Typing tool
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Typing tool
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Complete norovirus genomes
| KC894942 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS KC894942 7556 bp RNA linear VRL 04-AUG-2013
DEFINITION Norovirus Hu/GII.4/Guangzhou/GZ2010-L88/CHN/2011, complete genome.
ACCESSION KC894942
VERSION KC894942.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Guangzhou/GZ2010-L88/CHN/2011
ORGANISM Norovirus Hu/GII.4/Guangzhou/GZ2010-L88/CHN/2011
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7556)
AUTHORS Xue,L., Wu,Q., Kou,X. and Zhang,J.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2013) State Key Laboratory of Applied
Microbiology (Ministry-Guangdong Province Jointly Breeding Base),
South China, Guangdong Provincial Key Laboratory of Microbial
Culture Collection and Application, Guangdong Open Laboratory of
Applied Microbiology, Guangdong Institute of Microbiology, No. 100,
Xianliezhong Road, Yuexiu District, Guangzhou, Guangdong 510070,
China
COMMENT ##Assembly-Data-START##
Assembly Method :: BioEdit v. 7.0.1
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus
Hu/GII.4/Guangzhou/GZ2010-L88/CHN/2011"
/mol_type="genomic RNA"
/isolate="Hu/Guangzhou/GZ2010-L88/CHN/2011"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1379486"
/country="China"
/collection_date="07-Jan-2011"
/note="genotype: GII.4"
CDS 3..5102
/note="ORF1; encodes NTPase, 3A-like protein, VPg,
Protease, and RdRp"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AGS16689.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSNMAVTLKRALGARP
KQPPPREIPQGPPRPTTPELVKKIPPPPPNGEDEVVVSYSAKGGVSGIPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYYYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLRGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCILSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED
LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSQVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVER
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRANIQDLWSKPQVENTEEATNKDGC
PKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGRLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGSPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYNKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5083..6705
/note="ORF2; VP1"
/codon_start=1
/product="major viral capsid protein"
/protein_id="AGS16690.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPNYSGSDVPNVHLAPAVAPNFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6705..7511
/note="ORF3; VP2"
/codon_start=1
/product="minor viral capsid protein"
/protein_id="AGS16691.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSAPQPSGVLPGRANPRAPTPARGSPNTSS
SASTATSIYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
61 ccgcaaaatc ttcaagtgac aaaatgtttt ctaacatggc tgtcaccctc aaacgagccc
121 tcggggcgcg gcctaaacag ccccccccga gggaaatacc acaaggaccc ccacgaccaa
181 ctactccaga actggtcaaa aagatccctc cccccccgcc caacggagag gacgaagtag
241 tggtttctta tagtgccaaa ggtggtgttt ccggtatacc tgagctttcc accgtcaggc
301 aaccggaaga aaccaatacg gctttcagtg tccctcccct caatcagagg gagaataggg
361 atgctaagga gccactgact ggaacaattt tggaaatgtg ggatggagaa atctactatt
421 atggcctgta tgttgagcga ggtcttgtgc tgggtgtgca caaaccacca gctgccatta
481 gcctcgccaa ggtcgaacta acaccactct ccttgttctg gagacctgtg tacactcctc
541 agtacctcat ctctccagac actctcaaga aattacgcgg agaaacattt ccctacacag
601 ccttcgacaa caattgctat gccttctgtt gctgggtcct ggatctaaac gactcgtggc
661 tgagtaggag aatgatccag agaacaactg gcttcttcag accctaccaa gattggaata
721 ggaaacccct ccccactatg gatgattcca aattaaagaa ggtagctaac atattcctgt
781 gcatcctgtc ttcgctattc accaggccca taaaagacat aatagggaag ttaaggcctc
841 tcaacatcat caacatcctg gcttcatgtg attggacttt cgcaggcata gtggaatcct
901 tgatactctt ggcagaactc tttggagtct tctggacacc cccagatgtg tctgcgatga
961 ttgccccctt actcggtgat ttcgagttac aagggcctga ggaccttgta gtggagctcg
