Typing tool
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Typing tool
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Complete norovirus genomes
| KC894731 | GIV.1 | |
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| GIV.P1 |
ORF1: 5..5068
ORF2: 5049..6719
ORF3: 6719..7447
LOCUS KC894731 7525 bp RNA linear VRL 25-AUG-2015
DEFINITION Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011, complete genome.
ACCESSION KC894731
VERSION KC894731.1
KEYWORDS .
SOURCE Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011
ORGANISM Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7525)
AUTHORS Ao,Y.Y., Yu,J.M., Li,L.L., Jin,M. and Duan,Z.J.
TITLE Detection of human norovirus GIV.1 in China: a case report
JOURNAL J. Clin. Virol. 61 (2), 298-301 (2014)
PUBMED 25151627
REFERENCE 2 (bases 1 to 7525)
AUTHORS Duan,Z., Ao,Y., Yu,J. and Li,L.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2013) Viral Diarrhea, Institute for Viral Disease
Control and Prevention, 100 Ying-Xin Street, Xuan-Wu District,
Beijing 100052, China
COMMENT ##Assembly-Data-START##
Assembly Method :: MEGA v. 3.1
Sequencing Technology :: 454; Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011"
/mol_type="genomic RNA"
/strain="Hu/GIV.1/CCDC GR1113-59/CHN/2011"
/isolate="CCDC GR1113-59"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1338688"
/country="China"
/collection_date="20-Jul-2011"
/collected_by="Tianli Li"
/PCR_primers="fwd_seq: acgatgctcagagtgacacca, rev_seq:
caagtatcataccagtcacatctg"
/PCR_primers="fwd_seq: ctgtggaggtgactgtgatgacat, rev_seq:
catgacatctatgccaccagca"
/PCR_primers="fwd_seq: cattctcaggcaaatgtactggac, rev_seq:
ctcacaactactcattagtgagt"
/PCR_primers="fwd_seq: gcaaacatgaagattgggct, rev_seq:
ttgaatcagccacatactgtgagg"
/note="genotype: GIV"
5'UTR 1..4
CDS 5..5068
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AGN11429.1"
/translation="MKMASNDASVANSNSKTIAANNTTTPKQGGVFANMKIGLKKVLE
PKSETPTVRPKDVGKPGGTSPPDDPPGVTIKYDAQSDTIEGLPNLSTVPQPEARQVKC
VPPMAEREVKNAAEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVE
PIGLWWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRKFV
QRTTGFFDPYQKWNPKPSQYVADSKLERVGDALLTALGALFSKPIKNIIGKLKPLNFL
NLLSSCDWTFPSIVETIILIAELFDVYWEPPDVTGFLMPLLDDYEFQGPEDLAAEIVP
LILGGIGMVVGFTAEKAGKLLSSAAATLRATRELGNYGLEIVKLVMKWFFPKKESDMN
AMVRNIEDAVLDLEAVESNHITHLLKDKENMAVFLRTLDLEEEKARKLSTKAASPDII
ASVNALLARIAAVRSLAFKAKEEMCARQRPVVVMLSGRPGIGKTHYARELASRISKLL
SSDGRVGLVPRNGVDHWDSYRGEPVVVWDDYGMGNIIKDAMMLQELADTCPLTLNCDR
IENKGKMFESDVIVLTTNSPNPSPMDYVNMEAVARRVDFLVYAESPDVEKAKRDFPGD
PKAWKPFFKDDHSHLVLTLAPQGGFDKNGNTPHGKGMTRNITPNGLVARAVALAVERK
DEFQLQGPDPITYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRNVTTIEGFKKAVG
DVRFKKCRIIWKGVTYDLESDGKGSVTIDRVQSQMVQTTGEIHQAVLRLRQARVRYYV
