Typing tool
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Complete norovirus genomes
KF768516 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..793 ORF2: 774..2396 ORF3: 2396..2586LOCUS KF768516 2586 bp RNA linear VRL 30-JUN-2014 DEFINITION Norovirus Hu/GII.4/P57/2012/Gothenburg/Sweden RNA-dependent RNA polymerase and capsid protein genes, partial cds. ACCESSION KF768516 VERSION KF768516.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/P57/2012/Gothenburg/Sweden ORGANISM Norovirus Hu/GII.4/P57/2012/Gothenburg/Sweden Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2586) AUTHORS Nenonen,N.P., Hannoun,C., Svensson,L., Toren,K., Andersson,L.M., Westin,J. and Bergstrom,T. TITLE Norovirus GII.4 Detection in Environmental Samples from Patient Rooms during Nosocomial Outbreaks JOURNAL J. Clin. Microbiol. 52 (7), 2352-2358 (2014) PUBMED 24759712 REFERENCE 2 (bases 1 to 2586) AUTHORS Nenonen,N.P., Hannoun,C.B., Svensson,L., Andersson,L.-M., Westin,J. and Bergstrom,T. TITLE Direct Submission JOURNAL Submitted (26-OCT-2013) Infectious Diseases/Virology, University of Gothenburg, Guldhedsgatan 10B, Gothenburg 413 46, Sweden COMMENT ##Assembly-Data-START## Assembly Method :: MacVector v. 7.4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2586 /organism="Norovirus Hu/GII.4/P57/2012/Gothenburg/Sweden" /mol_type="genomic RNA" /strain="Hu/GII.4/P57/2012/Gothenburg/Sweden" /isolate="P57/6999" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1497076" /country="Sweden" /collection_date="01-May-2012" /note="genotype: GII.4" CDS <1..793 /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="AHZ13006.1" /translation="STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFT ISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVST DIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLE QSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAE LKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 774..2396 /codon_start=1 /product="minor capsid protein" /protein_id="AHZ13007.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVIHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2396..>2586 /codon_start=1 /product="minor capsid protein" /protein_id="AHZ13008.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEM" ORIGIN 1 ttcaacacaa cagagagccg tgttggcagc agctctcgaa atcatggtta aattctcccc 61 agaaccacat ttggctcagg tagtcgcgga agaccttctt tctcctagtg tggtggacgt 121 gggcgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct gcacctccca 181 atggaactcc atcgcccact ggcttctcac tctctgtgcg ctctccgaag tcacaaacct 241 atcccctgat accatacagg ctaactccct cttctctttt tatggtgatg atgaaattgt 301 tagcacagac ataaaattgg acccagagaa attgacagca aagctcagag aatatgggtt 361 aaaaccaacc cgccctgaca aaactgaagg accccttgtc atctctgaag acctgaatgg 421 cctaactttc ctgcggagga ctgtgacccg cgacccagct ggttggtttg gaaaactgga 481 gcagagttca atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccatc 541 tgaaacaatg attccacact cccaaagacc catacaattg atgtccctac tgggggaggc 601 cgctctccac ggcccagcct tttatagcaa aatcagcaag ttggtcattg cagagctaaa 661 agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt 721 ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga 781 tggcgtcgag tgacgccaac ccatctgatg ggtccacagc caacctcgtc ccagaggtca 841 acaatgaggt tatggctttg gagcccgtag ttggtgccgc tattgcggca cctgtagcgg 901 gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag 961 agtttacagt atcccctaga aacgctccag gtgaaatatt atggagcgcg cccttaggcc 1021 ctgatctgaa tccctacctt tctcatttgg ccagaatgta caatggttat gcaggtggtt 1081 ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag 1141 cagtcccacc aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc 1201 atataatagt agatgttagg caattggaac ctgtgttgat ccctttaccc gatgttagga 1261 ataatttcta ccattataat caatcaaacg accccactat caaattgata gcaatgctgt 1321 acacaccact tagggctaat aatgctgggg acgatgtctt cacagtttct tgtcgagttc 1381 tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa 1441 gaactaaacc attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc 1501 ccattccttt ggaaaagttg ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa 1561 atggcaggtg cacgactgat ggcgtgctcc taggtactac ccaactgtcc cctgtcaaca 1621 tctgcacctt cagaggggat gtcatccata tttcaggcag tcgtaactac acaatgaatt 1681 tggcctccca aaattggaac agttacgatc caacagaaga aatcccagcc cctctaggaa 1741 ctccagattt cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct 1801 cgacccgcgg ccacaaagct acagtgtaca ctgggagcgc cgacttttct ccaaaactgg 1861 gtagagttca atttgccact gacacggaca atgattttga aactaaccaa aacacaaagt 1921 tcaccccagt cggtgttatc caggatggta gtaccacccc ccgaaatgaa cctcaacaat 1981 gggtgctccc aagttactca ggcagaaaca ttcataatgt gcacctggcc cccgctgtag 2041 cccccacttt cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg 2101 ggtaccccaa catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc 2161 aggaggcagc cccagcacaa tctgatgtgg ctctgttgag atttgtgaat ccagacacag 2221 gtagggtttt gtttgagtgt aagctccata aatcgggcta tgttacagtg gctcacactg 2281 gccaacatga tttggttatt ccccccaatg gttattttag atttgattcc tgggtcaacc 2341 agttctacac acttgccccc atgggaaatg ggacggggcg tagacgtgca ttataatggc 2401 tggagctttc tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat 2461 caatgctggg gctggggcca tcaaccaaaa agttgaattt gaaaataata gaaaattgca 2521 acaagcttcc ttccaattta gtagcaacct acaacaagct tcctttcaac atgacaaaga 2581 gatgat //