1021 tccctgtagt aatgggggga attggtttgg tgctaggatt caccaaggag aagattggaa
1081 aaatgttgtc atctgctgca tccaccttaa gagcttgtaa agatcttggt gcgtatgggc
1141 tagagatcct aaagttagtc atgaagtggt tcttcccgaa gaaagaggaa gcaaatgaac
1201 tggctatggt gagatccatc gaggatgcag tgctagacct tgaggcaatt gaaaacaacc
1261 acatgaccac cttgctcaaa gacaaagaca gcctggcaac ctatatgaga acccttgacc
1321 tcgaggaaga gaaagccaga aaactctcaa ccaagtctgc ttcacctgac atcgtgggca
1381 caatcaacgc ccttctggcg agaatcgccg ctgcacgctc ccaggtgcac cgagcgaagg
1441 aggagctttc tagcagacca agacctgtag tcttgatgat atcaggcaga ccaggaatag
1501 ggaagaccca ccttgctagg gaagtggcta agagaatcgc agcttccctc acaggagacc
1561 agcgtgtagg cctcatccca cgcaatggcg tcgatcactg ggatgcgtac aagggggaga
1621 gggtcgtcct atgggacgac tatggaatga gcaatcccat ccacgacgcc ctcaggctgc
1681 aagaactcgc tgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa
1741 aggtctttga cagcgatgtc atcattatca ctactaacct ggccaaccca gcaccactgg
1801 actatgtcaa ctttgaagcg tgctcgaggc gcattgattt cctcgtgtat gcagaagccc
1861 ccgaggtcga aagggcgaag cgtgacttcc caggccaacc tgacatgtgg aaaaacgctt
1921 ttagttctga tttctcacac ataaaattgg cactggctcc acaaggtggc tttgataaga
1981 acgggaacac cccgcatggg aagggcgtca tgaagactct caccactggc tccctcattg
2041 cccgggcatc agggctgctc catgagagat tggatgagtt tgaactacag ggcccagctc
2101 ttaccacctt caactttgac cgcaacaaag tgcttgcctt caggcagctt gctgctgaaa
2161 ataaatacgg gttgatggac acaatgaaag ttgggaggca gctcaaggat gtcaaaacca
2221 tgccagaact taaacaagca ctcaagaata tctcaatcaa gaagtgccag attgtgtata
2281 gtggttgcac ctacacactt gagtctgatg gcaagggcaa tgtgaaagtt gacagagttc
2341 agagcacctc cgttcagacc aacaatgagc tggctggcgc cctgcaccac ctaaggtgcg
2401 ccagaatcag gtactatgtc aagtgtgttc aggaggccct gtattctatc atccagattg
2461 ctggggctgc atttgtcacc acgcgcatca tcaagcgtgc gaacattcaa gacttatggt
2521 ccaagccaca agtggaaaac acagaggagg ccaccaacaa ggacgggtgc ccaaaaccca
2581 aagataatga ggagttcgtc atttcatctg acgacattaa aactgaaggt aagaaaggga
2641 agaacaagac tggccgtggc aagaaacaca cagccttttc aagtaaaggt ctcagtgatg
2701 aagagtacga tgagtacaag agaattagag aggaaaggaa tggtaagtac tccatagaag
2761 agtatcttca ggacagggat aaatactatg aggaggtggc cattgccagg gcgaccgagg
2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcaga ccaacaagga
2881 aacaacgcaa ggaagaaaga gcttccctcg gtttagtcac aggttctgaa attaggaaaa
2941 ggaacccaga cgacttcaag cctaagggga gactatgggc tgacgatgac agaagtgtgg
3001 actacaatga aaaactcagc tttgaggccc caccaagcat ctggtcaagg atagtcaact
3061 ttggctcagg ttggggcttc tgggtctccc ccagcctgtt tataacgtca acccacgtca
3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt
3181 caggcgaatt ctgtcgctta aggttcccaa aaccaatcag gactgatgtg actggcatga
3241 tcctggaaga aggcgcgccc gaaggcaccg tggtcacact actcatcaaa aggtctactg
3301 gagaactcat gcccttagca gctagaatgg ggacccatgc aaccatgaaa attcaagggc
3361 gcactgttgg gggtcagatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc
3421 taggcaccac accaggtgat tgcggctgtc cctacatcta caagagagga aatgactatg
3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccaccc
3541 aggggggtga gggggaagct acacttgaag gtggtgacag taagggaaca tactgtggcg
3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caaaaccaaa ttctggagat
3661 catccacagc accactccca cctggcacct atgaaccagc ctaccttggt ggcaaggacc
3721 ccagagtcaa gggtagcccc tcgttgcagc aagttatgag ggaccagctg aaaccattta
3781 cagagcctag gggtaaacca ccaaagccaa gtgtgttaga agctgccaag aaaaccatca
3841 tcaatgtcct tgaacaaaca attgacccac ctgagaagtg gtcgttcgca caagcctgcg
3901 cgtcccttga caagaccact tctagcggcc atccacacca catgcggaaa aacgactgct
3961 ggaacgggga atctttcaca ggcaagctgg cggaccaggc ttccaaggcc aacctgatgt
4021 ttgaagaagg aaagaacatg actccggtct acacaggtgc acttaaggat gaattagtca
4081 aaactgacaa aatttatggt aagatcaaga agaggctact ctggggctcg gatttggcaa
4141 ccatgatccg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg
4201 tcacactccc tatcagagtt ggtatgaata tgaatgagga tggccccatc atctttgaga
