACCESSION   KF931234
VERSION     KF931234.2
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
            Netesov,S.V. and Tikunova,N.V.
  TITLE     Molecular epidemiology of noroviruses associated with sporadic
            gastroenteritis in children in Novosibirsk, Russia, 2003-2012
  JOURNAL   J. Med. Virol. 87 (5), 740-753 (2015)
   PUBMED   25693507
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2013) Siberian Branch of Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine,
            Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE   3  (bases 1 to 3164)
  AUTHORS   Zhirakovskaya,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Siberian Branch of Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine,
            Lavrentiev Ave. 8, Novosibirsk 630090, Russia
  REMARK    Sequence update by submitter
COMMENT     On Apr 25, 2018 this sequence version replaced KF931234.1.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /isolate="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1763/2007"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: M; age: 6 months"
                     /db_xref="taxon:122929"
                     /country="Russia: Novosibirsk"
                     /collection_date="07-Jan-2007"
                     /note="genotype: GII.P21/GII.3"
     gene            <1..796
                     /gene="POL"
     CDS             <1..796
                     /gene="POL"
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="AWD31677.1"
                     /translation="DSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDF
                     KISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVS
                     TDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKL
                     DQSSILRQMYWTRGPNHEDPLETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVIS
                     ELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            777..2423
                     /gene="VP1"
     CDS             777..2423
                     /gene="VP1"
                     /note="ORF2"
                     /codon_start=1
                     /product="major capsid protein VP1"
                     /protein_id="AIS24342.2"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGTDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTESIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDHADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
                     TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
     gene            2423..>3164
                     /gene="VP2"
     CDS             2423..>3164
                     /gene="VP2"
                     /note="ORF3"
                     /codon_start=1
                     /product="minor capsid protein VP2"
                     /protein_id="AWD31678.1"
                     /translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIRQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPNATSTTSTSGGFTNQAVHRATPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
                     HSSGSSRSSGSTVVSSLSSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN      
        1 ggattcaaca caacaaagag cagtgctggc tgcagctctg gaaataatgg tcaaattctc
       61 atcagaacct catctggccc aagtagtcgc agaagacctt ttgtccccca gtgtgatgga
      121 tgtgggtgat tttaagatat caatcaacga ggggttgccc tctggtgtac cttgtacctc
      181 acaatggaac tccattgccc actggctcct aacactatgt gcactgtctg aggtcacaga
      241 tctgtcccct gacatcatcc aggcaaactc cctgttctcc ttttatggtg atgatgagat
      301 agtgagcaca gacatcaaac tggacccaga gaaattgaca acaaaattga aagaatacgg
