Typing tool
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Typing tool
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Complete norovirus genomes
| KF768471 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..793
ORF2: 774..2396
ORF3: 2396..2586
LOCUS KF768471 2586 bp RNA linear VRL 30-JUN-2014
DEFINITION Norovirus Hu/GII.4/P3/2012/Gothenburg/Sweden RNA-dependent RNA
polymerase and capsid protein genes, partial cds.
ACCESSION KF768471
VERSION KF768471.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/P3/2012/Gothenburg/Sweden
ORGANISM Norovirus Hu/GII.4/P3/2012/Gothenburg/Sweden
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2586)
AUTHORS Nenonen,N.P., Hannoun,C., Svensson,L., Toren,K., Andersson,L.M.,
Westin,J. and Bergstrom,T.
TITLE Norovirus GII.4 Detection in Environmental Samples from Patient
Rooms during Nosocomial Outbreaks
JOURNAL J. Clin. Microbiol. 52 (7), 2352-2358 (2014)
PUBMED 24759712
REFERENCE 2 (bases 1 to 2586)
AUTHORS Nenonen,N.P., Hannoun,C.B., Svensson,L., Andersson,L.-M., Westin,J.
and Bergstrom,T.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2013) Infectious Diseases/Virology, University of
Gothenburg, Guldhedsgatan 10B, Gothenburg 413 46, Sweden
COMMENT ##Assembly-Data-START##
Assembly Method :: MacVector v. 7.4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2586
/organism="Norovirus Hu/GII.4/P3/2012/Gothenburg/Sweden"
/mol_type="genomic RNA"
/strain="Hu/GII.4/P3/2012/Gothenburg/Sweden"
/isolate="P3/310"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1497049"
/country="Sweden"
/collection_date="08-Jan-2012"
/note="genotype: GII.4"
CDS <1..793
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AHZ12911.1"
/translation="STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFT
ISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTVQANSLFSFYGDDEIVST
DIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLE
QSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVIAE
LKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 774..2396
/codon_start=1
/product="capsid protein"
/protein_id="AHZ12912.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVSICTFRGDVTHIPGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTNNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2396..>2586
/codon_start=1
/product="minor capsid protein"
/protein_id="AHZ12910.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEM"
ORIGIN
1 ttcaacacaa cagagagccg tgttggcagc agctctcgaa atcatggtta aattctcccc
61 agaaccacat ttggctcagg tagtcgcgga agaccttctt tctcctagcg tggtagacgt
121 gggcgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct gcacctccca
181 atggaactct atcgcccact ggcttctcac tctctgtgcg ctctccgaag tcacaaacct
241 gtcccctgac accgtacagg ctaactccct cttctctttt tatggtgatg atgaaattgt
301 tagcacagac ataaaattgg acccagagaa actgacagca aagctcagag aatatgggtt
361 aaaaccaacc cgccctgaca aaactgaagg accccttgtc atctctgaag acctgaatgg
421 cctaactttc ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga
481 gcagagttca atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccatc
541 tgaaacaatg atcccacact cccaaagacc catacaattg atgtccctac tgggggaggc
601 cgctctccac ggcccatcct tctatagcaa aatcagcaag ttggtcattg cagagctaaa
661 ggaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt
721 ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga
781 tggcgtcgag tgacgccaac ccatctgatg ggtccacagc caacctcgtc ccagaggtca
841 acaatgaggt tatggctttg gagcccgtag ttggtgccgc cattgcggca cctgtagcgg
901 gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag
961 agtttacagt atcccctaga aatgctccag gtgaaatatt atggagcgcg cccttaggcc
1021 ctgatctgaa tccctacctt tcccatttgg ccagaatgta caatggttat gcaggtggtt
1081 ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag
1141 cagtcccacc aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc
1201 atataatagt agatgttagg caattggaac ctgtgttgat ccccttaccc gatgttagga
1261 ataatttcta ccattataat caatcaaatg actccaccat caaattgata gcaatgttgt
1321 acacaccact tagggctaat aatgctgggg acgatgtctt cacagtttct tgtcgagttc
1381 tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa
1441 gaactaaacc attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc
1501 ccattccttt ggaaaagttg ttcacgggcc ccagtagtgc cttcgttgtt caaccacaaa
1561 atggcaggtg cacgactgat ggcgtgctcc taggtaccac ccaactgtcc cctgtcagca
1621 tctgcacctt cagaggggat gtcacccaca ttccaggcag tcataactac acaatgaatt
1681 tggcctccca aaattggaac agttacgacc caacagaaga aatcccagcc cctctaggaa
1741 ctccagattt cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct
1801 cgacccgcgg ccacaaagct acagtgtaca ctgggagcgc cgacttttct ccaaaactgg
1861 gtagagttca atttgctact gacacaaaca atgattttga aactaaccaa aacacaaagt
1921 tcaccccagt cggtgttatc caggatggta gtaccacccc ccggaatgaa ccccaacaat
1981 gggtgctccc aagttactca ggcagaaaca ttcataatgt gcacttggcc cccgctgtag
2041 cccccacttt cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg
2101 ggtatcccaa catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc
2161 aggaggcagc cccagcacaa tctgatgtgg ctttgttaag atttgtgaat ccagacacag
2221 gtagggtttt gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg
2281 gccaacatga tttggttatc ccccccaatg gttattttag atttgattcc tgggttaatc
2341 agttctacac acttgccccc atgggaaacg ggacggggcg tagacgtgca ttataatggc
2401 cggagctttc tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat
2461 cagtgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca gaaaattgca
2521 acaagcttcc ttccaattta gtagcaatct acaacaagct tcctttcaac atgacaaaga
2581 gatgat
//