Typing tool
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Typing tool
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Complete norovirus genomes
| KF509947 | GII.4 Sydney | |
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| GII.P4 New Orleans |
ORF1: 1..5068
ORF2: 5049..6671
ORF3: 6671..7477
LOCUS KF509947 7483 bp RNA linear VRL 17-DEC-2015
DEFINITION Norovirus Hu/GII.4/AlbertaEI337/2011/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor capsid
protein genes, complete cds.
ACCESSION KF509947
VERSION KF509947.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI337/2011/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI337/2011/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7483)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tellier,R., Honish,L.,
Senthilselvan,A. and Pang,X.L.
TITLE Emergence of a New Norovirus GII.4 Variant and Changes in the
Historical Biennial Pattern of Norovirus Outbreak Activity in
Alberta, Canada, from 2008 to 2013
JOURNAL J. Clin. Microbiol. 51 (7), 2204-2211 (2013)
PUBMED 23637302
REFERENCE 2 (bases 1 to 7483)
AUTHORS Hasing,M.E., Lee,B.E., Tellier,R. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2013) Provincial Laboratory of Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
REFERENCE 3 (bases 1 to 7483)
AUTHORS Hasing,M.E., Hazes,B., Lee,B.E., Preiksaitis,J.K. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2014) University of Alberta, Edmonton, Alberta,
Canada
REMARK Sequence update by submitter
COMMENT On Apr 8, 2014 this sequence version replaced KF509947.1.
FEATURES Location/Qualifiers
source 1..7483
/organism="Norovirus Hu/GII.4/AlbertaEI337/2011/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI337/2011/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1421482"
/country="Canada"
/collection_date="Sep-2011"
/note="genotype: GII.4"
CDS <1..5068
/codon_start=2
/product="non-structural polyprotein"
/protein_id="AHA44846.2"
/translation="AVASSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPREIPQR
PPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVKQPEESNTAFSVPPL
SQRENRDAKEPLTGAILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARIELAPLSL
YWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTT
GFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIRKLKPLNILNILA
SCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMG
GIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIV
RSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTI
NALLARIAAARSLVHRAKEELSSRPRPVVMMISGKPGIGKTHLAREVAKRIAASLTGD
QRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPVHDALRLQELADTCPLTLNCDRIEN
KGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDM
WKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEF
ELQGPTLTTFNFDRNKVLAFRQLAAENKYGLIDTMRVGKQLKDVRTMPELKQALKNVS
IKKCQIVYSGCTYILESDGKGNVKVDKTQSASVQTNNELTGALHHLRCARIRYYVKCV
QEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTNKDGCPKPKDDEEFVI
SSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR
DKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPD
DFRPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIP
QGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRST
GELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGN
DYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKT
KFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLE
AAKKTIINVLEQTIDPPERWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
QASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
GLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYAYHYDADYSRWDSTQQRAVLAAA
LEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDK
TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIP
HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
CDS 5049..6671
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AHA44847.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDITHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKAIVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVTQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
CDS 6671..7477
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AHA44848.2"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSNKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSKNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7478..>7483
ORIGIN
1 cgctgttgct agcagcaaca acgacaccgc aaaatcttca agcgacggag tgctttctag
61 catggctgtc acttttaaac gagccctcgg ggcgcggccc aagcagcccc ccccgaggga
121 aataccacaa agacccccac gaccacctac tccagaactg gttaaaaata tccccccccc
181 cccgcccaat ggagaggatg aaatagtggt ttcttatagt gtcaaagatg gtgtttccgg
241 tttgcctgac ctttccaccg tcaaacaacc ggaagaatct aacacggcct tcagtgtccc
301 cccactcagt cagagggaga atagagatgc taaggagcca cttactggag caattctgga
361 aatgtgggat ggagaaatct accattatgg cctgtatgtg gagcgaggtc tcgtactagg
421 tgtgcacaaa ccaccagctg ccatcagcct cgcaaggatt gagctagcac cactctcctt
481 gtactggaga cctgtgtaca ctcctcagta cctcatctct ccagacactc tcaagaaatt
541 acacggagaa acgttcccct acacagcctt tgacaacaat tgttatgcct tttgttgctg
601 ggtcctggac ctaaatgatt cgtggctgag caggagaatg atccagagaa caactggctt
661 cttcagaccc taccaagact ggaataggaa accccttccc actatggatg actccaaact
721 aaagaaggta gctaacatat tcctgtgtgc tctgtcttcg ctattcacca ggcccataaa
781 agatataata aggaaactaa agcctcttaa catcctcaac atcttagcct catgtgattg
841 gacctttgca ggtatagtgg agtccctgat actcttggca gagctctttg gagttttctg
901 gacaccccca gatgtgtctg cgatgattgc ccccttactc ggtgactacg agctacaagg
961 acctgaggac cttgcagtgg agctcgtccc cgtagtgatg ggtggaattg gtttggtgct
1021 agggttcacc aaagagaaga ttgggaaaat gttgtcatct gctgcatcca ccttgagagc
1081 ttgtaaagac ctcggtgcat atgggctaga aatcttaaag ttggtcatga agtggttctt
1141 cccgaaaaag gaggaagcaa atgaattggc tatagtgaga tctatcgagg acgcagtctt
1201 ggatctcgag gcaattgaaa acaaccactt gaccaccttg ctcaaagaca aagacagttt
1261 ggcaacctac atgagaaccc ttgaccttga ggaggagaaa gccaggaaac tctcaaccaa
1321 gtctgcctca cctgacattg tgggcacaat caacgccctt ctggcgagaa tcgctgctgc
1381 acgttctctg gtgcatcgag cgaaggagga actttccagc agaccaagac ctgtagtgat
1441 gatgatatca ggcaagccag gaatagggaa gacccacctt gctagggaag tggctaagag
1501 aatcgcagcc tcccttacag gagaccagcg tgtaggcctc atcccacgca atggcgtcga
1561 ccattgggat gcgtacaagg gggagagggt cgtcctttgg gatgactatg gaatgagcaa
1621 ccccgttcac gatgccctca ggttgcaaga actcgctgac acctgccccc tcactctaaa
1681 ctgtgacaga atcgagaaca aaggaaaggt ctttgacagc gatgtcatca ttattactac
1741 taatctggcc aacccagcac cactggacta tgtcaacttt gaagcatgct cgaggcgcat
1801 cgacttcctc gtgtatgcag aagcccctga agtcgaaaag gcgaagcgtg acttcccagg
1861 ccagcctgac atgtggaaga acgccttcag ttctgatttc tcgcacataa aactggcatt
