Typing tool
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Typing tool
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Complete norovirus genomes
| KF895841 | GII.3 | |
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| GII.P16 |
ORF1: 4..5100
ORF2: 5081..6727
ORF3: 6727..7491
LOCUS KF895841 7551 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus GII isolate Hu/GII.P16-GII.3/Smolensk/S12-31/2012/RUS,
complete genome.
ACCESSION KF895841
VERSION KF895841.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7551)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 2 (bases 1 to 7551)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2013) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 7551)
AUTHORS Zhirakovskaya,E., Tikunov,A. and Shlyakhtun,V.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2015) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Sep 16, 2015 this sequence version replaced KF895841.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7551
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16-GII.3/Smolensk/S12-31/2012/RUS"
/isolation_source="fecal sample"
/host="Homo sapiens; sex: M"
/db_xref="taxon:122929"
/country="Russia: Smolensk"
/collection_date="29-Mar-2012"
/note="genotype: GII.P16-GII.3"
gene 4..5100
/gene="POL"
CDS 4..5100
/gene="POL"
/note="ORF1; encodes p48, NTPase, p22, VPg, 3CLpro, RdRp"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ALE30635.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPVPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKSDFSHIRLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVVIKRCQIIYGGSTYDLESDGKGKVLVEKVRNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEV
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERTTLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5081..6727
/gene="VP1"
CDS 5081..6727
/gene="VP1"
/note="major capsid protein; ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="AIA96988.2"
/translation="MKMASNDAAPSNDGAAGLVPEISNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEILLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDHADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEMSTESDDFDQNQP
TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6727..7491
/gene="VP2"
CDS 6727..7491
/gene="VP2"
/note="minor capsid protein; ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="ALE30636.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPITKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRATPNFKTNQAPKSTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD
TVSTVPKSVLDSWTSAFNTHRQPLFAHLRKRGESNV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac
61 aaggaaaaat cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc
121 ctcggggccc ggcccaaaca gcctgtcccg agggacaact cacaaaagcc cccaagacca
181 ccaactcccg agttggttaa gaggataccc cctcccccac ctaatggtga agaagaagaa
241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tgcccgagct cacaacagtc
301 ccccaaccgg acgtggccaa cacggcattc agtgttccac cgctgagctt gagagaaaac
361 agggaggcca aggaaccgct gacaggggca atattagaga tgtgggatgg agagatatac
421 cactatggcc tgtacgtgga gaagggctta gtgttgggtg tgcacaaacc acctgcagcc
481 ataagcatgg caaaagtgga gctgacgccg ttgtcattgt actggcgtgt ggtctacacc
541 ccccagtacc tcatctcccc tgaaactctc aggaggctca acggagaggc attcccttac
601 accgcctttg acaacaattg ctatgccttt tgctgttggg tattagacct caatgactca
661 tggcttaaca ggaggatggt gcaaagaaca acaggcttct tcaggcctta ccaagagtgg
721 aacagaaaac ccctgcctac tatggatgat tccaaaatca agaaggtggc aaacatattc
781 ctgtgttcat tgtccacgtt gttcaccaga cccataaaag acctcatagg aaaaattaaa
841 ccattaaaca tcttgaacat cctggcaacg tgtgactgga cattcgccgg aatagtggag
901 tctttgatat tactcgctga actctttgga gttttctgga cacccccaga tgtgtctgct
961 atgattgctc ccttacttgg agactacgag ttgcaagggc cagaagacct cgccgttgag
