Typing tool
|
Complete norovirus genomes
KC894943 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 3..5102 ORF2: 5083..6705 ORF3: 6705..7511LOCUS KC894943 7556 bp RNA linear VRL 04-AUG-2013 DEFINITION Norovirus Hu/GII.4/Guangzhou/GZ2010-L91/CHN/2011, complete genome. ACCESSION KC894943 VERSION KC894943.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Guangzhou/GZ2010-L91/CHN/2011 ORGANISM Norovirus Hu/GII.4/Guangzhou/GZ2010-L91/CHN/2011 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7556) AUTHORS Xue,L., Wu,Q., Kou,X. and Zhang,J. TITLE Direct Submission JOURNAL Submitted (12-APR-2013) State Key Laboratory of Applied Microbiology (Ministry-Guangdong Province Jointly Breeding Base), South China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, No. 100, Xianliezhong Road, Yuexiu District, Guangzhou, Guangdong 510070, China COMMENT ##Assembly-Data-START## Assembly Method :: BioEdit v. 7.0.1 Sequencing Technology :: 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7556 /organism="Norovirus Hu/GII.4/Guangzhou/GZ2010-L91/CHN/2011" /mol_type="genomic RNA" /isolate="Hu/Guangzhou/GZ2010-L91/CHN/2011" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1379487" /country="China" /collection_date="14-Jan-2011" /note="genotype: GII.4" CDS 3..5102 /note="ORF1; encodes NTPase, 3A-like protein, VPg, Protease, and RdRp" /codon_start=1 /product="non-structural polyprotein" /protein_id="AGS16692.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSNMAVTLKRALGARP KQPPPREIPQGPPRPTTPELVKKIPPPPPNGEDEVVVSYSAKGGVSGIPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLVLLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSSPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC PKPKDNEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGRLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICAAQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIGPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGAPKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYNKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5083..6705 /note="ORF2; VP1" /codon_start=1 /product="major viral capsid protein" /protein_id="AGS16693.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPNYSGSDVPNVHLAPAVAPNFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6705..7511 /note="ORF3; VP2" /codon_start=1 /product="minor viral capsid protein" /protein_id="AGS16694.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSAPQPSGVLPGRANPRAPTPARGSPNTSS SASTATSIYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca 61 ccgcaaaatc ttcaagtgac aaaatgtttt ctaacatggc tgtcaccctc aaacgagccc 121 tcggggcgcg gcctaaacag ccccccccga gggaaatacc acaaggaccc ccacgaccaa 181 ctactccaga actggtcaaa aagatccctc cccccccgcc caacggagag gacgaagtag 241 tggtttctta tagtgccaaa ggtggtgttt ccggtatacc tgagctttcc accgtcaggc 301 aaccggaaga aaccaatacg gctttcagtg tccctcccct caatcagagg gagaataggg 361 atgctaagga gccactgact ggaacaattt tggaaatgtg ggatggagaa atctaccatt 421 atggcctgta tgttgagcga ggtcttgtgc tgggtgtgca caaaccacca gctgccatta 481 gcctcgccaa ggtcgaacta acaccactct ccttgttctg gagacctgtg tacactcctc 541 agtacctcat ctctccagac actctcaaga aattacacgg agaaacattt ccctacacag 601 ccttcgacaa caattgctat gccttctgtt gctgggtcct ggatctaaac gactcgtggc 661 tgagtaggag aatgatccag agaacaactg gcttcttcag accctaccaa gattggaata 721 ggaaacccct ccccactatg gatgattcca aattaaagaa ggtagctaac atattcctgt 781 gcaccctgtc ttcgctattc accaggccca taaaagacat aatagggaag ttaaggcctc 841 tcaacatcat caacatcctg gcttcatgtg attggacttt cgcaggcata gtggaatcct 901 tggtactctt ggcagaactc tttggagtct tctggacacc cccagatgtg tctgcgatga 961 ttgccccctt actcggtgat ttcgagttac aagggcctga ggaccttgta gtggagctcg 1021 tccctgtagt aatgggggga attggtttgg tgctaggatt caccaaggag aagattggaa 1081 aaatgttgtc atctgctgca tccaccttaa gagcttgtaa agatcttggt gcgtatgggc 