1921 ggccccacaa ggtggcttcg acaagaacgg gaacacccca cacggaaagg gcgtcatgaa
1981 gaccctcact actggctccc ttattgcccg ggcatctggg ctactccatg agaggttaga
2041 tgagtttgaa ctacagggcc caactctcac caccttcaat tttgaccgta ataaagtgct
2101 tgcctttaga caacttgctg ctgagaacaa atatgggttg atagacacaa tgagagtggg
2161 gaaacagctc aaggatgtca gaaccatgcc agaactcaaa caagcactca agaatgtctc
2221 aatcaagaag tgccaaatag tgtatagtgg ttgcacctac atacttgaat ctgatggcaa
2281 gggcaatgtg aaagttgaca aaactcagag cgcctccgtg cagaccaaca atgaactgac
2341 tggtgccctg caccatttga ggtgcgccag aatcagatac tatgtcaagt gtgtccagga
2401 ggccctgtac tccatcatcc aaattgctgg ggctgcattt gtcaccacgc gcatcgccaa
2461 gcgcatgaac atacaagacc tgtggtccaa gccacaagtg gaaaacacag aggagaccac
2521 taacaaagac ggatgcccaa agcccaaaga tgatgaggag tttgtcattt catccgacga
2581 catcaaaact gagggtaaga aagggaagaa caagactggc cgcggcaaga agcacacagc
2641 cttctcaagc aaaggcctca gtgatgaaga gtacgatgag tacaagagga ttagggagga
2701 aaggaatggt aagtactcca tagaggagta ccttcaggac agggacaaat actatgagga
2761 ggtggccatt gccagggcga ctgaggaaga cttctgtgaa gaggaggagg ccaagatccg
2821 gcaaaggatc ttcaggccaa caaggaagca acgaaaggag gaaagagctt ctctcggtct
2881 ggtcacaggt tctgaaatta ggaaaagaaa cccagatgat ttcagaccca aggggaaact
2941 gtgggctgac gatgacagaa gtgtggacta taacgagaaa ctcagttttg aggccccacc
3001 aagcatctgg tcgaggatag tcaactttgg ttcaggttgg ggattttggg tctcccccag
3061 tctgttcata acatcaaccc atgttatacc ccagggcgca aaagagttct ttggagtccc
3121 catcaagcaa attcaggtac acaagtcagg cgagttctgt cgcttgagat tcccaaaacc
3181 aatcaggact gatgtgacgg gcatgatctt agaagaaggc gcgcctgagg gcaccgtggt
3241 cacactactc atcaaaaggt ccactgggga acttatgccc ctagcagcta ggatggggac
3301 ccatgcaact atgaagatcc aagggcgcac tgttgggggc caaatgggca tgcttctgac
3361 aggatccaat gccaaaagca tggatctggg tactacgcca ggtgattgtg gctgtcccta
3421 tatctacaag agaggtaacg actatgtggt cattggagtc cacacagctg ccgctcgtgg
3481 gggaaacact gtcatatgcg ccacccaggg gagtgaagga gaggctacac ttgaaggtgg
3541 tgacaataag gggacatact gtggcgcacc catcctaggc ccagggagtg ccccaacact
3601 tagcaccaag accaaattct ggagatcgtc cacagcatca ctcccgcctg gcacctacga
3661 accagcctat cttggtggca aggaccctag agtcaagggt ggcccttcac tgcagcaagt
3721 catgagggaa cagttgaagc cattcacaga gcccaggggc aagccaccaa agccaagtgt
3781 gttagaagct gccaagaaga ccatcatcaa tgtccttgag caaacaattg atccacctga
3841 gagatggtca ttcgcacaag cttgcgcgtc ccttgacaag accacttcca gcggtcatcc
3901 gcaccacatg cggaaaaacg actgttggaa cggggagtcc ttcacaggca agctggctga
3961 ccaggcttcc aaggccaacc tgatgtttga agaagggaag aacatgaccc cagtctacac
4021 agctgccctc aaggatgaat tagttaaaac tgacaaaatt tatggtaaaa tcaagaagag
4081 gcttctctgg ggctcggact tggcgaccat gatccgttgt gctcgagcat tcggaggcct
4141 aatggatgaa ctcaaagcac actgtgtcac actccccatt agagttggta tgaatatgaa
4201 tgaggatggc cccatcatct tcgagaggca ttccaggtac gcatatcact atgatgctga
4261 ttactctcga tgggattcga cacaacagag agccgtgttg gcagcagctc tagaaatcat
4321 ggttaaattc tccccagaac cacatttggc tcaggtagtc gcggaagacc ttctttcccc
4381 tagcgtggtg gacgtgggcg acttcacaat atcaatcaac gagggtcttc cctctggggt
4441 gccctgcacc tcccaatgga attccatcgc ccactggctc ctcactctct gcgcgctctc
4501 tgaagtcaca aatttgtccc ctgacaccat acaggctaat tccctcttct ctttttatgg
4561 tgatgatgaa attgttagca cagatataaa actggaccca gagaaattaa cagcaaagct
4621 cagggaatat gggttaaaac caacccgccc tgataaaact gaaggacccc ttgtcatctc
