Typing tool
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Typing tool
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Complete norovirus genomes
| KF920739 | GII.16 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6704
ORF3: 6704..7501
LOCUS KF920739 7580 bp RNA linear VRL 22-APR-2019
DEFINITION Norovirus GII strain
Hu/GII.P16-GII.16/RUS/Novosibirsk/Nsk-N4740/2012, complete genome.
ACCESSION KF920739
VERSION KF920739.4
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7580)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 7580)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 7580)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 4 (bases 1 to 7580)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 22, 2019 this sequence version replaced KF920739.3.
FEATURES Location/Qualifiers
source 1..7580
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P16-GII.16/RUS/Novosibirsk/Nsk-N4740/2012"
/isolate="Hu/GII.16/Novosibirsk/Nsk-N4740/2012/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 4 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="22-Aug-2012"
/note="genotype: GII.P16/GII.16"
5'UTR 1..4
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZL94863.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNSQRPPRPPTPELVKRVPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPSLDQNESEAKEEV
PKPEDDEFIISSRDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVSIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASRANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKVSKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 5..997
/gene="ORF1"
/product="p48"
mat_peptide 998..2095
/gene="ORF1"
/product="NTPase"
mat_peptide 2096..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 5082..6704
/gene="ORF2"
CDS 5082..6704
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AZL94862.2"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNESRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDAMYTSPNDTIVVQPQNGRATIDGELLGTT
QLIPSGICSFRGRITAHLQDDSHLWSVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VISQRDTGSNNPANRSHDAVVPTYSPKFTPKLGSIQIGTWDTNDLQNQPVKFTPVGLN
EIGDDKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGHGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVV
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6704..7501
/gene="ORF3"
CDS 6704..7501
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QCD16859.1"
/translation="MAGAFIAGLAGDIVTNSVGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMISIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHNTLASVPRSSSTVSSSSTRST
VITSSSAAPSTRSSITRNSPRNTSQSVSSVSSRTSDWVQNQNRMLEPYLRGSLQTAFV
SPSSSKASSNGTVSTVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA"
3'UTR 7502..7580
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agcctgcccc gagggacaac tcacaaaggc ccccaagacc
181 accaactccc gagttggtta agagggtacc ccctccccca cctaatggtg aagaagaaga
241 gccagtcatt aggtatgagg ttaagagtgg gatctctggc ctgcccgagc tcacaacagt
301 tccccaaccg gatgtggcca acacggcatt cagtgtcccg ccgctgagct tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta
601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtattagacc tcaatgactc
661 atggcttaac aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaag cccctgccca ctatggatga ctccaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctctgata ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg gagactacga gctgcaaggg ccagaagacc tcgccgttga
1021 gctcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta
1141 tggcttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgttctg gatcttgagg caatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 agacatggag gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggct aggtcactag tccacagggc
1441 caaggaagag ttatctagca ggataagacc agtagttgtt atgatatctg gcaaaccagg
1501 gataggcaaa actcatttgg ccagggaggt ggcaagaaaa gtggcatcca ctctcacagg
1561 ggatcaaaga gtcgggctca taccaagaaa cggtgtggac cattgggatg catacaaagg
1621 tgagagggtc gtgctgtggg atgactatgg catgagcaac cccattcatg atgctctgcg
1681 catacaagaa ttggctgaca cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtatgccga
1861 tgcaccagaa gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgccttcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga
1981 caagaatggc aacaccccac atgggaaagg agtgatgaag accctcacca ctggttccct
2041 gattgcccgt gcatcaggct tattgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagtcacc accttcaatt tcgaccgtaa cagaatcacc gcattcagac aattggctgc
2161 agaaaacaag tatgggttgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggtcaagaat acctctgtgc agaccaacaa cgagttggcc ggagccctgc atcacctcaa
2401 acatgcccga atcaggtact atgtcaagtg tgtgcaagaa gcagtctact ctatcataca
2461 aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccatcattag accaaaatga atcagaggct aaggaagagg tccccaagcc
2581 agaagatgac gagttcatca tatcttctag ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaagggct tgagcgatga
2701 ggaatatgat gagtacaaga ggataagaga agagagaaac gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaagagg aggtcaaaat ccgtcagaga atcttccgtc ccaccaggaa
