Typing tool
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Typing tool
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Complete norovirus genomes
| KF895848 | GII.3 | |
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| GII.P12 |
ORF1: 1..800
ORF2: 781..2427
ORF3: 2427..3188
LOCUS KF895848 3273 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus GII strain Hu/GII.P12-GII.3/RUS/Smolensk/S12-106/2012
nonstructural polyprotein, RNA-dependent RNA polymerase region,
(ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and
minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION KF895848
VERSION KF895848.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3273)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 2 (bases 1 to 3273)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3273)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Dec 14, 2018 this sequence version replaced KF895848.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3273
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P12-GII.3/RUS/Smolensk/S12-106/2012"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 3 months"
/db_xref="taxon:122929"
/country="Russia: Smolensk"
/collection_date="24-Dec-2012"
/note="genotype: GII.P12/GII.3"
gene <1..800
/gene="ORF1"
CDS <1..800
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AIA96995.2"
/translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD
FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV
STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK
LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI
AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..797
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 781..2427
/gene="ORF2"
CDS 781..2427
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX14806.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTTTPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEVDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 2427..3188
/gene="ORF3"
CDS 2427..3188
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX14807.2"
/translation="MAGAFMAGLAGDIFTNIVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDEEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTSSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASTGT
VSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 3189..3240
ORIGIN
1 ggtgggattc aacacaacaa agagccgtgt tggcagcagc cttagaaatc atggtcaagt
61 tctccccaga gccgcacctg gcccaaaagg ttgcagaaga ccttctttct cccagcgtga
121 tggacgtggg tgatttcaaa atatcaatca atgagggtct cccctccgga gtgccctgca
181 cctcccaatg gaattccatc gcccactggc tcctcactct ctgtgcactc tccgaggtta
241 caaacctgtc ccctgacatt attcaggcca actctctctt ttctttctac ggtgatgatg
301 aaattgtgag tacagacata aaattggacc cagaaaaact gacagcaaaa ctcaaggaat
361 acgggttgaa accgacccgc cctgacaaga ctgaagggcc tcttgtcatc tctgaagacc
421 tgaatggcct aaccttcctg cggaggaccg tgactcgcga cccagcaggc tggtttggga
481 agttggaaca gagctcaata ctcagacaaa tgtactggac taggggcccc aaccatgaag
541 atccatctga aacaatgata ccacactccc agaggcccat acaattgatg tctttgctgg
601 gtgaggcagc actccacggc ccagcattct acagcaaaat cagtaaactg gtcattgcag
661 agttgaagga aggtggcatg gatttttacg tgccaagaca agagccaatg ttcagatgga
721 tgagattctc ggatctgagc acgtgggagg gcgatcgcaa tctggctccc agttttgtga
781 atgaagatgg cgtcgaatga cgccactcca tctaatgatg gtgccgccgg cctcgtccca
841 gagatcaaca atgaggcaat ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc
901 ctcactggcc agcaaaatat aattgatccc tggattatga ataattttgt gcaagcacct
961 ggtggtgagt tcacagtgtc tcctaggaat tcccctggtg aagtgctcct caatttggaa
1021 ttgggcccag aaataaaccc ctatctggcc catcttgcta gaatgtataa tggttatgca
1081 ggtgggtttg aagtgcaggt agtcctagct ggaaatgcgt ttacagcagg aaagataatc
1141 tttgcagcta taccccctaa cttcccaatt gacaatctaa gtgcagcaca gatcacaatg
1201 tgcccacatg taattgtgga tgtcagacag ttggaaccgg tcaaccttcc gatgcctgac
1261 gttcgcaata acttcttcca ctacaaccaa gggtctgatt cgagattgcg cttgattgca
1321 atgctgtaca cacctctcag ggcaaataat tctggggatg atgttttcac tgtgtcttgt
1381 agagtgctga ctaggcctag ccctgacttt tcatttaact tccttgtgcc acccactgtg
1441 gagtcaaaga caaaaccctt caccctccct attctgacta tctctgaaat gtccaattct
1501 aggtttccag tgccgattga ttctctgcat accagcccaa ctgagaatat tgttgtccag
1561 tgccaaaatg gacgcgtcac tcttgatggt gagttgatgg gcaccaccca gctcttacct
1621 agtcaaatct gtgctttcag gggcgtgctc accagatcaa caagcagggc cagtgaccag
1681 gccgacacaa caacccctag attgtttaat tattattggc acatacaatt ggataatcta
1741 aatgggactc cttatgatcc tgcagaagac ataccaggcc ccctggggac accagatttc
1801 cggggcaaag tctttggcgt ggccagccaa agaaaccccg acagtacaac tagagcacat
1861 gaagcgaagg tggacacaac agctggtcgc ttcaccccaa aactaggctc attagagata
1921 tccactgaat ctggtgactt tgaccaaaac caaccaacaa gattcacccc agttggcatt
1981 ggggttgacc acgaggtaga cttccaacaa tggtccttac ccgactactc tggccagttc
2041 actcacaaca tgaacttagc cccagctgtt gctcccaact tccctggtga gcagctcctt
2101 ttcttccgct cacagttacc atcttctggt gggcggtcca atgggattct agactgcctg
2161 gtcccccaag aatgggttca gcacttctac caagaatcag cccccgccca aacccaggtg
2221 gctctggtta gatatgtcaa ccctgacact ggtagagtgt tgtttgaggc caagctgcac
2281 aaattaggtt tcatgactat agctaagaat ggtgactctc caataactgt ccccccaaat
2341 ggatacttta ggtttgaatc ttgggtgaac ccattttata cacttgcccc catgggaact
2401 gggaatgggc gtagaagggt tcaataatgg ctggagcatt tatggcagga ttagctggtg
2461 atatattcac aaacattgta ggatctctgg ttaatgcagg ggctaatgcc attaatcaaa
2521 aagttgattt tgaaaataat aaatatttgc aaaatgcttc cttcaatcat gatgaggaaa
2581 tgttaaatgc acagattgag gcaacaaaga ggttacaggc tgacatgatt gctatcaaac
2641 agggggtttt gaccgctggc ggcttttccc ccactgatgc agctcgcggg gcaattaatg
2701 cccccatgac aaaagtccta gattggaatg gaacaaggta ctgggcacca agtgccacct
2761 ctacaacctc aatgtcgggt ggcttcacaa accaggctgt gcacagaacc acgccaaatt
2821 ttaaaacgaa ccaggccccc aagtccacat ccagcagtgg gtcttcagtg aggtcactct
2881 caacccaagt tactagtctg agctcacact cgtccgggtc gtctcgatcc agcgggtcta
2941 cagttgttag ctcattacca tcctctaaca ggactaggga ctgggtcaat caacaaaatt
3001 tcaatttgga accacacatg cctgggtcac ttaggacagc ttttgtcact ccaccatcta
3061 gtacagcctc tacaggcact gtctcaaccg tgcccaaaaa tgttttggac tcctggacat
3121 ctgcgtttaa cacgcgcaga cagccgctat tcgcacacct tcgtagaagg ggggagtcaa
3181 atgtttagtg aaaaggttat tttaaatttg atttaaattg gatttgattt ggaatctttt
3241 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//