Typing tool
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Typing tool
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Complete norovirus genomes
| KF768515 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..793
ORF2: 774..2396
ORF3: 2396..2511
LOCUS KF768515 2511 bp RNA linear VRL 30-JUN-2014
DEFINITION Norovirus Hu/GII.4/P56/2012/Gothenburg/Sweden RNA-dependent RNA
polymerase and capsid protein genes, partial cds.
ACCESSION KF768515
VERSION KF768515.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/P56/2012/Gothenburg/Sweden
ORGANISM Norovirus Hu/GII.4/P56/2012/Gothenburg/Sweden
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2511)
AUTHORS Nenonen,N.P., Hannoun,C., Svensson,L., Toren,K., Andersson,L.M.,
Westin,J. and Bergstrom,T.
TITLE Norovirus GII.4 Detection in Environmental Samples from Patient
Rooms during Nosocomial Outbreaks
JOURNAL J. Clin. Microbiol. 52 (7), 2352-2358 (2014)
PUBMED 24759712
REFERENCE 2 (bases 1 to 2511)
AUTHORS Nenonen,N.P., Hannoun,C.B., Svensson,L., Andersson,L.-M., Westin,J.
and Bergstrom,T.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2013) Infectious Diseases/Virology, University of
Gothenburg, Guldhedsgatan 10B, Gothenburg 413 46, Sweden
COMMENT ##Assembly-Data-START##
Assembly Method :: MacVector v. 7.4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2511
/organism="Norovirus Hu/GII.4/P56/2012/Gothenburg/Sweden"
/mol_type="genomic RNA"
/strain="Hu/GII.4/P56/2012/Gothenburg/Sweden"
/isolate="P56/6998"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1497075"
/geo_loc_name="Sweden"
/collection_date="01-May-2012"
/note="genotype: GII.4"
CDS <1..793
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AHZ13003.1"
/translation="STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFT
ISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVST
DIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLE
QSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAE
LKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 774..2396
/codon_start=1
/product="capsid protein"
/protein_id="AHZ13004.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVIHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2396..>2511
/codon_start=1
/product="minor capsid protein"
/protein_id="AHZ13005.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENN"
ORIGIN
1 ttcaacacaa cagagagccg tgttggcagc agctctcgaa atcatggtta aattctcccc
61 agaaccacat ttggctcagg tagtcgcgga agaccttctt tctcctagtg tggtggacgt
121 gggcgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct gcacctccca
181 atggaactcc atcgcccact ggcttctcac tctctgtgcg ctctccgaag tcacaaacct
241 atcccctgat accatacagg ctaactccct cttctctttt tatggtgatg atgaaattgt
301 tagcacagac ataaaattgg acccagagaa attgacagca aagctcagag aatatgggtt
361 aaaaccaacc cgccctgaca aaactgaagg accccttgtc atctctgaag acctgaatgg
421 cctaactttc ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga
481 gcagagttca atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccatc
541 tgaaacaatg attccacact cccaaagacc catacaattg atgtccctac tgggggaggc
601 cgctctccac ggcccagcct tttatagcaa aatcagcaag ttggtcattg cagagctaaa
661 agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt
721 ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga
781 tggcgtcgag tgacgccaac ccatctgatg ggtccacagc caacctcgtc ccagaggtca
841 acaatgaggt tatggctttg gagcccgtag ttggtgccgc tattgcggca cctgtagcgg
901 gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag
961 agtttacagt atcccctaga aacgctccag gtgaaatatt atggagcgcg cccttaggcc
1021 ctgatctgaa tccctacctt tctcatttgg ccagaatgta caatggttat gcaggtggtt
1081 ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag
1141 cagtcccacc aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc
1201 atataatagt agatgttagg caattggaac ctgtgttgat ccctttaccc gatgttagga
1261 ataatttcta ccattataat caatcaaacg accccactat caaattgata gcaatgctgt
1321 acacaccact tagggctaat aatgctgggg acgatgtctt cacagtttct tgtcgagttc
1381 tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa
1441 gaactaaacc attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc
1501 ccattccttt ggaaaagttg ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa
1561 atggcaggtg cacgactgat ggcgtgctcc taggtactac ccaactgtcc cctgtcaaca
1621 tctgcacctt cagaggggat gtcatccata tttcaggcag tcgtaactac acaatgaatt
1681 tggcctccca aaattggaac agttacgatc caacagaaga aatcccagcc cctctaggaa
1741 ctccagattt cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct
1801 cgacccgcgg ccacaaagct acagtgtaca ctgggagcgc cgacttttct ccaaaactgg
1861 gtagagttca atttgccact gacacagaca atgattttga aactaaccaa aacacaaagt
1921 tcaccccagt cggtgttatc caggatggta gtaccacccc ccgaaatgaa cctcaacaat
1981 gggtgctccc aagttactca ggcagaaaca ttcataatgt gcacctggcc cccgctgtag
2041 cccccacttt cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg
2101 ggtaccccaa catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc
2161 aggaggcagc cccagcacaa tctgatgtgg ctctgttgag atttgtgaat ccagacacag
2221 gtagggtttt gtttgagtgt aagctccata aatcgggcta tgttacagtg gctcacactg
2281 gccaacatga tttggttatt ccccccaatg gttattttag atttgattcc tgggtcaacc
2341 agttctacac acttgccccc atgggaaatg ggacggggcg tagacgtgca ttataatggc
2401 tggagctttc tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat
2461 caatgctggg gctggggcca tcaaccaaaa agttgaattt gaaaataata g
//