2881 acaaaggaag gaagagaggg ccacactggg gctagtaact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaattggact ttgaggcccc cccaagcata tggtctagga ttgtgagttt
3061 tggttctggt tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ctccatcaaa caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaactact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggg gtgcacacag cagcagcccg tggcggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc
3601 gcccattcta ggccctgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacaca cctcttccac cagggacata tgagcctgcc tatctcggtg gccgtgaccc
3721 ccgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagctga aaccattcac
3781 tgagcccagg ggtaaacctc caaaaccaag tgtgttggaa gcagccaaac aaaccatcat
3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccccaccat gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gtaaattggc agaccaagca tcaagagcaa atctaatgtt
4021 tgaggaaggg aaacacatga caccagtgta cacagcagcc ctcaaggacg agctggtcaa
4081 gactgacaaa gtttatggaa agatcaagaa gagactgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaaag cacactgcat
4201 atcacttcca gtccgagttg gtatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tataagtacc actatgatgc agactattcc cgctgggatt caacacaaca
4321 gagggcagta ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacagata gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa
4441 aatttcaata aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat
4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtgcaggca aattccatgt tttcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggac cctgaaaagt taaccaccaa attgaaggag tacggcctaa aaccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ctgaacggac tcactttcct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagctcaat
4801 attgaggcag atgtactgga ctagagggcc aaatcatgaa gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg
4921 accctctttc tacagcaaag tcagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggatttttac gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgagtg
5101 acgccgctcc atctaatgat ggtgcagccg gtctcgtacc agaggttaac aacgagacga
5161 tggcacttga accagttgcg ggagcttcaa tcgccgcccc cttaactggt caaaacaatg
5221 taatagaccc ctggattaga ttaaattttg tacaagcccc aaatggtgag ttcacggttt
5281 ccccccgaaa ctcacctggt gaaattctgt taaatttgga gttagggcct gaattgaatc
5341 catatttagc tcatttggca agaatgtata atggatatgc aggtggggtc gaggtgcagg
5401 tactgcttgc tggaaatgcg tttacagcgg gcaaactagt atttgcagca gtcccccccc
5461 atttcccagt ggacaatttg agccccggcc aaatcactat gttcccccat gtgattattg
5521 atgttagaac ccttgaacct gttttgttac cattacctga tgtaaggaat aatttctttc
5581 attataatca acagaatgaa tctcgcatga gacttattgc catgctttat acccctctta
5641 gatctaatgg ttcaggcgat gatgtcttca ctgtgtcttg tagggtttta accagaccat
5701 cccctgattt tgattttaat tatttggtcc ctccaacagt tgaatctaaa actaaaccct
5761 tctcagtccc agtgctgacc ctcaatgagc tgaccaactc ccgttttcct gtcccgattg
5821 atgccatgta cactagcccc aatgacacaa ttgtggtcca acctcaaaat gggagagcaa
5881 ccattgacgg cgaattgctt ggcacaactc aactcatccc cagtggtatc tgctcattta
5941 gaggaagaat tacagcacat ctgcaagatg acagtcactt gtggagcgtc caagtcacca
6001 atctgaatgg cacccctttt gatccaacag atgatgtgcc cgctccattg ggtatgccag
6061 acttttctgg acaaatattt ggggtgatca gccaaaggga tacaggtagt aacaaccccg
6121 caaacagatc ccatgatgct gtggttccaa cctacagtcc caaattcact cccaaactcg
6181 gctcaatcca aattggaacg tgggatacca atgatctaca aaaccagcct gttaaattca
6241 cgcccgttgg cctcaatgaa attggagatg acaaacattt cgaccaatgg gtgttaccaa
6301 attattctgg tgccctagga ctcaacatgc acctggctcc tgctgtgtcc ccacttttcc
6361 ctggagagag attgcttttc tttagatcat acatacccct aaaaggtggc catggaaacc
6421 catacattga ttgccttgtg ccacaagagt ggatacaaca tttctatcaa gaatcagccc
6481 cagcacaatc ctcggtggct ctgctgagat atgtgaaccc agacacaggg cgcaccctat
6541 ttgaggccaa attgcataag gaaggattca ttactgttgc tagcacagaa aacagacctg
6601 tagttgtccc cccaaatggc tatttcagat ttgattcttg ggtaaaccaa ttttactcac
6661 tcgcccccat gggaactggc aatgggcgca gaaggatgca gtaatggctg gagcttttat
6721 agcaggactt gccggtgaca tcgtcaccaa tagtgttggc tcacttgtga acgccggagc
6781 caatgctata aaccaaaaag ttgattttga aaacaacaaa cagctacaac aggcttcctt
6841 taaccatgat aaagagatgc tgcaagccca aatccaagcc accaagcagt tgcaggctga
6901 catgatttca atcagacaag gggttttgac cgcgggcggc ttctccccca ctgatgctgc
6961 aaggggtgca gtcaacgcac caatgaccca ggtgttggac tggaatggaa ctagatactg
7021 ggcccctggg gcctcaagga ccaccagctt ttctggtggg ttcaccaaca ccacccgtgc
7081 cagaacagtt gaaccaccca aaagttcccc ccctgctcac aatactttag cttctgtccc
7141 taggtctagt tctactgttt catcttcttc tactcgttcg acagtaatta ctagttcttc
7201 cgctgcccct tctactaggt cttctattac tagaaattca ccccgcaata cttctcaatc
7261 tgtctcttcc gtttcttctc gcactagtga ttgggtacaa aatcaaaaca gaatgctgga
7321 gccatatctg aggggatctc tgcaaacagc ctttgtgtca ccgtcctcca gtaaggcctc
7381 tagtaatggc actgtctcaa ctgtgccaaa agaaattttg gactcctgga catctgcgtt
7441 caacacccgc agacagccgc ttttcgcaca cctccgccgg aggggggagt cacaagctta
7501 gtgaaaagac tttgattttc ctttttcttt ctttcttttt attgaaaatt ttgtctttta
7561 aaaaaaaaaa aaaaaaaaaa
//