MTAQNVTYGLLQAAGAAFVLNRIFRRAENPFSRLVKVEEDKDEDARMAIIPKKVEIVE
SNLEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQLREEKGGKYSIQEYLEDRD
RFEEEVAYAQACGGDCDDIEISRIRNSIFRPSRKQRKEERVKLGLVTGSEIRKRKPDD
FQPKGKLWADDERTVDYNEKLDFEAPASIWARIVQLGTGWGFWVSPNLLITSTHVIPK
GVEELFGVPIKQVQIHRCGEFTRLRFSKMIRPDVTGMILEDGAPEGVVCSILVKRPTG
ECLPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGND
YVVVGVHTAAGRGGNTVICAVQTGDGEAVLEGNTDNGTYCGAPIVSKGNAPQLSSKTK
FWRSSVEPLPPGTFEPAYLGGRDPRVDGGPSLYQVMRDQLKHFTAPRGRPVKPHLLQA
AVKTIENVLEQTIDPPTPWTYAQACQSLDKTTSSGWPHHVQKNTHWNGEAFTGPLADQ
ASKANLMYEQGKSMTPQYTAALKDELVKPDKVYKKVKKRLLWGADLGTMVRCARAFGP
FTDALKKCCTQLPVKVGLNINEEGPIIFEKHAQYELHYDADYSRWDSTQQREVLAAAL
GIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIIT
LTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKT
EGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPH
QNRATQLMALLGESALHGQNFYKKISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLS
TWEGDRDLAPDFVNEDGVE"
CDS 5049..6719
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AGN11430.1"
/translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ
TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG
IDVMVVLAGNAFTAGKVLIAAIPPNFPVEVVSASQATQFPHVIIDVRTLDPVRLPLPD
VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP
TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT
PVSPNYIASYRGISTGNSRSASPEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG
TPDFKAVIVGFAARPLTSGSYANEAYVNTTASNYAPATGNMRFTVRNGGTGHTSANKY
WEFKSFGVEGERHTGIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV
WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD
GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ"
CDS 6719..7447
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AGN11431.1"
/translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQVLQSN
AFQHDKDMLASQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG
TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQANHVRIDDEASSVSSLPTAVTSVPS
SRTADWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS
WTPAFNLKHQPFFARFHPRGASNV"
3'UTR 7448..7525
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctag tgttgccaac agcaacagca aaactattgc
61 tgccaacaac accacgaccc ctaaacaagg gggcgtgttt gcaaacatga agattgggct
121 caagaaagtt cttgaaccca aatctgagac acccacggta agaccaaaag acgtgggtaa
181 accggggggc accagtccac cggatgaccc cccaggtgtc acgatcaagt acgatgctca
241 gagtgacacc attgaagggc tccctaacct gtctactgtt ccacaaccag aggcgcgcca
301 ggttaagtgt gttccaccca tggcggagag ggaggtcaag aatgcggcgg aaccacaaac
361 cggctccctg ctagaaatgt atgatggatc attctatcat tatgccatct acattgagaa
421 tggcctggtt gctgggataa accgcccttc taaagctctc acaaccgcca cagtcgacgt
481 tgaaccgatt gggttgtggt ggagagtggt ctacactcca ccattctcag tctccacgtc
541 ggccctctac catctacaag gtgagaaatt cccatataac gcctttgaca ataactgtta
