Typing tool
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Typing tool
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Complete norovirus genomes
| KF306213 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS KF306213 7578 bp RNA linear VRL 16-APR-2014
DEFINITION Norovirus Hu/GII.3/Jingzhou/2013402/CHN, complete genome.
ACCESSION KF306213
VERSION KF306213.1
KEYWORDS .
SOURCE Norovirus Hu/GII.3/Jingzhou/2013402/CHN
ORGANISM Norovirus Hu/GII.3/Jingzhou/2013402/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7578)
AUTHORS Huo,Y., Cai,A., Yang,H., Zhou,M., Yan,J., Liu,D. and Shen,S.
TITLE Complete nucleotide sequence of a norovirus GII.4 genotype:
evidence for the spread of the newly emerged pandemic Sydney 2012
strain to China
JOURNAL Virus Genes 48 (2), 356-360 (2014)
PUBMED 24282081
REFERENCE 2 (bases 1 to 7578)
AUTHORS Huo,Y.Q., Zhou,M.L., Yang,H., Cai,A.L., Yan,J.X., Liu,D.X. and
Shen,S.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2013) Gene Department, Wuhan Institute of
Biological Products, No. 9, Linjiang Road, Wuchan District, Wuhan,
Hubei 430062, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7578
/organism="Norovirus Hu/GII.3/Jingzhou/2013402/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.3/Jingzhou/2013402/CHN"
/host="Homo sapiens"
/db_xref="taxon:1406148"
/country="China"
/collection_date="Apr-2013"
CDS 5..5104
/codon_start=1
/product="nonstructural protein"
/protein_id="AGX01094.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPREIPQRPPRPPTPELIKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKNVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETVSKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDHNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AGX01095.1"
/translation="MKMASNDAAPSNDGAAGLVPEISSEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEPDFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLRFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6731..7495
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AGX01096.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLSAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTAHRPTPNFKTNQAPKPTPNSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaata ccacaaaggc ctccacggcc
181 acccacccca gaattgatca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtctct tacagcgcca aagatggcgt ttctggtttg cctgagctca ccactgtcag
301 gcagccggat gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaacag
361 ggacgccaag gagccactga ccggaacaat cctggaaatg tgggatgggg agatctatca
421 ttatggtctg tatgtggagc gaggccttgt gcttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaac tcgcaccact ttctctattt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gaggctgcat ggagagtcgt tcccttacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt cttgacctaa acgactcgtg
661 gttgtgcagg agaatgatcc aaaggacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacta tggatgactc caaattaaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc tatcaaagat ataataggaa aggtgagacc
841 gctcaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtagaatc
901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagagcttgt aaagatcttg gtgcatatgg
1141 attggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aggcaaatga
1201 gctggccatg gtgaggtcca ttgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagtttggca acctacatga gaacccttga
1321 cctcgaggag gagaaagcca ggaaactttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gccctactgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcaggc caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaaaatc gcggcttcgc ttacagggga
1561 ccagcgtgtg ggcctcatcc ctcgcaatgg cgttgatcac tgggatgcat ataagggtga
1621 aagagtcgtc ctatgggatg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctgaactgt gacaggattg agaacaaggg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag acgcattgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagttct gacttctcgc acataaaatt ggcgctggct ccgcagggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt tatgaaaacc cttaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tatgagctgc agggcccaac
2101 tcccaccacc tttaactttg accgcaataa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac ggattgttgg acacaatgag agttggaaag cagctcaagg atgtcaagac
2221 catgccagag ctcaaacagg cactcaagaa tgtcgcaatc aagaattgtc agatagtgta
2281 tggtggctgc acttataggc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga acttgccggc gccctacacc accttaggtg
2401 tgccagaatc agatattatg tcaagtgtgt ccaagaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtga ccacgcgcat tgtcaagcgc atgaacatac aagacctctg
2521 gtccaagcca caggtagagg atacagagga aaccgtcagc aaggatgggt gcccaaaacc
2581 caaggatgat gaagagttcg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaggg
2641 gaagaacaaa tctggccgtg gtaagaagca cacggcattc tcaagtaaag gtctcagtga
2701 tgaggagtac gatgagtaca aaaggatcag ggaagaaaga aatggaaaat attccataga
2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagagg aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga ggacctccct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca aacctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgaccacaat gagagactca attttgaagc cccgccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caacccatgt