4681 tgaagacttg aatggcctaa ccttcctgcg gagaactgtg acccgcgacc cagctggttg
4741 gtttggaaaa ctggagcaga gttcaatact caggcaaatg tattggacta ggggccccaa
4801 ccatggagac ccatctgaaa caatgatccc acactcccaa agacctatac aattgatgtc
4861 cctactgggg gaggccgctc tccacggccc agcgttctac agcaaaatca gcaagttggt
4921 cattgcagag ctaaaagaag gcggcatgga tttttacgtg cccagacaag agccaatgtt
4981 taggtggatg agattctcag atctgagcac gtgggagggc gatcgcaatc tggctcccag
5041 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc
5101 tcgtcccaga ggtcaacaat gaggttatgg ctctggagcc cgttgttggt gccgccattg
5161 cggcacctgt agcgggccaa caaaatgtaa ttgacccctg gattagaaac aattttgtac
5221 aagcccctgg tggagagttt acagtgtccc ctagaaacgc tccaggtgaa atactatgga
5281 gcgcgccctt aggccctgat ctgaatccct acctatccca tttggccaga atgtacaatg
5341 gttatgcagg tggttttgaa gtgcaggtaa ttctcgcggg gaacgcgttc accgccggga
5401 agatcatatt tgcagcagtc ccaccaaatt tcccaactga aggcttgagc cccagccagg
5461 tcactatgtt cccccatata atagtagatg ttaggcaatt agaacctgtg ttgattccct
5521 tacccgatgt taggaataat ttctatcatt ataatcaatc aaatgacccc accattaaat
5581 tgatagcaat gttgtataca ccacttaggg ctaataatgc tggggacgat gtcttcacag
5641 tttcttgccg agttctcacg agaccatccc ccgattttga tttcatattt ctagtgccac
5701 ctacagttga gtcaagaacc aaaccattct ctgtcccaat tttaactgtt gaggagatga
5761 ccaattcaag attccccatt cccttggaga agttgttcac gggtcccagc agtgcttttg
5821 ttgttcaacc acaaaatggc aggtgcacga ctgatggcgt gctcctaggc accacccaac
5881 tatctcctgt caacatctgc accttcagag gggatatcac ccatatcaca ggtagccgca
5941 actacacaat gaatttggct tctcaaaatt ggaacaatta tgacccaaca gaagaaattc
6001 cagcccctct aggaactcca gattttgtgg ggaagattca aggtgtgctc acccaaacca
6061 caagggcaga tggctcgaca cgcggccaca aagctatagt gtacactggg agcgccgact
6121 ttgctccaaa attgggtaga gttcaatttg agactgacac agaccatgat tttgaagcta
6181 accaaaacac aaagttcacc ccagtcggtg tcacccaaga tggtagcacc acccaccgaa
6241 atgaacccca acagtgggtg ctcccaagtt attcaggcag aaatactcac aatgtgcatc
6301 tggcccccgc tgtagccccc acttttccgg gtgagcaact tctcttcttc agatccacca
6361 tgcccggatg cagcgggtac cccaacatgg atttggactg tctgctcccc caggaatggg
6421 tgcagtactt ctaccaagag gcagccccag cacaatctga tgtggctctg ctaagatttg
6481 tgaatccaga cacaggtagg gttttgtttg agtgcaagct tcataaatca ggctatgtta
6541 cagtggctca cactggccaa catgatttgg ttatcccccc caatggttat tttagatttg
6601 attcctgggt caaccagttc tacacgcttg cccccatggg aaatggaacg gggcgcagac
6661 gtgtagtata atggctggag ctttctttgc tggattagca tctgatgtcc ttggctctgg
6721 gcttggttcc cttatcaatg ctggggctgg ggccatcaac caaaaagttg aatttgaaaa
6781 taacaggaaa ttgcaacaag cttccttcca atttagcagt aatctacaac aggcttcctt
6841 tcaacatgac aaagagatgc tccaagcaca aattgaggcc accaaaaagc tacaacagga
6901 aatgatgaaa gttaagcagg caatgctcct ggagggtggg ttctctgaga cagatgcagc
6961 ccgcggggca atcaatgccc ccatgacaaa agctttggac tggagcggga caagatactg
7021 ggctcccgat gctaggacta caacatacaa tgcaggccgc ttttccaccc ctcaaccgtc
7081 gggggcattg ccaggaagag ctaatctcag ggatgctgtc cccgctcggg gttcctctaa
7141 caaatcttct aactcttcta ctgctacttc tgtgtattca aatcaaacta cttcaacgag
7201 acttggttct acagctggtt ctggtaccag tgtctcgagc ctcccgtcaa ctgcaaggac
7261 taggagctgg gttgaggatc aaagtaagaa tttgtcacct ttcatgaggg gggcccacaa
7321 catatcgttc gtcaccccac catctagcag atcctctagc caaggcacag tctcaaccgt
7381 gcctaaagag gttttggact cctggactgg cgctttcaat acgcgcaggc agcctctctt
7441 cgctcacatt cgtaagcgag gggagtcacg ggcgtaatgt gaa
//