Typing tool
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Typing tool
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Complete norovirus genomes
| KF145148 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..1737
ORF2: 1718..3340
ORF3: 3340..4146
LOCUS KF145148 4197 bp RNA linear VRL 10-JUL-2014
DEFINITION Norovirus Hu/GII.4/JP10909/2012/JPN non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KF145148
VERSION KF145148.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/JP10909/2012/JPN
ORGANISM Norovirus Hu/GII.4/JP10909/2012/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4197)
AUTHORS Thongprachum,A., Chan-It,W., Khamrin,P., Okitsu,S., Mizuguchi,M.,
Hayakawa,S., Maneekarn,N. and Ushijima,H.
TITLE Emergence of a New Norovirus GII.4 2012 Variant Associated with
Acute Gastroenteritis among Japanese Pediatric Patients
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4197)
AUTHORS Thongprachum,A., Chan-It,W., Khamrin,P., Okitsu,S., Mizuguchi,M.,
Hayakawa,S., Maneekarn,N. and Ushijima,H.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2013) Developmental Medical Sciences, School of
International Health, The University of Tokyo, 7-3-1 Hongo,
Bunkyo-ku, Tokyo 113-0033, Japan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4197
/organism="Norovirus Hu/GII.4/JP10909/2012/JPN"
/mol_type="genomic RNA"
/isolate="Hu/GII.4/JP10909/2012/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1398707"
/geo_loc_name="Japan"
/collection_date="2012"
/note="genotype: GII.4"
CDS <1..1737
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AGV40223.1"
/translation="VGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVH
TAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTT
PLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIIN
VLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLM
FEEGKSMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKA
HCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFS
PEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEV
TDLSPDIIQANSLFSFYGDDEIVSTDIKWDPEKLTAKLKEYGLKPTRPDKTEGPLVIS
EDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQL
MSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRN
LAPSFVNEDGVE"
CDS 1718..3340
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AGV40221.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
CDS 3340..4146
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AGV40222.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGVLPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPSMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagtat ggacctaggc
61 acaacaccag gcgactgcgg ctgcccctac atttacaaga gggggaatga ctacgtggtc
121 ataggagtcc atacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg
181 agcgagggag aagccacact tgaaggaggt gacagtaaag ggacatactg tggcgcacca
241 atcttgggcc cagggagcgc tccgaagctc agtaccaaga ctaagttttg gagatcatcc
301 acaacaccac tcccacctgg cacttacgaa ccagcctacc tcggtggcaa agaccccaga
361 gtcaaaggtg gcccttcatt gcaacaagtt atgagggacc agctgaagcc attcacagaa
421 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat
481 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc
541 cttgacaaaa ccacctccag cggccacccg caccacatgc ggaaaaacga ttgttggaat
601 ggggagtcct tcacaggaaa attggctgat caagcctcca aggccaacct aatgtttgaa
661 gagggaaaga gcatgactcc agtctacaca ggtgcactta aagatgagtt ggtaaagacc
721 gataaagttt atggtaaggt caagaagagg cttctgtggg gttcagatct ggcgaccatg
781 atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca
841 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaagcac
901 tccagatata gatatcacta tgatgctgat tattcccggt gggactcaac acagcaaagg
961 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acatttggcc
1021 cagatagttg cagaagacct cctttcccct agcgtaatgg atgtaggtga cttccaaata
1081 tcaataagtg agggtctccc ctctggggta ccttgtacct cccagtggaa ttccatcgcc
1141 cactggctcc tcactctttg tgcactctct gaagtcacgg acctgtcccc tgacatcatt
1201 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac agacataaag
1261 tgggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc
1321 gacaaaactg aaggacccct tgttatctct gaagacctgg atggcctgac attcctccgg
1381 agaaccgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctc
1441 aggcaaatgt actggaccag gggtcccaac catgaagatc catttgaaac aatgatacca
1501 cactcccaaa gacctataca attgatgtcc ttgctgggcg aggctgcact ccacggcccg
1561 gcattttata gcaaaattag caagttagtc attgcagagt tgaaggaagg tggcatggat
1621 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg
1681 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
1741 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc
1801 tctggagccc gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat
1861 tgacccctgg attaggaaca attttgtaca agcccctggt ggagagttta cagtatcccc
1921 tagaaacgct ccaggtgaaa tactatggag cgcgccctta ggccctgatc taaatcccta
1981 cctttcccat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat
2041 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt
2101 tccaactgaa ggcttaagcc ccagccaggt cactatgttc ccccatataa tagtagatgt
2161 tagacaacta gaacctgtgc tgattccctt acccgatgtc aggaataatt tctatcatta
2221 caatcaatca aatgactcca ctattaagtt gatagcaatg ttgtatacac cacttagggc
2281 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga gaccatcccc
2341 cgattttgat ttcatatttt tagtgccacc cacagttgag tcaagaacta aaccattctc
2401 tgtcccagtt ttaactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa
2461 gttgttcacg ggccccagca gtgcctttgt tgttcaacca caaaacggca ggtgcacgac
2521 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aacatctgca ccttcagagg
2581 ggatgtcacc cacatcacag gtagtcgtaa ctacacgatg aatttggctt ctcaaaattg
2641 gaacaattat gacccaacag aagaaatccc agcccctcta gggactccag attttgtggg
2701 gaaaattcaa ggcatgctca cccaaaccac aaggacagat ggctcaacac gcggccacaa
2761 agctacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag ttcaatttga
2821 aactgacaca gaccatgatt ttgaagctaa ccaaaacaca aagttcaccc cagtcggtgt
2881 tatccaagat ggtagcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagtta
2941 ctcaggcaga aatactcata atgtgcatct ggcccccgct gtagccccca cttttccggg
3001 tgagcaactt ctcttcttca gatccaccat gcccggatgc agcgggtacc ccaacatgga
3061 tttggactgt ctgctccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
3121 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga
3181 gtgtaagctt cataaatcag gctatgttac agtggctcac actggccaac atgatttggt
3241 tatccccccc aatggttatt ttaggtttga ttcctgggtt aaccagttct acacgcttgc
3301 ccccatggga aatggaacgg ggcgtagacg tgtagtataa tggctggagc tttctttgct
3361 ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg
3421 gccatcaacc aaaaagttga gtttgaaaat aatagaaaat tgcaacaagc atccttccaa
3481 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
3541 attgaggcca ccaaaaagct acaacaggaa atgatgaaag ttaagcaggc aatgctccta
3601 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc catgacaaaa
3661 gctttggact ggagcgggac aaggtactgg gctcccgatg ctaggactac aacatacaat
3721 gcaggccgct tttccacccc tcaaccatcg ggggtactgc caggaagagc taatcttagg
3781 gatgctgtcc ctgctcgggg ttcctccagc aaatcttcta actcttctac tgctacttct
3841 gtgtactcaa atcaaactac ttcaacgaga cttggttcta cagctggttc tggaaccagt
3901 gtctcgagcc tcccgtcaac tgcaaggact aggagctggg ttgaggatca aagtaggaat
3961 ttgtcacctt ccatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga
4021 tcctctagcc aaggcacagt ctcaaccgtg cctaaagagg ttttggactc ctggactggc
4081 gctttcaaca cgcgcaggca gccactcttc gctcacattc gtaagcgagg ggagtcacgg
4141 gcgtaatgtg aaaagacaaa attgattatc tttctttttc tttctttagt gtctttt
//