1141 tagagatcct aaagttagtc atgaagtggt tcttcccgaa gaaagaggaa gcaaatgaac 1201 tggctatggt gagatccatc gaggatgcag tgctagacct tgaggcaatt gaaaacaacc 1261 acatgaccac cttgctcaaa gacaaagaca gcctggcaac ctatatgaga acccttgacc 1321 tcgaggaaga gaaagccaga aaactctcaa ccaagtctgc ttcacctgac atcgtgggca 1381 caatcaacgc ccttctggcg agaatcgccg ctgcacgctc cctggtgcac cgagcgaagg 1441 aggagctttc tagcagacca agacctgtag tcttgatgat atcaggcaga ccaggaatag 1501 ggaagaccca ccttgctagg gaagtggcta agagaatcgc agcttccctc acaggagacc 1561 agcgtgtagg cctcatccca cgcaatggcg tcgatcactg ggatgcgtac aagggggaga 1621 gggtcgtcct atgggacgac tatggaatga gcagtcccat ccacgacgcc ctcaggctgc 1681 aagaactcgc tgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa 1741 aggtctttga cagcgatgtc atcattatca ctactaacct ggccaaccca gcaccactgg 1801 actatgtcaa ctttgaagcg tgctcgaggc gcattgattt cctcgtgtat gcagaagccc 1861 ccgaggtcga aaaggcgaag cgtgacttcc caggccagcc tgacatgtgg aaaaacgctt 1921 ttagttctga tttctcacac ataaaattgg cactggctcc acaaggtggc tttgataaga 1981 acgggaacac cccgcatggg aagggcgtca tgaagactct caccactggc tccctcattg 2041 cccgggcatc agggctgctc catgagagat tggatgagtt tgaactacag ggcccagctc 2101 ttaccacctt caactttgac cgcaacaaag tgcttgcctt caggcagctt gctgctgaaa 2161 ataaatacgg gttgatggac acaatgaaag ttgggaggca gctcaaggat gtcaaaacca 2221 tgccagaact taaacaagca ctcaagaata tctcaatcaa gaagtgccag attgtgtata 2281 gtggttgcac ctacacactt gagtctgatg gcaagggcaa tgtgaaagtt gacagagttc 2341 agagcacctc cgttcagacc aacaatgagc tggctggcgc cctgcaccac ctaaggtgcg 2401 ccagaatcag gtactatgtc aagtgtgttc aggaggccct gtattctatc atccagattg 2461 ctggggctgc atttgtcacc acgcgcatca tcaagcgtgt gaacattcaa gacttatggt 2521 ccaagccaca agtggaaaac acagaggagg ccaccaacaa ggacgggtgc ccaaaaccca 2581 aagataatga ggagttcgtc atttcatctg acgacattaa agctgaaggt aagaaaggga 2641 agaacaagac tggccgtggc aagaaacaca cagccttttc aagtaaaggt ctcagtgatg 2701 aagagtatga tgagtacaag agaattagag aggaaaggaa tggtaagtac tccatagaag 2761 agtatcttca ggacagggat aaatactatg aggaggtggc cattgccagg gcgaccgagg 2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcaga ccaacaagga 2881 aacaacgcaa ggaagaaaga gcttctctcg gtttagtcac aggttctgaa attaggaaaa 2941 ggaacccaga cgacttcaag cctaagggga gactatgggc tgacgatgac agaagtgtgg 3001 actacaatga aaaactcagc tttgaggccc caccaagcat ctggtcaagg atagtcaact 3061 ttggctcagg ttggggcttc tgggtctccc ccagcctgtt tataacgtca acccacgtca 3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt 3181 caggcgaatt ctgtcgctta aggttcccaa aaccaatcag gactgatgtg actggcatga 3241 tcctggaaga aggcgcgccc gaaggcaccg tggtcacact actcatcaaa aggtctactg 3301 gagaactcat gcccttagca gctagaatgg ggacccatgc aaccatgaaa attcaagggc 3361 gcactgttgg gggtcagatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc 3421 taggcaccac accaggtgat tgcggctgtc cctacatcta caagagagga aatgactatg 3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccgccc 3541 aggggggtga gggggaagct acacttgaag gtggtgacag taagggaaca tactgtggcg 3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caaaaccaaa ttctggagat 3661 catccacagc accactccca cctggcacct atgaaccagc ctaccttggt ggcaaggacc 3721 ccagagtcaa gggtggcccc tcgttgcagc aagttatgag ggaccagctg aaaccattta 3781 cagagcctag gggtaaacca ccaaagccaa gtgtgttaga agctgccaag aaaaccatca 3841 tcaatgtcct tgaacaaaca attggcccac ctgagaagtg gtcgttcgca caagcctgcg 3901 cgtcccttga caagaccact tctagcggcc atccacacca catgcggaaa aacgactgct 3961 ggaacgggga atctttcaca ggcaagctgg cggaccaggc ttccaaggcc aacctgatgt 4021 ttgaagaagg gaagaacatg actccggtct acacaggtgc acctaaggat gaattagtca 4081 aaactgacaa aatttatggt aagatcaaga agaggctact ctggggctcg gatttggcaa 4141 ccatgatccg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg 4201 tcacactccc tatcagagtt ggtatgaata tgaatgagga tggccccatc atctttgaga 4261 agcattccag gtacagatac cactatgatg ctgattactc tcggtgggat tcaacacaac 4321 agagagccgt gctggcagct gctctagaaa tcatggtcaa