      361 gctaaaacca acccgtcctg acaaaacaga aggaccctta attatctctg aagatttgga
      421 tggcctgacc ttcttacgga gaacggtgac ccgtgatccg gctggatggt ttggcaagct
      481 ggaccaaagt tcaatactca ggcagatgta ctggaccagg ggaccaaacc atgaggaccc
      541 tttggagaca atgataccac actcccaaag acccatacaa ttgatgtcac tactgggtga
      601 agctgcattg catggcccgt cattctacag taaaattagc aaattggtta tctcagaatt
      661 gaaagagggt ggaatggact tttacgtgcc cagacaagaa ccaatgttta ggtggatgag
      721 attctcagat ttgagcacgt gggagggcga tcgcaatctg gctcccagtt ttgtgaatga
      781 agatggcgtc gaatgacgcc actccatcta atgatggtgc cgccggcctc gtcccagaga
      841 tcaacaatga ggcaatggcg ctagatccag tggcgggtgc agcgatagca gcacccctca
      901 ctggtcagca aaatataatt gatccctgga ttatgaataa ttttgtgcaa gcacctggtg
      961 gtgagtttac agtgtcccct aggaattccc ctggtgaagt gcttcttaat ttggaattgg
     1021 gcccagaaat aaatccctat ttggcccatc ttgctagaat gtataatggt tatgcaggtg
     1081 gatttgaagt gcaggtagtc ctagctggaa acgcgtttac agcaggaaag ataatctttg
     1141 cagctatacc ccctaatttc ccaattgaca atttaagcgc agcacagatc acaatgtgcc
     1201 cacatgtgat tgtggacgtc agacagttgg aaccagtcaa cctcccgatg cctgacgttc
     1261 gcaacaactt ctttcattac aatcaaggaa ctgattcgag attgcgctta attgcaatgc
     1321 tgtatacacc tcttagggca aataattctg gggatgatgt tttcactgta tcttgtagag
     1381 tgctgactag gcctagccct gacttctcat ttaatttcct tgtgccacct actgtggagt
     1441 caaagacaaa acccttcacc cttcctattc tgactatctc tgaaatgtcc aattctaggt
     1501 tcccagtgcc gattgactct ctgcacacca gcccaactga gagtattgtt gtccagtgcc
     1561 aaaatgggcg cgtcactctt gatggtgagt tgatgggcac cacccaactc ttacctagtc
     1621 aaatctgtgc tttcaggggc gtgctcacca gatcaacaag cagggccagt gatcatgccg
     1681 acacagcaac ccctaggtta tttaattatt attggcacat acaattggac aatctaaatg
     1741 ggactcctta tgatcctgca gaagacatac caggccccct agggacacca gatttccggg
     1801 gcaaagtctt tggcgtggcc agccagagaa accccgacag cacaactaga gcacatgaag
     1861 caaaggtgga cacaacagct ggtcgcttca ccccaaaatt aggttcatta gagatatcca
     1921 ctgaatctgg cgactttgat caaaaccaac caacaagatt caccccagtt ggcattgggg
     1981 ttgacaatga agcagacttc caacaatggt ctttacccga ctattctggt cagttcaccc
     2041 acaacatgaa cttagcccca gctgttgctc ccaacttccc tggtgaacag ctccttttct
     2101 tccgctcaca gttaccatcc tctggcgggc gatccaacgg ggttctagac tgcctggtcc
     2161 cccaagagtg ggttcagcac ttctatcaag aatcggcccc cgctcaaact caagtggccc
     2221 tagttaggta tgtcaaccct gacactggta gagtattatt tgaggccaag ctgcacaaat
     2281 tgggtttcat gactatagct aagaatggtg actctccaat aactgtccct ccaaatggat
     2341 actttaggtt tgaatcttgg gtgaacccat tttatacact tgcccccatg ggaactggga
     2401 atgggcgtag aaggattcaa taatggctgg agcttttata gcaggattag ctggtgatat
     2461 attcacaaac actgtaggat ctttagttaa tgcaggggct aatgccatta atcaaaaagt
     2521 tgattttgaa aataataaat atttacaaaa tgcttctttt aatcatgata aggaaatgtt
     2581 aaatgcacaa attgaagcaa caaagaggtt acaggctgac atgattgcta tcagacaagg
     2641 ggttttgacc gctggcggct tctcccctac tgatgcagcc cgcggggcaa ttaatgcccc
     2701 catgacaaaa gtcctagatt ggaatgggac caggtactgg gcaccaaatg ccacctctac
     2761 aacctcgacg tcgggtggtt tcacaaatca ggctgtgcac agagccacgc caaattttaa
     2821 aacgaaccag gctcccaaat ccacacccag cagtgggtct tcagtgaggt caaactcaac
     2881 ccaaatcact agcctgagct cacactcgtc ggggtcgtct cgatccagcg ggtctacagt
     2941 tgttagctca ctatcatcct ctaacaggac tagggactgg gtcaaccaac aaaattttaa
     3001 tttggaacca cacatgcctg ggtctcttag gacagctttt gttactccac catccagtac
     3061 agcctctagt tcaggcacag tctcaaccgt gcccaaaaat gttttggact cctggacatc
     3121 tgcgttcaac acgcgcagac agccgctatt cgcacacctt cgca
//