601 taacttctgc tgtcaggtgc tggaactgga tgattgctgg atgcgcagga agttcgtcca
661 gcgaaccact ggtttctttg acccatacca aaaatggaac ccaaaaccct cacagtatgt
721 ggctgattca aagttggaga gagtggggga cgctctcctc actgcgctgg gggcactctt
781 ctccaagcca ataaagaaca taattgggaa gctcaaacct ttgaatttct tgaatttact
841 atcgtcctgt gattggacgt tccccagcat tgtcgaaacc ataattctga ttgcagagct
901 ctttgacgtc tattgggaac caccagacgt cacagggttc ttaatgccac tcctggatga
961 ctacgaattc caggggcctg aggatttggc tgcagaaata gtcccattga tcctaggggg
1021 tatagggatg gtagtgggtt tcaccgcaga gaaggcagga aagctgttgt cctccgctgc
1081 agcaacactg agggcgacaa gggagcttgg caattatggc ctagagattg tgaaactagt
1141 gatgaagtgg tttttcccta agaaggagag tgacatgaat gcaatggtca gaaacataga
1201 ggatgctgta ctagatctgg aagcggttga gagcaaccat atcactcacc tactcaaaga
1261 caaggaaaac atggcagtct tccttcgcac cttggacctt gaggaagaaa aggccaggaa
1321 actatccact aaggctgctt cccccgacat aattgcatct gtcaacgcct tgctcgcccg
1381 cattgctgcc gtcaggtccc tcgcgtttaa agcgaaagag gagatgtgcg cccggcagcg
1441 gccagtggtg gttatgctgt caggtcgacc aggcattggc aagacacact atgccagaga
1501 gcttgcttct aggatctcca agctgctcag ttcagatggt cgcgttgggc tcgtgccaag
1561 aaatggagtt gaccattggg actcctatag gggggaacca gtggtcgttt gggacgacta
1621 tggcatggga aacatcatta aggatgccat gatgcttcaa gaattggctg acacctgccc
1681 ccttacactc aattgtgacc gtatagagaa taagggcaaa atgtttgaaa gcgatgtcat
1741 cgtcttgacc accaattcgc ccaacccaag cccgatggat tatgtcaaca tggaggccgt
1801 cgctagaagg gtggatttct tggtgtatgc tgagtccccg gatgttgaga aggcaaaaag
1861 ggactttcca ggcgatccca aagcctggaa acctttcttc aaggatgacc actcccacct
1921 cgttctcaca ttagctccac aaggtgggtt tgacaagaat ggtaacaccc cccacggaaa
1981 aggcatgact agaaacatca caccaaatgg actagtcgcc agagcggttg cgttggctgt
2041 ggaacgtaag gatgagttcc aactccaggg cccagaccca atcacctaca actttgattc
2101 ctcacaggtg gctgcatttc gaaagcttgc agctgacaac aagtacggcc ttgctgaaac
2161 tctccgcgtg ggcaacaaac tgaggaatgt gacaactata gagggcttca agaaggccgt
2221 gggggatgtc agatttaaaa agtgcaggat catctggaaa ggtgtaactt acgaccttga
2281 gtcagatggt aagggatcag tcaccattga cagggtgcag tcacagatgg tacagacaac
2341 tggggagatt caccaggctg tcctgcgctt acgccaagct cgggtgcggt actacgttat
2401 gactgctcag aatgtcacct acgggctcct tcaggccgcc ggcgcagcat tcgtccttaa
2461 caggatattc aggcgtgcag agaacccatt ctcacgccta gtcaaagtgg aggaggacaa
2521 ggacgaagat gcacgcatgg ctatcatccc caaaaaggta gagattgttg aatctaacct
2581 agaggaagaa gggaaaaaga aagggaagaa caagcaaggc agaggccgta agcacacagc
2641 tttctcctcc aaaggactga gtgacgagga gtacgaagag ttcaagcagc tcagagagga
2701 aaagggagga aagtactcaa tccaagaata cctcgaagac cgtgaccgct tcgaggaaga
2761 ggtcgcgtat gcacaggcct gtggaggtga ctgtgatgac atcgaaatca gccgcatacg
2821 caactccatt ttccgcccaa gtaggaaaca gagaaaggag gagagagtca agcttggtct