attctcctca gaaccacatt 4381 tggctcaggt agtagcagaa gaccttcttt ctcctagcgt ggtggacgtg ggggacttca 4441 caatatcaat caacgagggt cttccctctg gggtgccctg cacctcccaa tggaactcca 4501 tcgcccactg gcttctcact ctctgtgcac tctccgaagt tacaaatttg tccccagaca 4561 tcatacaggc taattctctc ttctccttct atggtgatga tgaaattgtt agtacggaca 4621 taaaattaga cccagaaaag ttgacagcaa agcttaagga atacgggttg aaaccaaccc 4681 gccccgataa aactgaagga cctcttgtta tttctgaaga cttagatggc ttgaccttcc 4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactggag cagagctcaa 4801 tactcaggca aatgtactgg actaggggcc ctaaccatga agatccatct gaatcaatga 4861 ttccacactc tcaaagaccc atacaattga tgtccttact gggagaggcc gcactccacg 4921 gcccaacatt ctacaacaaa atcagcaaat tagtcattgc agagttaaaa gaaggtggta 4981 tggattttta cgtgcccagg caagagccaa tgttcagatg gatgagattc tcagatctga 5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat 5101 gacgccaacc catctgatgg gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt 5161 atggctttgg agcccgttgt cggtgccgct attgcggcgc ctgtagcggg ccaacaaaat 5221 gtaattgacc cctggattag gaataatttt gtacaagccc ctggtggaga gttcacagta 5281 tcccctagaa acgctccagg tgaaatacta tggagcgcac ccttaggccc tgatctgaat 5341 ccctacctat ctcatttggc cagaatgtat aatggttatg caggtggttt tgaagtgcag 5401 gtgatcctcg cggggaacgc gttcaccgcc ggaaaaatta tatttgcagc agtcccacca 5461 aattttccaa ctgaaggctt gagtcccagc caggtcacta tgttccccca cataatagtg 5521 gatgttaggc aattggaacc tgtgttgatc cccttacctg atgttaggaa taacttctat 5581 cactataatc aatcaaatga ttctaccatt aagttgatag caatgctgta tacaccactt 5641 agggctaata atgctgggga agatgtcttc acagtctctt gtcgagtcct cacgaggcca 5701 tcccctgatt ttgatttcat atttttggtg ccacctacag ttgagtcaag aactaaacca 5761 tttactgtcc caatcttgac tgttgaggaa atgaccaatt caagattccc cattcctttg 5821 gaaaagttgt tcacgggtcc cagcagtgcc tttgttgttc aaccacaaaa tggcagatgc 5881 acgactgatg gcgtgctctt aggcaccacc caactgtctc ctgtcaacat ctgcaccttc 5941 agaggggatg tcacccacat tgcaggttct cgtaattaca caatgaattt ggcttctcta 6001 aattggaaca attatgaccc aacagaagaa attccagctc ctctaggaac tccagatttc 6061 gtgggaaaga tccaaggtgt gctcactcaa accactaagg gggatggttc gacccgtggc 6121 cataaagcta cagtttacac tgggagtgcc ccctttactc caaagctggg cagtgttcaa 6181 ttcagtactg atacagaaaa tgattttgaa actcaccaaa acacaaaatt caccccagtc 6241 ggtgtcatcc aggatggtgg caccacccac cgaaatgaac cccaacaatg ggtgctccca 6301 aattattcag gtagtgatgt ccctaatgta cacctagccc ctgctgtagc ccccaatttc 6361 ccgggtgaac aacttctttt ctttaggtct actatgcccg gatgcagcgg gtatcccaac 6421 atggatttgg attgcctact cccccaggag tgggtgcagc acttctacca agaggcagct 6481 ccagcacaat ctgatgtggc tctattgaga tttgtgaatc cagacacggg tagggtcctg 6541 tttgaatgta aactccataa atcaggctat gtcacagtgg ctcacaccgg ccagcatgat 6601 ttggtcatcc cccccaatgg ttattttagg tttgattcct gggttaatca attctacaca 6661 cttgccccca tgggaaatgg aacggggcgc agacgtgctt tataatggct ggagctttct 6721 ttgctggatt ggcatctgat gtccttagct ctggacttgg ttccctaatc aatgctgggg 6781 ctggggctat taaccaaaag attgattttg aaaataacag aaaattgcag caagcttcct 6841 tccagtttag cagtaatctg caacaggctt cctttcaaca tgataaagaa atgctccaag 6901 cacaaattga agccactaaa aagttgcaac aggaaatgat gaaagtcaaa caggcagtgc 6961 tcttagaagg tggattctct gaaacagatg cagcccgtgg ggcaatcaac gcccctatga 7021 caaaggctct ggactggagc ggaacaaggt actgggcccc tgatgctagg actacaacat 7081 acaacgcagg ccgcttttcc gcccctcaac cttcgggggt actgccagga agagccaatc 7141 ccagggctcc tacccccgct cggggctccc ccaacacatc ttctagtgct tctactgcta 7201 cttctatata ttcaaatcaa actgtttcaa cgagacttgg ttctacagct ggttctggca 7261 ccagtgtctc gagtctcccg tcaactgcaa ggactaggag ttgggttgag gatcaaaaca 7321 gaaatttgtc acctttcatg aggggggctc acaacatatc gtttgtcacc ccaccatcta 7381 gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa agaagttttg gactcctgga 7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtagg cgaggggagt 7501 cacgggtgta atgtgaaaag acaaaattga ttatctttcc tttctttagt gtcttt //