Typing tool
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Typing tool
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Complete norovirus genomes
| KF895859 | GII.3 | |
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| GII.P12 |
ORF1: 1..819
ORF2: 800..2446
ORF3: 2446..3207
LOCUS KF895859 3292 bp RNA linear VRL 26-JUN-2019
DEFINITION Norovirus GII strain Hu/GII.P12-GII.3/RUS/Krasnoyarsk/K12-32/2012
ORF1 gene, partial cds; and ORF2 and ORF3 genes, complete cds.
ACCESSION KF895859
VERSION KF895859.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3292)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 2 (bases 1 to 3292)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3292)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Dec 14, 2018 this sequence version replaced KF895859.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3292
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P12-GII.3/RUS/Krasnoyarsk/K12-32/2012"
/isolation_source="feces"
/host="Homo sapiens; age: 1 Y"
/db_xref="taxon:122929"
/country="Russia: Krasnoyarsk"
/collection_date="12-Dec-2012"
/note="genotype: GII.P12/GII.3"
gene <1..819
/gene="ORF1"
CDS <1..819
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AIA97006.2"
/translation="YDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSP
SVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIVQANSLFSF
YGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRD
PAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYS
KISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 800..2446
/gene="ORF2"
CDS 800..2446
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX14812.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQSETTTPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 2446..3207
/gene="ORF3"
CDS 2446..3207
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX14813.2"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTSSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSGT
VSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 3208..3259
ORIGIN
1 tatgatgcag attactcccg gtgggattca acacaacaaa gagccgtgtt ggcagcagcc
61 ttagaaatca tggtcaagtt ctccccagag ccgcacctgg cccaaaaggt tgcagaagac
121 cttctttctc ccagcgtgat ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc
181 ccctccggag taccctgcac ctcccaatgg aattccatcg cccactggct cctcactctc
241 tgtgcactct ccgaggttac aaacctgtcc cctgacattg ttcaggccaa ctctctcttt
301 tctttctacg gtgatgatga aattgtgagt acagacataa aattggaccc agaaaaactg
361 acagcaaaac tcaaggaata cgggttgaaa ccgacccgcc ctgacaagac tgaagggcct
421 cttgtcatct ccgaagacct gaatggccta accttcctgc ggaggaccgt gactcgcgac
481 ccagcaggct ggtttgggaa gttggaacag agctcaatac tcagacaaat gtactggact
541 aggggcccca accatgaaga tccatctgaa acaatgatac cacactccca gaggcccata
601 caattgatgt ctttgctggg tgaggcagca ctccacggcc cagcattcta cagcaaaatc
661 agtaaactgg tcattgcaga gttgaaggaa ggtggcatgg atttttacgt gccaagacaa
721 gagccaatgt tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat
781 ctggctccca gttttgtgaa tgaagatggc gtcgaatgac gccactccat ctaatgatgg
841 tgccgctggc ctcgtcccag agatcaacaa tgaggcaatg gcgctagatc cagtggcggg
901 tgcagcgata gcagcacccc ttactggcca gcaaaatata attgatccct ggattatgaa
961 taattttgtg caagcacctg gtggtgagtt cacagtgtct cctaggaatt cccctggtga
1021 agtgctcctc aatttggaat tgggcccaga aataaacccc tatctggccc atcttgctag
1081 aatgtataat ggttatgcag gtgggtttga agtgcaggta gtcctagctg gaaatgcgtt
1141 tacagcagga aagataatct ttgcagctat accccctaac ttcccaattg acaatctaag
1201 tgcagcacag atcacaatgt gcccacatgt aattgtggat gtcagacagt tggaaccggt
1261 caaccttccg atgcctgacg ttcgcaataa cttcttccac tacaaccaag ggtctgattc
1321 gagattgcgc ttgattgcaa tgctgtacac acctctcagg gcaaataatt ctggggatga
1381 tgttttcact gtgtcttgta gagtgctgac taggcctagc cctgactttt catttaactt
1441 ccttgtgcca cccactgtgg agtcaaagac aaaacccttc accctcccta ttctgactat
1501 ctctgaaatg tctaattcta ggtttccagt gccgattgat tctctgcata ccagcccaac
1561 tgagaatatt gttgtccagt gccaaaatgg acgcgtcact cttgatggcg agttgatggg
1621 caccacccag ctcttaccta gtcaaatctg tgctttcagg ggcgtgctca ccagatcaac
1681 aagcagggcc agtgaccagt ccgaaacaac aacccctaga ttgtttaatt attattggca
1741 catacaattg gataatctaa atgggactcc ttatgatcct gcagaagaca taccaggccc
1801 cctggggaca ccagatttcc ggggcaaagt ctttggcgtg gccagccaaa gaaaccccga
1861 cagtacaact agagcacatg aagcgaaggt ggacacaaca gctggtcgct tcaccccaaa
1921 actaggctca ttagagatat ccactgaatc tgatgacttt gaccaaaacc aaccaacaag
1981 attcacccca gttggcattg gggttgacca cgaggcagac ttccaacaat ggtccttacc
2041 cgactactct ggccagttca ctcacaacat gaacttagcc ccagctgttg ctcccaactt
2101 ccctggtgag cagctccttt tcttccgctc acagttacca tcttctggtg ggcggtctaa
2161 tgggattcta gactgcctgg tcccccaaga atgggttcag cacttctacc aagaatcagc
2221 ccccgcccaa acccaggtgg ctctggttag atatgtcaac cctgacactg gtagagtgtt
2281 gtttgaggcc aagttgcaca aattaggttt catgactata gctaagaatg gtgactctcc
2341 aataactgtc cccccaaatg gatactttag gtttgaatct tgggtgaacc cattttatac
2401 acttgccccc atgggaactg ggaatgggcg tagaagggtt caataatggc tggagctttt
2461 atagcaggat tagctggtga tatattcaca aacactgtag gatctctagt taatgcaggg
2521 gctaatgcca ttaatcaaaa agttgatttt gaaaataata aatatttgca aaatgcttcc
2581 ttcaatcatg ataaggaaat gttaaatgca caaattgagg caacaaagag gttacaggct
2641 gacatgattg ctatcaaaca gggggttttg accgctggcg gcttttcccc cactgatgca
2701 gctcgcgggg caattaatgc ccccatgaca aaagtcctag attggaatgg aacaaggtac
2761 tgggcaccaa gtgccacctc tacaacctcg atgtcgggtg gcttcacaaa ccaggctgtg
2821 cacagaacca cgccaaattt taaaacgaac caggccccca aatccacatc cagcagtggg
2881 tcttcagtga ggtcactctc aacccaagtc actagtctga gctcacactc gtccgggtcg
2941 tctcgatcca gcgggtctac agttagctca ttaccatcct ctaacaggac tagggactgg
3001 gtcaatcaac aaaatttcaa tttggaacca cacatgcctg ggtcacttag gacagctttt
3061 gtcactccac catctagtac agcctctagt tcaggcactg tctcaaccgt gcccaaaaat
3121 gttttggact cctggacatc tgcgtttaac acgcgcagac agccgctatt cgcacacctt
3181 cgtagaaggg gggagtcaaa tgtttagtga aaaggttatt ttaaatttga tttaaattgg
3241 atttgatttg aaatctttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//