1021 ctcgtacctg tggtaatggg agggattggt ttggtgttgg gattcaccaa agagaaaatt
1081 ggcaaaatgt tgtcctcagc agcatcaacg ctcagggctt gtaaagatct tggtgcctat
1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga agaggccaat
1201 gagctagcca tggtgagagc tatagaggat gctgtactgg atcttgaggc aatagaaaat
1261 aaccacatga caactctgtt gaaagacaaa gacagcctag caacctacat gaaaaccctt
1321 gacatggagg aggaaaaagc cagaagattg tccacaaaat ctgcatcccc tgacatagtt
1381 gggacgatca acgccctgct ggctcgaata gcagcggcta ggtcactagt ccacagggcc
1441 aaggaggagt tatctagcag gatgagacca gtagttgtta tgatatctgg caaaccaggg
1501 ataggcaaaa ctcatttggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg
1561 gatcaaagag tcgggctcat accgagaaat ggtgtggacc actgggatgc atacaaaggt
1621 gagagagtcg tgctgtggga cgactatggc atgagcaacc ccattcatga tgctctgcgc
1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaataag
1741 ggaaaagttt ttgacagtga agttataata attacaacaa accttgccaa tccagctcca
1801 cttgattatg tcaactttga ggcctgttcc aggagaattg acttcctggt gtacgccgag
1861 gcaccagaag tagaaaaagc aaaacgagac tttcctggtc aaccagatat gtggaaggac
1921 gccttcaagt cggacttttc acatatcagg ttgcaactcg cacctcaggg cggctttgac
1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcaccac cggttccctg
2041 attgcccgtg catcaggctt actgcatgag aggatggatg aatttgaact ccaaggcccc
2101 acagtcacca ccttcaattt cgaccggaac agaatcaccg cattcagaca attggctgca
2161 gaaaacaagt atgggttggt agacaccatg agagttggca atcaattaaa aggggtgaaa
2221 accatggaag aactcaaaca agcaatcaaa aatgtggtca tcaagaggtg ccagatcatc
2281 tacggtggct ccacgtatga ccttgagtct gatggcaagg gcaaagtttt ggtggaaaag
2341 gtcaggaaca cctctgtaca gaccaacaac gagttggccg gagccctgca tcacctcaaa
2401 catgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctactc tatcatacaa
2461 attgccggcg ctgcgtttgt caccacacgc attgcacgcc gcatgaacat acaagagctt
2521 tggtcgaagc caccattaga ccaaaatgaa tcagaggcta aggaagaggt ccccaagtca
2581 gaagatgacg agttcatcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa
2641 aacaaaactg gccgtggcaa gaaacacact gcattctcta gcaagggctt gagcgatgag
2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag
2761 tatcttcaag acagagacag gtactatgag gagctcgcca tcgccaaggc cacggaagaa
2821 gatttctgtg aggaggagga ggtcaaaatc cgtcagagga ttttccgtcc caccaggaaa
2881 caaagaaagg aagagaggac cacactaggg ctagtaactg gttcagaaat cagaaaaaga
2941 aaccctgatg acttcaaacc taaagggaaa ctgtgggccg atgacaacag aagtgttgac
3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt
3061 ggttctggct ggggcttctg ggtatcgcca agcctgttca taacatcaac tcatgtaatc
3121 cctgcaggca taacagaggc atttggggtc cccatcaaac aaatccaggt ccacaaatca
3181 ggtgaatttt gtcggttcag attcccaaaa ccaattagac cagatgtgac aggaatgatt
3241 ttggaggaag gcgcgcctga gggcaccgtg gcaaccgtgc tcatcaaacg ccctaccgga
3301 gagctcatgc cccttgcagc cagaatgggg acacacgcaa ccatgaaaat tcaaggccgc
3361 atggttggcg gacagatggg tatgttgctc actggttcaa atgctaaagg aatggatttg
3421 ggaacaactc ctggtgattg tggctgtccc tacatctaca aaaggggcaa tgactatata
3481 gtcattgggg tgcacacagc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag
3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca
3601 cccattctag gccctggagg ggcaccaaaa ttgagcacca aaaccaaatt ttggaggtca
3661 tcgaacacgc ctcttccacc agggacatat gagcctgcct acctcggtgg ccgtgacccg
3721 cgtgtcaagg gtgggccctc cttgcagcag gtaatgagag accagttgaa gccattcact
3781 gagcccaggg gtaaacctcc aagaccaagt gtgttggagg cagccaaaca aaccatcatc
3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgct
3901 tcacttgaca aaaccacctc cagcgggcat ccccaccacg tccgaaagaa tgaattctgg
3961 aatggtgaga ccttcacagg taaattggca gaccaagcat caaaagcaaa tctaatgttt
4021 gaggaaggga aacacatgac accagtgtac acagcagccc tcaaggacga gctggtcaag
4081 actgacaaag tctatggtaa gatcaagaag agactgctct ggggttctga cttgtccacc
4141 atgatccggt gcgccaggtc ctttggtggg ctcatggatg agatgaaggc tcactgcata
4201 tcactcccag tccgagttgg catgaacatg aatgaagatg gcccaataat atttgagaag