4261 agcattccag gtacagatac cactatgatg cagactactc tcggtgggat tcaacacaac
4321 agagagccgt gctggcagct gctctagaaa tcatggtcaa attctcctca gaaccacatt
4381 tggctcaggt agtagcagaa gaccttcttt ctcctagcgt ggtggacgtg ggggacttca
4441 caatatcaat caacgagggt cttccctctg gggtgccctg cacctcccaa tggaactcca
4501 tcgcccactg gcttctcact ctctgtgcac tctccgaagt tacaaatttg tccccagaca
4561 tcatacaggc taattctctc ttctccttct atggtgatga tgaaattgtt agtacggaca
4621 taaaattaga cccagaaaag ttgacagcaa agcttaagga atacgggttg aaaccaaccc
4681 gccccgataa aactgaagga cctcttgtta tttctgaaga cttagatggc ttgaccttcc
4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactggag cagagctcaa
4801 tactcaggca aatgtactgg actaggggcc ctaaccatga agatccatct gaatcaatga
4861 ttccacactc tcaaagaccc atacaattga tgtccttact gggagaggcc gcactccacg
4921 gcccaacatt ctacaacaaa atcagcaaat tagtcattgc agagttaaaa gaaggtggta
4981 tggattttta cgtgcccagg caagagccaa tgttcagatg gatgagattc tcagatctga
5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
5101 gacgccaacc catctgatgg gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt
5161 atggctttgg agcccgttgt cggtgccgct attgcggcgc ctgtagcggg ccaacaaaat
5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gttcacagta
5281 tcccctagaa acgctccagg tgaaatacta tggagcgcac ccttaggccc tgatctgaat
5341 ccctacctat ctcatttggc cagaatgtat aatggttatg caggtggttt tgaagtgcag
5401 gtgatcctcg cggggaacgc gttcaccgcc ggaaaaatta tatttgcagc agtcccacca
5461 aattttccaa ctgaaggctt gagtcccagc caggtcacta tgttccccca cataatagtg
5521 gatgttaggc aattggaacc tgtgttgatc cccttacctg atgttaggaa taacttctat
5581 cactataatc aatcaaatga ttctaccatt aagttgatag caatgctgta tacaccactt
5641 agggctaata atgctgggga agatgtcttc acagtctctt gtcgagtcct cacgaggcca
5701 tcccctgatt ttgatttcat atttttggtg ccacctacag ttgagtcaag aactaaacca
5761 tttactgtcc caatcttgac tgttgaggaa atgaccaatt caagattccc cattcctttg
5821 gaaaagttgt tcacgggtcc cagcagtgcc tttgttgttc aaccacaaaa tggcagatgc
5881 acgactgatg gcgtgctctt aggcaccacc caactgtctc ctgtcaacat ctgcaccttc
5941 agaggggatg tcacccacat tgcaggttct cgtaattaca caatgaattt ggcttctcta
6001 aattggaaca attatgaccc aacagaagaa attccagctc ctctaggaac tccagatttc
6061 gtgggaaaga tccaaggtgt gctcactcaa accactaagg gggatggttc gacccgtggc
6121 cataaagcta cagtttacac tgggagtgcc ccctttactc caaagctggg cagtgttcaa
6181 ttcagtactg atacagaaaa tgattttgaa actcaccaaa acacaaaatt caccccagtc
6241 ggtgtcatcc aggatggtgg caccacccac cgaaatgaac cccaacaatg ggtgctccca
6301 aattattcag gtagtgatgt ccctaatgta cacctagccc ctgctgtagc ccccaatttc
6361 ccgggtgaac aacttctttt ctttaggtct actatgcccg gatgcagcgg gtatcccaac
6421 atggatttgg attgcctact cccccaggag tgggtgcagc acttctacca agaggcagct
6481 ccagcacaat ctgatgtggc tctattgaga tttgtgaatc cagacacggg tagggtcctg
6541 tttgaatgta aactccataa atcaggctat gtcacagtgg ctcacaccgg ccagcatgat
6601 ttggtcatcc cccccaatgg ttattttagg tttgattcct gggttaatca attctacaca
6661 cttgccccca tgggaaatgg aacggggcgc agacgtgctt tataatggct ggagctttct
6721 ttgctggatt ggcatctgat gtccttagct ctggacttgg ttccctaatc aatgctgggg
6781 ctggggctat caaccaaaag attgattttg aaaataacag aaaattgcag caagcttcct
6841 tccagtttag cagtaatctg caacaggctt cctttcaaca tgataaagaa atgctccaag
6901 cacaaattga agccactaaa aagttgcaac aggaaatgat gaaagtcaaa caggcagtgc
6961 tcttagaagg tggattctct gaaacagatg cagcccgtgg ggcaatcaac gcccctatga
7021 caaaggctct ggactggagc ggaacaaggt actgggcccc tgatgctagg actacaacat
7081 acaacgcagg ccgcttttcc gcccctcaac cttcgggggt actgccagga agagccaatc
7141 ccagggctcc tacccccgct cggggctccc ccaacacatc ttctagtgct tctactgcta
7201 cttctatata ttcaaatcaa actgtttcaa cgagacttgg ttctacagct ggttctggca
7261 ccagtgtctc gagtctcccg tcaactgcaa ggactaggag ttgggttgag gatcaaaaca
7321 gaaatttgtc acctttcatg aggggggctc acaacatatc gtttgtcacc ccaccatcta
7381 gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa agaagttttg gactcctgga
7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtagg cgaggggagt
7501 cacgggtgta atgtgaaaag acaaaattga ttatctttcc tttctttagt gtcttt
//