3121 cataccccag ggcgcacagg agttctttgg tgtccccatc aaacagattc agatacacaa
3181 atcgggtgaa ttctgccgtt tgaggtttcc aaaaccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ttactcatca aaaggccaac
3301 tggggaactc atgcccctgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcta agagtatgga
3421 cctaggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg gaaatgacta
3481 cgtagtcatt ggagttcaca cggctgccgc ccgtggagga aacactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 tgcaccaatc ttaggtccag gaagtgcccc aaaactcagc accaagacta aattctggag
3661 gtcgtccacg gcaccactcc cacctggtac ctatgagcca gcctacctcg gcggcaagga
3721 ccccagagtt aagggtggcc cctcattaca acaagttatg agggaccaac tgaaaccatt
3781 cactgagccc aggggcaaac caccaaagcc aagtgtgtta gaagctgcca agaaaaccat
3841 cgtcaacgtc cttgaacaaa caattgatcc acctcaaaaa tggtcgtttg cacaagcttg
3901 cgcttccctt gacaagacca cttccagcgg tcatccgcac catatgcgaa aaaatgactg
3961 ttggaacggg gagtccttca caggaaaatt agcagaccag gcttccaagg ctaacctgat
4021 gttcgaggag ggaaagaaca tgaccccagt ctacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gcaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatc cggtgcgctc gggcattcgg aggcctgatg gaggaactca aagcacactg
4201 tgtcacacta cccgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatataaat accattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttggcag cagccttaga aatcatggtc aagttctccc cagaaccgca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caagatatca atcaatgagg gtctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgag gtcacaaacc tgtcccctga
4561 catcattcag gccaactctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaagttg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccaac
4681 ccgccctgac aagactgaag gaccacttgt catctctgaa gacctgaatg gtctaacttt
4741 cctgcggagg accgtgaccc gcgacccagc gggctggttt ggaaagttgg aacagagttc
4801 aatacttaga caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacat tcccagaggc ccatacaatt gatgtctttg ctgggtgagg ctgcacttca
4921 cggcccagca ttctatagca aaatcagtaa actggtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagaacc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgctgc tccatctaat gatggtgctg ccggcctcgt cccagagatc agcagtgagg
5161 caatggcgct agaaccagtg gcgggtgcag cgatagcagc acccctcact ggtcagcaga
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag
5281 tatctcctag aaattcccct ggtgaagttc ttctcaattt ggaattgggt ccagaaataa
5341 atccctattt ggcccatctt gctagaatgt ataatggtta tgcaggtgga tttgaagtac
5401 aggtggtcct agctggaaat gcgtttacag caggaaagat aatctttgca gctattcccc
5461 ctaattttcc aattgataat ctaagtgcag cacagatcac aatgtgtcca catgtgattg
5521 tggatgtcag gcagctggaa ccagtcaacc tcccgatgcc tgacgtccgc aataacttct
5581 tccattacaa tcaagggtct gattcgagat tgcgcctaat tgcaatgcta tatacacctc
5641 ttagggcaaa taattctggg gacgatgttt ttactgtgtc ttgcagagtg ctaactagac
5701 ctagccctga cttctcattt aattttcttg tgccacccac tgtggagtca aagacaaaac
5761 ccttttccct ccctattctg actatctccg aaatgtccaa ttctaggttc ccagtaccaa
5821 ttgattcttt gcacaccagc cctactgaga acattgttgt ccagtgtcag aatgggcgag
5881 tcacccttga tggtgagttg atgggcacca cccaactctt acctagccaa atctgtgctt
5941 tcaggggcac gctcaccaga tcaacaagca gggccagtga ccaggctgat acagcaaccc
6001 ctagattgtt taattattat tggcatatac aattggataa cctaaatgga actccttatg
6061 accctgcaga agatatacca gcccccctag ggacaccaga tttccggggt aaagtctttg
6121 gcgtggccag ccagagaaat cctgacgcca cgactagggc acatgaagca aagatagaca
6181 caacatctgg ccgcttcacc ccaaaactag gttcactaga gatttccact gagtctggag
6241 attttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccatgagc
6301 cagattttca acaatgggct cttcccgact atgcaggcca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 tgccatcttc tggtgggcgg tccaacggga ttctagactg cctggtcccc caagaatggg
6481 tgcagcattt ctaccaagaa tcagccccct cccaaactca agtggcccta gttaggtatg
6541 tcaaccctga cactggtaga gtgttatttg aggccaagtt gcacaaatta cgtttcatga
6601 ctatagccaa gagtggtgac tccccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaaccccttt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 ggattcaata atggctggag cttttatagc aggattggct ggtgatatgc tcacaaatac
6781 tgtaggatct ttagttaatg caggggctaa tgccattaat caaacaattg attttgaaaa
6841 taataaatat ttgcaaaatg cctcttttaa tcatgataag gagatgttga gtgcacaaat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aagcaagggg ttttgaccgc
6961 tggcggcttc tcccctactg atgcagcccg cggggcaatt aatgccccca tgacaaaagt
7021 cctagattgg aatggaacga gatactgggc accaggtgcc acctccacaa cctcgatgtc
7081 gggtggcttc acgaatcaaa ctgcgcacag acccacacca aattttaaaa cgaaccaggc
7141 ccccaaaccc acccccaaca gtgggtcctc agtgaggtca aattcaaccc aaattaccag
7201 cctgagttca cactcgtccg ggtcgtctcg atccagcggg tctacagttg tcagctcaat
7261 accatcctct aacaggacta gggactgggt taaccaacaa aattttaatt tggaaccaca
7321 catgcctgga tctcttagaa cagcttttgt cactccacca tctagtacag cctctagctc
7381 aggcacagtc tcaactgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaatac
7441 gcgcagacag ccgctattcg cacaccttcg cagaaggggg gagtcaaatg tttagtgaaa
7501 aggttatttt aaatttggtt taagattgga tttaatttgg aatcttttaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaa
//