4261 cactccagat acaagtacca ctatgatgca gactactccc gctgggattc aacacaacag
4321 agggcagtat tagcagcagc cttggaaatc atggtcaggt tctctgcaga gccacaattg
4381 gcacagatag tcgctgagga tctgttggcc cccagtgtgg tggatgtagg agactttaaa
4441 atttcaataa atgaagggct cccctctggt gtaccatgca cttctcaatg gaattccatc
4501 gcacactggc tgctaaccct ctgtgccttg tctgaagtca ccaagctgtc ccctgacatt
4561 gtacaggcaa attctatgtt ctcattttac ggtgatgacg agattgtcag caccgatata
4621 aaattggacc ctgaaaagtt aaccaccaaa ttgaaggagt acggcctgaa accaactcgc
4681 ccagacaaaa ccgagggacc cctgatcatc agtgaggatt tgaacggact cactttcctc
4741 cggaggacgg tgactcgtga cccagctggc tggtttggaa aattggacca aagttcaata
4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata
4861 ccccactctc aaagacccat acagctcatg gcactgcttg gtgaggcctc ccttcacggg
4921 ccctctttct acagcaaaat tagtaaattg gtcataactg aactcaaaga aggtgggatg
4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga
5101 cgctgctcca tctaatgatg gtgccgccgg cctcgtacca gagatcagta atgaggcaat
5161 ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc cttactggcc agcaaaacat
5221 aatagatccc tggattatga ataattttgt gcaagcacct ggtggtgagt ttacagtgtc
5281 acccaggaac tcccctggtg aaatacttct aaatttagaa ttaggcccag aaataaatcc
5341 ctatctggcg catcttgcta ggatgtacaa tggttatgca ggtgggtttg aggtgcaggt
5401 ggtcctggct ggaaatgcgt ttacagcagg aaaagtgatc tttgcagcta taccccccaa
5461 tttcccaact gacaatttga gtgcagcgca gattacaatg tgccctcatg taattgtgga
5521 tgtcaggcag ttggaaccaa tcaacctccc gatgcctgat gtccgcaaca atttctttca
5581 ttacaatcaa ggttctgatt caaggttacg cttaattgca atgttgtaca caccccttag
5641 ggcaaataat tctggagatg atgttttcac tgtgtcatgt agggtattga ctaggcccag
5701 tcctgatttc tcattcaact tcctcgtccc gcccactgtg gaatcaaaga caaaaccttt
5761 taccctccca attttgacta tctctgagat gtctaattct agatttccag tgccaattga
5821 ctctctgcac accagtccaa ctgataacat tgttgtccag tgccaaaatg ggcgcgtcac
5881 ccttgatggt gagctaatgg gcaccaccca actcttgccg agtcagatat gtgcttttag
5941 gggtgtgctc accagatcaa caagcagggc cagtgaccac gctgacacag caacccccag
6001 gctcttcaat tactactggc acatacaact agacaaccta aatgggaccc cgtatgatcc
6061 tgcagaggac ataccagctc ctctggggac accagacttt cggggcaaag tctttggcgt
6121 ggccagccag agaaaccctg acagcacaac aagggcacat gaggcaaaag tggacacaac
6181 atctggccgc ttcaccccaa aattaggctc cctagaaatg tccactgaat ctgatgactt
6241 tgatcaaaat caaccaacaa gattcacccc agttggcatt ggagttgaca atgaggcaga
6301 ctttcaacaa tggaccttac ctgactattc cggtcagttc acccacaaca tgaatctggc
6361 cccagctgtc gctcccaatt ttcccggtga acagcttctt ttcttccgct cacagctgcc
6421 atcctctggc gggcggtcca atggtattct agactgcctg gtcccccagg aatgggtcca
6481 acatttctat caggaatccg cccctgccca gacgcaggtg gctctggtca ggtatgtcaa
6541 tcctgatact ggtagggtgt tatttgaggc taagctgcat aagctaggct acatgaccat
6601 agctaagagt ggtgattctc caataactgt acccccaaat ggatacttta ggtttgaatc
6661 ttgggtgaac cccttttaca cactagcccc catgggaact gggaatgggc gtagaaggat
6721 tcaataatgg ctggagcctt tatagcagga ttggctggtg acatgctcac aaatactgta
6781 gggtctttag ttaatgcagg ggctggtgct attaatcaaa aagttgattt tgaaaataat
6841 aaatatctac aaaatgcatc ctttaatcat gataaggaga tgttaaatgc acaaattgag
6901 gcaacaaaga ggctacaggc tgacatgatt gctatcaaac aaggggtttt gaccgctggc
6961 ggtttctccc ccactgatgc agcccgtggg gctattaacg cccccataac aaaagttctg
7021 gactggagtg gaaccaggta ctgggcacca aatgccacct ccacaacttc aatgtcaggt
7081 ggctttacag gtcaagctgt acacagagct acaccaaatt ttaaaaccaa tcaagcccca
7141 aaatccacac ccagcagtgg gtcttcagtg aggtcaagct caacccaact caccaacttg
7201 agctcacact catctgggtc ttctcgatcc agcggatcca cgatggtcag ctcgttacca
7261 tcttccagta ggactagaga ctgggttaac caacagaatt tcaatttgga accacacatg
7321 cctggatctc tcaggacagc ttttgttact ccaccatcta gtacagcctc tagcttagac
7381 acggtctcaa ccgtgcccaa gagtgttttg gactcctgga catctgcgtt taacacgcac
7441 agacagccgc ttttcgcaca ccttcgtaaa aggggggagt caaatgttta gtgaaaagat
7501 tatttttaaa tttggtttgt aattggattt aaattagaat cttttaaaaa a
//