Typing tool
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Typing tool
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Complete norovirus genomes
| KF668567 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KF668567 3278 bp RNA linear VRL 30-APR-2014
DEFINITION Norovirus Hu/GII.4/PA363/2011/ITA RNA-dependent RNA polymerase
(ORF1) gene, partial cds; and capsid protein (ORF2) and minor
capsid protein (ORF3) genes, complete cds.
ACCESSION KF668567
VERSION KF668567.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PA363/2011/ITA
ORGANISM Norovirus Hu/GII.4/PA363/2011/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3278)
AUTHORS Giammanco,G.M., De Grazia,S., Terio,V., Lanave,G., Catella,C.,
Bonura,F., Saporito,L., Medici,M.C., Tummolo,F., Calderaro,A.,
Banyai,K., Hansman,G. and Martella,V.
TITLE Analysis of early strains of the norovirus pandemic variant GII.4
Sydney 2012 identifies mutations in adaptive sites of the capsid
protein
JOURNAL Virology 450-451, 355-358 (2014)
PUBMED 24503099
REFERENCE 2 (bases 1 to 3278)
AUTHORS Martella,V., De Grazia,S. and Giammanco,G.
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2013) Dipartimento di Medicina Veterinaria,
Universita' degli Studi di Bari 'Aldo Moro', S.P. Casamassima Km 3,
Valenzano, Bari 70010, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3278
/organism="Norovirus Hu/GII.4/PA363/2011/ITA"
/mol_type="genomic RNA"
/strain="PA363/2011/ITA"
/isolation_source="human stools"
/host="Homo sapiens"
/db_xref="taxon:1435412"
/country="Italy"
/collection_date="01-Nov-2011"
/note="subtype: variant Sydney 2012; genotype: GII.4"
gene <1..822
/gene="ORF1"
CDS <1..822
/gene="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AHC12654.1"
/translation="HYDADYSRWDSTQQRDVLAVALEIMVKFSPEPHLAQIVAEDLLS
PSVMDVGDSQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFS
FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTR
DPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 803..2425
/gene="ORF2"
CDS 803..2425
/gene="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AHC12655.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVSTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPIGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 2425..3231
/gene="ORF3"
CDS 2425..3231
/gene="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AHC12656.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cactatgatg cagactattc ccggtgggac tcaacacaac aaagggatgt gctagcagta
61 gcactagaga tcatggttaa gttctctcca gaaccacacc tggcccagat agttgcagaa
121 gacctccttt cccctagcgt aatggatgta ggtgactctc aaatatcaat aagtgagggt
181 ctcccctctg gggtaccttg tacctcccag tggaattcca tcgctcactg gctcctcact
241 ctttgtgcac tctctgaagt cacggacctg tcccctgaca tcattcaggc caactccctt
301 ttctccttct atggtgatga tgagattgta agcacagaca taaagttgga cccagagaag
361 ctgacagcaa aactcaagga gtacgggctg aaaccaaccc gccccgacaa aactgaagga
421 ccccttgtta tctctgaaga cctggatggc ctgacattcc tccggagaac tgtgacccgt
481 gatccagctg gctggtttgg aaagttggaa caaagttcaa ttctcaggca aatgtactgg
541 accaggggtc ccaaccatga agatccattt gaaacaatga taccacactc ccaaagaccc
601 atacaattga tgtccttgct gggcgaggct gcactccacg gcccggcatt ttatagcaaa
661 attagcaaat tagtcattgc agagttgaag gaaggtggca tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt atggctctgg agcccgttgt
901 tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag
961 aaacaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg
1021 tgaaatacta tggagcgcgc ccttaggccc tgatctaaat ccctacctat cccatttggc
1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaattctcg cggggaacgc
1141 gttcaccgcc gggaaggtca tatttgcagc agtcccacca aattttccaa ctgaaggctt
1201 aagccccagc caggtcacta tgttccccca catagtagta gatgttaggc aactagaacc
1261 tgtgttgatt cccttacccg atgttaggaa taatttctat cattataatc aatcaaatga
1321 ccccaccatt aagttgatag caatgttgta tacaccactt agggctaata atgctgggga
1381 cgatgtctcc acagtttctt gccgagttct cacaagacca tcccccgatt ttgatttcat
1441 atttttagtg ccacccacag ttgagtcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caagattccc cattcctttg gaaaagttgt tcacgggtcc
1561 cagcagtgcc tttgttgttc aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct
1621 aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccatat
1681 cacaggtagt cgtaactaca caatgaattt ggcttctcaa aattggaaca attatgaccc
1741 aacagaagaa atcccagccc ctctaggaac tccagatttt gtggggaaga ttcaaggcat
1801 gctcacccaa accacaagga cagatggctc aacacgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gactttgctc caaaactggg tagagttcaa tttgaaactg acacagacca
1921 tgattttgaa gctaaccaaa acacaaagtt caccccaatc ggtgtcatcc aagatggtag
1981 caccacccac cgaaatgaac cccaacagtg ggtgctccca agttactcag gcagaaatac
2041 tcataatgtg catctggccc ccgctgtagc tcccactttt ccgggtgagc aacttctctt
2101 cttcagatcc accatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct
2161 cccccaggaa tgggtgcagt acttctacca agaggcagcc ccagcacaat ctgatgtggc
2221 tctgctaaga tttgtgaatc cagacacagg tagggttttg tttgagtgta agcttcataa
2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg
2341 ttattttagg tttgattctt gggtcaacca gttctacacg cttgccccca tgggaaatgg
2401 aacggggcgt agacgtgtag tataatggct ggagctttct ttgctggatt ggcatctgat
2461 gtccttggct ctggacttgg ttcccttatc aatgctgggg ctggggccat caaccaaaaa
2521 gttgagtttg aaaataacag aaaattgcaa caagcatcct tccaatttag cagcaatctg
2581 caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa
2641 aagctacaac aggaaatgat gaaagttaag caggcaatgc tcctagaggg tgggttctct
2701 gagacagatg cagcccgcgg ggcaatcaac gcccccatga caaaagcttt ggactggagc
2761 gggacaaggt actgggctcc cgatgctagg actacaacat acaatgcagg ccgcttttcc
2821 acccctcaac catcgggggc actgccagga agagctaacc ttagggatgc tgtccctgct
2881 cggggttcct ccagcaaatc ttctaactct tctactgcta cttctgtgta ctcaaatcaa
2941 actacttcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ctgggttgag gatcaaagta ggaatttgtc acctttcatg
3061 aggggggccc acaacatatc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc
3121 acagtctcaa ccgtgcctaa agaggttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcctc tcttcgctca cattcgtaag cgaggggagt cacgggtgta atgtgaaaag
3241 acaaaattga ttatctttct ttttctttag tgtctttt
//