2881 ggttaccggt tctgagatca gaaaacggaa gcctgatgac ttccagccaa aagggaaact
2941 gtgggcagat gacgagagaa ccgttgatta caacgaaaag ctggactttg aagcacccgc
3001 ttccatctgg gcgcgcatag ttcagcttgg tacaggttgg ggcttttggg tctcacccaa
3061 tctcctcatc acatcaaccc atgtcatacc aaagggtgtt gaagagttat ttggggttcc
3121 aatcaagcaa gtgcaaatac acaggtgtgg tgagttcacc agacttaggt tctcgaagat
3181 gatcaggcca gatgtgactg gtatgatact tgaagatggg gcacccgaag gtgtcgtttg
3241 tagcatactg gtcaagagac caacaggtga gtgcctgcca ctagcagtca ggatgggaac
3301 ccaagctacc atgaagatac aagggaaagt ggtctcgggc caactgggga tgttgctgac
3361 tggctctaat gcaaagaaca tggacctggg gaccacccct ggtgactgtg gatgccctta
3421 cgtgtacaaa cgtggtaacg actatgtggt tgtgggtgtg cacactgccg cgggtagagg
3481 cgggaataca gtcatctgcg cagtgcaaac aggtgatggt gaagccgtac tagaaggaaa
3541 cactgataac ggcacgtact gcggcgcccc aatagtgtca aaaggtaatg caccccagct
3601 atcctcaaag acaaaattct ggaggagctc tgtcgagcct ctcccgcctg gcacgtttga
3661 gcccgcctac ctcgggggtc gcgaccccag agtcgacggt gggccctcac tttaccaggt
3721 gatgagggac caacttaaac atttcacagc tcctcgtggg agaccagtca aaccccacct
3781 cttgcaggcc gcagtcaaga caatcgagaa cgtgctggaa cagaccattg atcccccaac
3841 accatggaca tatgcacagg cttgccagtc gcttgacaag acaacgtcga gtggctggcc
3901 ccaccatgtg cagaaaaaca cccattggaa tggtgaagca tttacaggac ccttggctga
3961 ccaagccagc aaggccaatt taatgtatga acaagggaag tccatgaccc cccagtacac
4021 tgctgccctt aaggatgaac tagtgaaacc agacaaggtg tacaaaaagg tcaagaaaag
4081 gctgctgtgg ggtgcagatc tcggaaccat ggtccggtgc gccagagcat tcggcccgtt
4141 cactgacgca cttaagaagt gctgcaccca acttccagtc aaagttggac tcaacattaa
4201 tgaagaggga cccatcatct ttgagaaaca cgcccaatat gagctccact atgatgcgga
4261 ttattcgcgg tgggattcca cccagcaacg ggaggtcctt gccgccgcac ttggcatcat
4321 gacaaaattc actgctgagc cacagctggc ctccgttgtg gcagaagact tgatttcccc
4381 aagtatgctt gatgttggcg actacgtcgt ccaggtcaat gaagggctac cctctggtgt
4441 cccctgcacc tcacagttaa acagtattgc ccattggatc atcaccctca catccatggc
4501 tgaggccact ggcctggatc ctgacatcgt ccaggctaac agctacttct ccttctatgg
4561 tgatgatgaa attgtgtcaa cagacataaa attcaatcca gaggtcctca ccctgaaact
4621 taaagcaatt ggccttgtcc caacccgccc agacaagaca gaaggcccat tggtggtgtc
4681 aaacaaatta gaaggtctga cttttctgag gcgcaccata actagagaca aagtgggctt
4741 ctttggtcgg ttggataagg attccattct caggcaaatg tactggacca agggcccgaa
4801 ccatcaagac ccatctgaaa gcatgttacc ccaccagaat cgcgccacac aattgatggc
4861 cctgttgggc gagtcagcac tccatggtca aaacttctac aaaaagatta gtggcatggt
4921 aatcaaagaa gtgaagaatg gtgggcatga gttctatgtg ccaaagtttg agtccatgta
4981 caagtggatg cggttctcag acttgagcac ttgggagggg gatcgcgatc tcgctcccga
5041 ttttgtgaat gaagatggcg tcgagtgacg ctgctccatc tacggatggt gcgggcaacc
5101 tcgttccaga gagtcaacaa gaggtgttgc ccctcgcccc agttgcaggc gctgcgttag
5161 cggcacctgt ggtggggcaa acaaatataa ttgacccctg gattaaagaa aattttgtcc
