Typing tool
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Typing tool
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Complete norovirus genomes
| KF668569 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..825
ORF2: 806..2428
ORF3: 2428..3234
LOCUS KF668569 3281 bp RNA linear VRL 30-APR-2014
DEFINITION Norovirus Hu/GII.4/PA703/2012/ITA RNA-dependent RNA polymerase
(ORF1) gene, partial cds; and capsid protein (ORF2) and minor
capsid protein (ORF3) genes, complete cds.
ACCESSION KF668569
VERSION KF668569.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PA703/2012/ITA
ORGANISM Norovirus Hu/GII.4/PA703/2012/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3281)
AUTHORS Giammanco,G.M., De Grazia,S., Terio,V., Lanave,G., Catella,C.,
Bonura,F., Saporito,L., Medici,M.C., Tummolo,F., Calderaro,A.,
Banyai,K., Hansman,G. and Martella,V.
TITLE Analysis of early strains of the norovirus pandemic variant GII.4
Sydney 2012 identifies mutations in adaptive sites of the capsid
protein
JOURNAL Virology 450-451, 355-358 (2014)
PUBMED 24503099
REFERENCE 2 (bases 1 to 3281)
AUTHORS Martella,V., De Grazia,S. and Giammanco,G.
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2013) Dipartimento di Medicina Veterinaria,
Universita' degli Studi di Bari 'Aldo Moro', S.P. Casamassima Km 3,
Valenzano, Bari 70010, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3281
/organism="Norovirus Hu/GII.4/PA703/2012/ITA"
/mol_type="genomic RNA"
/strain="PA703/2012/ITA"
/isolation_source="human stools"
/host="Homo sapiens"
/db_xref="taxon:1435414"
/country="Italy"
/collection_date="01-Dec-2012"
/note="subtype: variant Sydney 2012; genotype: GII.4"
gene <1..825
/gene="ORF1"
CDS <1..825
/gene="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AHC12660.1"
/translation="YHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQVVAEDLL
SPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVT
RDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAF
YSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2428
/gene="ORF2"
CDS 806..2428
/gene="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AHC12661.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 2428..3234
/gene="ORF3"
CDS 2428..3234
/gene="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AHC12662.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAIIQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMPQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSAVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 3235..3281
ORIGIN
1 taccactatg atgcagacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca
61 gcagcactag aaatcatggt taagttctct ccagagccac acctggccca ggtagttgca
121 gaagacctcc tttcccctag cgtaatggat gtaggtgact ttcaaatatc aataagtgag
181 ggtcttccct ctggggtacc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc
241 actctttgtg cactctctga agtcacggac ctttcccctg acatcattca ggccaactcc
301 cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt ggatccagag
361 aagctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa
421 gggccccttg ttatctctga agacctggat ggcctgacat tcctccggag aactgtgacc
481 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattctcag acaaatgtac
541 tggaccaggg gtcccaacca tgaagatcca tttgaaacaa tgataccgca ctcccaaaga
601 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attttatagc
661 aaaattagca aattagtcat tacagagttg aaggaaggtg gcatggattt ttacgtgccc
721 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga
841 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt
901 tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
961 tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc
1021 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctacc tatcccattt
1081 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa
1141 cgcgttcacc gctgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg
1201 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga
1261 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattata atcaatcaaa
1321 tgaccccacc attaagttga tagcaatgtt gtacacacca cttagggcta ataatgctgg
1381 ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg attttgattt
1441 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt
1501 aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg
1561 tcccagcagt gcctttgttg tccaaccaca aaacggcagg tgcacgactg atggcgtgct
1621 cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag atgtcaccca
1681 tatcacaggt agtcgtaact acacaatgaa tttggcttct caaaattgga acaattatga
1741 cccaacagaa gaaatcccag cccctctagg aactccagac tttgtgggga agattcaagg
1801 cgtgctcacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta
1861 cactgggagt gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaga
1921 ccatgacttt gaagctaacc aaaacacaaa gttcacccca gtcggtgtca tccaagatgg
1981 tagcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcagaaa
2041 tactcataat gtgcatctgg cccccgctgt agcccccact tttccgggtg aacaacttct
2101 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggactgtct
2161 gctccctcag gaatgggtgc agtacttcta ccaagaggca gccccagcac aatctgatgt
2221 ggctctgcta aggtttgtga atccagacac aggtagggtt ttgtttgagt gtaagcttca
2281 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta ttccccccaa
2341 tggttatttt agatttgatt cctgggtcaa ccagttctac acgcttgccc ccatgggaaa
2401 tggaacgggg cgtagacgtg cagtataatg gctggagctt tctttgctgg attggcatct
2461 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcatccaa
2521 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat
2581 ctacaacagg cttcctttca acatgacaaa gagatgcccc aagcacaaat tgaggccacc
2641 aaaaagctac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc
2701 tctgagacag atgcagcccg cggggcaatt aacgccccca tgacaaaagc tttggactgg
2761 agcgggacaa ggtactgggc tcccgatgct aggactacaa catacaatgc aggccgcttt
2821 tccacccctc aaccatcggg ggcactgcca ggaagagcta atcttaggga tgctgtccct
2881 gcccggggtt cctccagtaa atcttctaac tcttctgctg ctacctctgt gtactcaaat
2941 caaactactt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcctc
3001 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt gtcacctttc
3061 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa
3121 ggcacagtct cagccgtgcc taaagaggtt ttggactcct ggactggcgc tttcaacacg
3181 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc gtaatgtgaa
3241 aagacaaaat tgattatctt tctttttctt tagtgtcttt t
//