Typing tool
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Typing tool
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Complete norovirus genomes
| KF509946 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS KF509946 7531 bp RNA linear VRL 17-DEC-2015
DEFINITION Norovirus Hu/GII.4/AlbertaEI063/2012/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor capsid
protein genes, complete cds.
ACCESSION KF509946
VERSION KF509946.3
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI063/2012/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI063/2012/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7531)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tellier,R., Honish,L.,
Senthilselvan,A. and Pang,X.L.
TITLE Emergence of a New Norovirus GII.4 Variant and Changes in the
Historical Biennial Pattern of Norovirus Outbreak Activity in
Alberta, Canada, from 2008 to 2013
JOURNAL J. Clin. Microbiol. 51 (7), 2204-2211 (2013)
PUBMED 23637302
REFERENCE 2 (bases 1 to 7531)
AUTHORS Hasing,M.E., Lee,B.E., Tellier,R. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2013) Provincial Laboratory of Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
REFERENCE 3 (bases 1 to 7531)
AUTHORS Hasing,M.E., Hazes,B., Lee,B.E., Preiksaitis,J.K. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2014) University of Alberta, Edmonton, Alberta,
Canada
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 7531)
AUTHORS Hasing,M.E., Hazes,B., Lee,B.E., Preiksaitis,J.K. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2015) University of Alberta, Edmonton, Alberta,
Canada
REMARK Nucleotide and amino acid sequences updated by submitter
COMMENT On Dec 17, 2015 this sequence version replaced KF509946.2.
FEATURES Location/Qualifiers
source 1..7531
/organism="Norovirus Hu/GII.4/AlbertaEI063/2012/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI063/2012/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1421481"
/country="Canada"
/collection_date="Jan-2012"
/note="genotype: GII.4"
CDS <1..5093
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AHA44843.3"
/translation="ASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYNGSTYTLEADGKGGVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKP
KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5074..6696
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AHA44844.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 6696..7502
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AHA44845.2"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7503..>7531
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat
61 cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc
121 ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca cccacaccag
181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt
241 acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga caaccggaag
301 aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg
361 agccactaac tggaacaatt attgaaatgt gggatggaga aatctaccat tacggcctgt
421 acgtggaacg aggtcttata cttggtgtgc acaagccacc ggcagccatc agccttgcca
481 aggtcgagct agcaccgctc tctttgttct ggagacctgt atacaccccc cagtatctca
541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgaca
601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctaagcagga
661 gaatgattca gagaacaaca ggtttcttca ggccgtacca ggattggaac aggaaacccc
721 tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt
781 cttcactatt caccagaccc attaaggaca taatagggaa gttgaaacct cttaacatcc
841 ttaacattct ggctacatgt gattggacct tcgcaggcat agtggaatcc ttaatactct
901 tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct
961 tgctaggtga ttatgaactg caaggacctg aggaccttgc agtggaactg gtcccaatag
1021 tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaattgga aagatgctat
1081 catccgctgc atccacttta agagcttgta aagaccttgg tgcatacgga ctggaaatct
1141 taaaattgat catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg
1201 tgagatccat cgaggatgca gtgctagacc tcgaggcaat tgaaaacaac cacatgacca
1261 ccctactcaa agacaaagac agcttggcaa cctacatgag aacccttgac cttgaggagg
1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acaatcaact
1381 ctcttctggc aagaatcgct gctgcacgct ccctagtgca tcgggcgaaa gaagagctct
1441 ccagcaggcc gagacctgtc gttgtgatga tatcgggaaa accagggata gggaaaactc
1501 accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg
1561 gtcttatccc acgcaatggt gtcgaccact gggacgcata caagggcgaa agagttgtcc
1621 tatgggacga ctatggaatg agcaacccca tccatgatgc cctcaggttg caggagcttg
1681 ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaaggg aaagtctttg
1741 acagtgatgc cataattatc accaccaatc tggccaaccc agcaccactg gattatgtca
1801 actttgaagc gtgctcgaga cgcattgact tcctcgtgta cgcagaagcc cctgaggtgg
1861 agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg
1921 acttctcaca cataaaactg tcattggctc cacagggtgg ttttgacaag aacggcaaca
1981 ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc gcccgagcat
2041 cagggttact ccatgagagg ctagatgaat atgaactgca aggcccagcc ctcaccactt
2101 tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg
2161 ggctgatgga cacaatgaga gttggaaaac agctcaagga tgtcaagacc atgtcagacc
2221 tcaaacaagc actcaagaac atcgcgatca agaagtgcca gatagtgtac aatggtagca
2281 cctacacact tgaggccgat ggcaagggtg gtgtgaaagt tgacaaagtg caaagtgcca
2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc gctagaatca
2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg
2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccaagccac
2521 aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc aaagatgatg
2581 aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt
2641 ccggccgtgg caagaagcac acagcctttt caagcaaagg gctcagtgat gaggagtacg
2701 atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc
2761 aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa gaggacttct
2821 gtgaagaaga agaggccaaa atccggcaga gaattttcag accaacaagg aaacaacgca
2881 aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag agaaacccag
2941 aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt gactacaatg
3001 agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag
3061 gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccaag
3121 gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaaa tcaggtgaat
3181 tctgccggtt gagattccca aagccaatca gaactgatgt gacgggcatg atcctagaag
3241 aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca
3301 tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg
3361 gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac ctaggcacaa
3421 caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac gtggtcatag
3481 gagtccatac ggccgctgcc cgtggaggaa acactgtcat atgtgccacc caggggagtg
3541 agggagaagc cacacttgaa ggaggtgaca gtaaagggac atactgtggc gcaccaatct
3601 tgggcccagg gagcgctccg aagctcagta ccaagactaa gttttggaga tcatccacaa
3661 caccactccc acctggcacc tacgaaccag cctatctcgg tggcaaagac cccagagtca
3721 aaggtggccc ttcattgcaa caagttatga gggaccagct gaagccattc acagaaccca
3781 gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc atcaatgtcc
3841 ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg
3901 acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgattgt tggaatgggg
3961 agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg tttgaagagg
4021 gaaagaacat gactccagtc tatacaggtg cacttaaaga tgagttggta aagaccgata
4081 aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg accatgatac
4141 ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcacactgt gtcacacttc
4201 ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag aagcactcca
4261 gatatagata tcactatgat gctgattatt cccggtggga ctcaacacaa caaagggatg
4321 tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac ctggcccaga
4381 tagttgcaga agacctcctt tcccctagcg taatggatgt aggtgacttt caaatatcaa
4441 taagtgaggg tctcccctct ggagtacctt gtacctctca gtggaattcc atcgcccact
4501 ggctcctcac tctttgtgca ctctctgaag tcacggacct gtcccctgac attattcagg
4561 ccaactccct tttctccttt tatggtgatg atgagattgt aagcacagac ataaagttgg
4621 acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc cgccccgaca
4681 aaactgaagg accccttgtt atctctgaag acctggatgg cctgacattc ctccggagaa
4741 ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca attctcaggc
4801 aaatgtactg gaccaggggt cccaaccatg aagacccatt tgaaacaatg ataccacact
4861 cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac ggcccggcat
4921 tctatagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc atggattttt
4981 acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg
5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg
5161 gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt atcccctaga
5281 aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa tccctaccta
5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc
5401 gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca
5461 actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt agatgttagg
5521 caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattacaat
5581 caatcaaatg accccaccat taagttgata gcaatgttgt atacaccact tagggctaat
5641 aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgagacc atcccccgat
5701 tttgatttca tatttttagt gccacccaca gttgagtcaa gaactaaacc attctctgtc
5761 ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccattccttt ggaaaagttg
5821 ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggcaggtg cacgactgat
5881 ggcgtgctcc taggcaccac ccaactgtct cctgtcaaca tctgcacctt cagaggagat
5941 gtcacccata tcacaggtag tcgtaactac acaatgaatt tggcttctca aaattggaac
6001 aattatgacc caacagaaga aatcccagcc cctctaggaa ctccagattt tgtggggaag
6061 attcaaggcg tgctcaccca aaccacaagg acagatggct caacacgcgg ccacaaagct
6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact
6181 gacacagacc atgattttga agctaaccaa aatacaaagt tcaccccagt cggtgtcatc
6241 caagatggtg gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca
6301 ggcagaaata ctcataatgt gcatctggcc cccgctgtag cccccacttt tccgggtgag
6361 caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa
6481 tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgagtgt
6541 aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga tttggttatc
6601 ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac gcttgccccc
6661 atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat
6721 tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg gctggggcca
6781 tcaaccaaaa agttgaattt gaaaataaca gaaaattgca acaagcatcc ttccaattta
6841 gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa gcacaaattg
6901 aggccaccaa aaagctacaa caggaaatga tgaaagttaa gcaggcaatg ctcctagagg
6961 gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccccatg acaaaagctt
7021 tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca tacaatgcag
7081 gccgcttttc cacccctcaa ccatcggggg cactgccagg aagagctaat cttagggatg
7141 ctgtccctgc tcggggttcc tccagcaaat cttctaactc ttctactgct acttctgtgt
7201 actcaaatca aactacttca acgagacttg gttctacagc tggttctggt accagtgtct
7261 cgagcttccc gtcaactgca aggactagga gctgggttga ggatcaaagt aggaatttgt
7321 cacctttcat gaggggggcc cacaacatat cgtttgtcac cccaccatct agcagatcct
7381 ctagccaagg cacagtctca accgtgccta aagaggtttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag tcacgggcgt
7501 aatgtgaaaa gacaaaattg gttatctttc t
//