5221 aagcccccca gggtgagttt actgtctcac ctaaaaattc tcctggtgaa attttagtca
5281 atttggaatt gggacccaaa ctcaacccct atctagacca cctttcacgc atgtacaatt
5341 catatgctgg tggcatagat gtcatggtgg tgttggcggg caacgccttc acagccggca
5401 aggttttaat agcagctatc cccccaaatt tcccagtgga agtggtgtcc gcttcacaag
5461 ccactcaatt cccccatgtg attatagatg ttaggacact tgaccctgtg cggctccccc
5521 tcccggatgt gcgatccacg ttcttccatt acactaatga tactgaacca aagatgaggt
5581 tagtcatttg gctttacacc ccacttagaa ctaatggcag tggtgatgat tctttcaccg
5641 tctctgggcg catactcaca aggccctccc aggactttga gtttgctttc cttatccccc
5701 caacagtgga aacaaagaca accccctttt cagtgccagg cttctcggtg caggaaatgt
5761 ccaactcaag gtggccagct gccatctctg caatggtcgt ccgtgggaat gagccccaag
5821 tcgttcagtt ccagaatggt agggcccact tggatggtat gttgcttggt acgacacctg
5881 tgtcgcccaa ttacatagca tcctaccgag gcatctccac tggcaactct cgttctgctt
5941 cccctgaggc cgacgagagg gccgttggta gctttgatgt gtgggtccgc ctacaagaac
6001 ctgatggcca gccctatgac atctttggta agcagccagc cccaattggc acccctgatt
6061 tcaaggccgt gatagttggc tttgcagcta ggcccctcac atccgggtcc tacgcaaatg
6121 aagcgtatgt taacaccaca gccagtaact acgccccagc cactggtaat atgcgcttca
6181 cagtcaggaa cggcgggacc gggcacacat ctgcaaacaa atattgggag ttcaaatcat
6241 ttggtgttga aggagaaagg cacactggca tccagtacca ggagtatgag cttcccgatt
6301 attctggtca agttgcttcc aaccataatc tggccccccc tgtagcccca cgcatgcctg
6361 gtgagtcact attgcttttc caatcaaata tgcctgtgtg ggacgatggg catggagagt
6421 ccacacccaa gaagattcat tgcctattgc cacaggagtt tattggccat ttctttgaca
6481 agcaagcccc ctctctaggt gatgctgcac tacttaggta tgtcaaccag gagacaaata
6541 gagtgttgtt tgagtgtaaa ctttataggg atggctacat cacagttgct gcatcatcag
6601 gattattaga tttccccttg gatggcttct ttaggtttga ttcttgggtt agttctttct
6661 acattttatc ccccgtggga agcggccaag gccgcagggg tagagtgagg tttcaataat
6721 ggcttctagc attatggcag gtatagcagg cgatgtgcta ggctcagttg tgggtggatt
6781 agttggagcc ggtgctaacg ccataaacca atctgttgaa tttgggtaca accaagtact
6841 gcaatctaat gctttccaac atgataaaga tatgcttgcc tcacaggtgg ccgcaacccg
6901 tcagctacag tcggatttga tcaacttgcg cgagcaggtt cttcgcaagg gtggtttctc
6961 cgacactgat gcggcgcgtg gagccattgg tgcccccatg tcacgtcttg tggattggaa
7021 cggcacaagg ttgtccgccc cgggttccat gcacacaaca tcatactcgg gtcggtttgt
7081 tggcacaacc agacaacaac cccacttcac ccctcctcca caagctaatc atgttagaat
7141 tgatgatgaa gcttcttctg tctcttcctt gcccacagcg gtgacctcag ttcctagttc
7201 taggacagct gattgggttc atagtcaaag gcagctatcc tcctggggtt ctagtgcatc
7261 ccaacattca cagttggaac cctttcatcc aaacgctctg agagtggctt gggggtctac
7321 tccgagttcc tcctccagag cgtccactgt ggatggttca gtcattgatt catggacccc
7381 cgcttttaat ttgaagcatc agcctttctt tgctcgcttt cacccgaggg gtgcttctaa
7441 tgtttagtca acaactcact aatgagtagt tgtgagtttt gtaatctgtg aaatgtagat
7501 tctttaatta attgaattgg cattt
//