Typing tool
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Typing tool
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Complete norovirus genomes
| KF931180 | GII.3 | |
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| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3216
LOCUS KF931180 3299 bp RNA linear VRL 16-JUL-2019
DEFINITION Norovirus GII isolate Hu/GII.3/Novosibirsk/Nsk-H382/2004/RUS
nonstructural polyprotein, RNA-dependent RNA polymerase region,
(ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and
minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION KF931180
VERSION KF931180.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3299)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3299)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3299)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Dec 14, 2018 this sequence version replaced KF931180.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3299
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-H382/2004"
/isolate="Hu/GII.3/Novosibirsk/Nsk-H382/2004/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 7 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk region"
/collection_date="29-Feb-2004"
/note="genotype: GII.P21/GII.3"
gene <1..825
/gene="ORF1"
CDS <1..825
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AIS24283.2"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
RDPAGWFGKLDQGSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..822
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 806..2452
/gene="ORF2"
CDS 806..2452
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX14840.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPVTVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..3216
/gene="ORF3"
CDS 2452..3216
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX14841.2"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQVVHSTTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 3217..3269
ORIGIN
1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtgctggct
61 gcagctctgg aaataatggt caaattctcg tcagagcctc atctggctca agtagttgca
121 gaagacctct tatcccctag tgtgatggat gtgggtgatt tcaagatatc aatcaacgag
181 gggttaccct ctggtgtacc ttgcacctca caatggaact ccattgccca ctggctcctc
241 acactgtgtg cgctgtctga agtcacagat ctgtcccctg acatcatcca ggcaaactcc
301 ctattctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag
361 aaattgacaa caaaattgaa ggaatacggg ctaaaaccaa cccgtcctga taaaacagaa
421 ggacctttaa ttatctctga agacttggat ggcctgacct tcttacggag aacggtgacc
481 cgtgatccgg ctgggtggtt tggcaaactg gaccaaggct caatactcag gcagatgtac
541 tggaccaggg gaccaaacca tgaggacccc tctgaaacaa tgataccaca ctcacaaaga
601 cccatacagt tgatgtcact actgggtgaa gctgcattac atggcccatc attctacagt
661 aaaattagca aattggttat ctcagaattg aaagagggtg ggatggattt ttacgtgccc
721 agacaagaac caatgtttag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgcca ctccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caacaatgag gcaatggcgc tagatccagt
901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aacataattg atccctggat
961 tatgaataat tttgtgcaag cacctggtgg tgagtttaca gtatccccta ggaattcccc
1021 tggtgaagtg cttcttaatt tggaattggg tccagaaata aatccctatt tggcccatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtagtcc ttgctggaaa
1141 tgcgtttaca gcaggaaaga taatctttgc agctataccc cctaattttc caattgacaa
1201 tctaagcgca gcgcagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
1261 accggtcaac ctcccgatgc ctgacgttcg caacaacttc tttcattaca atcaagggtc
1321 tgattcgaga ttgcgtttaa ttgcaatgct gtatacacct cttagggcaa ataattctgg
1381 ggatgatgtt ttcactgtgt cttgtagagt gcttactagg cctagccctg atttttcatt
1441 taattttctt gtgccaccca ctgtggagtc aaagacaaaa cccttcaccc tccccattct
1501 gactatctct gaaatgtcca attctaggtt tccagtgccg attgattctc tgcacaccag
1561 cccaaccgag aatattgttg tccagtgcca aaatgggcgc gtcactcttg atggtgagtt
1621 gatgggcacc acccaactct tacctagtca aatctgtgct tttaggggcg tgctcaccag
1681 atcaacaagc agggccagtg accaggccga cgcagcaact cctaggttgt ttaattatta
1741 ttggcacata caattggata atctaaatgg aactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag acttccgggg caaagtcttt ggcgtggcca gccagagaaa
1861 tcccgacagc acaaccagag cacatgaggc aaaggtagac acgacagctg gtcgtttcac
1921 cccaaaatta ggctcattag agatatccac tgaatctgat gactttgatc aaaaccaacc
1981 aacaagattc accccagttg gcattggggt tgatcatgag gcagactttc aacaatggtc
2041 tttacccgac tattctggtc agttcaccca caacatgaac ttagccccag ctgttgctcc
2101 taacttccct ggtgagcagc tccttttctt ccgctcacag ttaccatcct ctggtgggcg
2161 atccaacggg attctagatt gcctggttcc ccaagaatgg gttcagcact tctatcaaga
2221 atcggccccc gcccaaactc aagtggccct ggtcaggtat gtcaaccctg acactggtag
2281 agtattattt gaggccaagc tgcacaaatt aggtttcatg actatagcta agaatggtga
2341 ctctccagta actgtccctc caaatggata ttttaggttt gaatcttggg tgaacccctt
2401 ttatacactt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gcttttatag caggattggc tggtgatata ttcacaaata ctgtaggatc tttggttaat
2521 gcaggggcca atgccattaa tcaaaaagtt gattttgaaa ataacaaata tttacaaaat
2581 gcctccttta atcatgataa ggaaatgtta aacgcacaaa ttgaggcaac aaagaagtta
2641 caggctgata tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccctact
2701 gatgcagccc gcggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg
2761 aggtactggg caccaaatgc cacctccaca acctcgatgt cgggtggctt cacaaatcag
2821 gttgtgcaca gtaccacgcc aaattttaaa acgaaccagg ctcccaaatc cacacccagc
2881 agtgggtctt cagtgaggtc aaactcaacc caaatcacta gcctgagctc acactcgtcc
2941 gggtcgtctc gatccagcgg gtctacagtt gttagctcat taccatcctc taacaggact
3001 agggactggg tcaaccaaca aaactttaat ttggaaccac acatgcctgg atctcttagg
3061 acagcttttg tcactccacc atctagtaca gcctctagtt caggcacggt ctcaaccgtg
3121 cccaaaaatg ttttggactc ctggacatct gcgttcaata cgcgcagaca accgctattc
3181 gcacaccttc gtagaagggg ggagtcaaat gtttagtgaa aagattattt taaaatttga
3241 tttaaattgg atttgatttg gaatctttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//