Typing tool
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Typing tool
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Complete norovirus genomes
| KC662537 | GII.13 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7447
LOCUS KC662537 7492 bp RNA linear VRL 25-MAY-2013
DEFINITION Norovirus Hu/GII/Hy-718/KOR, complete genome.
ACCESSION KC662537
VERSION KC662537.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Hy-718/KOR
ORGANISM Norovirus Hu/GII/Hy-718/KOR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7492)
AUTHORS Won,Y.-J. and Paik,S.-Y.
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2013) Department of Microbiology, College of
Medicine, The Catholic University of Korea, 505 Banpo-dong,
Seocho-gu, Seoul 137-701, Korea
FEATURES Location/Qualifiers
source 1..7492
/organism="Norovirus Hu/GII/Hy-718/KOR"
/mol_type="genomic RNA"
/isolate="Hu/GII/Hy-718/KOR"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1335448"
/country="South Korea"
/note="genotype: GII"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/note="contains helicase, VPg, 3Cpro, and RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="AGL96586.1"
/translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELITVRQPD
EVNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHRPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKRCQIVYSGCTYTLESDGKGDVKVDRVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PEPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERINFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPHGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDVKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPALYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6713
/gene="ORF2"
CDS 5085..6713
/gene="ORF2"
/note="contains N/S domain and P domain"
/codon_start=1
/product="capsid protein"
/protein_id="AGL96587.1"
/translation="MKMASNDAAPSNDGAASLVPEGINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLPRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVLTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNETNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANNGDNWDQNLLQLTYPNGASYDPTDEVPAPLGTQDFSGMLYG
VLTQDNVNVSTGEAKNAKGIYISTTSGKFTPKIGSIGLHSITEHVHPNQQSRFTPVGV
AVNENTPFQQWVLPHYAGSTRSHTNLGTALAPTFPGEQLLFFRSRVPCVQGLQGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6713..7447
/gene="ORF3"
CDS 6713..7447
/gene="ORF3"
/codon_start=1
/product="ORF3"
/protein_id="AGL96588.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRVQVKSSSNSSQRTAAPSSIRSLSTQSTSVTGST
SLGGPSETSSSSRTADWVRQQRALSPYMHGALRTAYVTPPSSRASSVSSVSTVPKGVL
DSWTPVFNTRRQPLFAHLRKRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacagagac ccccacgacc
181 acccacacca gaactggtca aaaagatccc tcctcccccg cccaacgggg aggatgaacc
241 agtggtttct tatagcgtca aagatggtgt ttccggcttg cctgagctta tcactgtcag
301 gcagccggac gaagtcaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgccaag gaaccactaa ctggaacaat tctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtctagt acttggcgtg cacagaccac ctgctgccat
481 cagccttgcc aaggttgaac taacaccact ctctctgttt tggaggccag tgtacacacc
541 tcagtatctc atttctccag acactcttag gaggctgcac ggagaatcgt tcccctatac
601 ggcctttgac aacaattgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgtagg agaatgatcc agaggacaac tggtttcttt aggccctacc aagactggaa
721 taggaaaccc cttcctacta tggatgattc caagttgaag aaggtagcta acgtattcct
781 gtgcgcgctt tcttcactat tcaccaggcc catcaaagac ataataggga agctgagacc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactgggtg aatacgagct gcaggggcct gaggaccttg cagtggaact
1021 cgtcccaata gtgatggggg ggattggttt ggtgctagga tttaccaaag agaagattgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgc aaagaccttg gtgcatacgg
1141 gctggaaatc ttgaaattag tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgagatcca tcgaggacgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 ccacatgact gcccttctta aagacaaaga tagcttggca acctatatga gaaccctcga
1321 cctcgaggag gagaaggcca ggaagctctc aaccaagtct gcttcacctg acatcgtggg
1381 tacaatcaat gctcttctgg cgagaatcgc cgctgcgcgc tccctggtgc atcgggcgaa
1441 ggaggagctc tctagcagac caagacctgt tgttgtgatg atatcaggca gaccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatt gcagcttccc tcacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg cgttgaccat tgggacgcat acaagggaga
1621 aagagtcgtc ctgtgggacg attatggaat gagtaatccc atccatgatg ccctcagatt
1681 gcaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaataaagg
1741 aaaggtattt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtt aactttgaag catgctcgag gcgcattgac ttcctcgtgt atgcagatgc
1861 ccctgaggtc gaaaaggcaa aacgtgactt cccaggtcaa cctgacatgt ggaagaacgc
1921 ttttagtcct gacttctcgc acataaaact gacgctggct ccgcagggag gtttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaact ctcaccactg gctctctcat
2041 cgcccgagca tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaacttcg accgcaacaa ggtgcttgct tttagacagc ttgctgctga
2161 aaacaagtac gggttaatgg acacaatgag agttggtaga caactcaagg atgtcaggac
2221 tatgccagag ctcaaacagg cactcaagaa tatctcaatc aagaggtgtc agatagtgta
2281 cagtggctgc acctacacgc ttgaatctga tggcaagggt gacgtgaaag ttgatagagt
2341 tcagagcgcc actgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg
2401 tgccagaatt agatactatg tcaagtgtgt tcaggaggcc ctgtactcca tcatccaaat
2461 tgctggtgct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagatctttg
2521 gtccaaacca caggttgaag atacagagga gaccgctagc aaggatgggt gcccagaacc
2581 caaagatgat gaagagtttg tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaagaacaaa tctggccgtg gcaagaagca tacagcattc tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca agagaatcag agaagaaaga aacggcaaat actccataga
2761 agagtacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaggaag aagaagccaa gatccgacaa aggatcttca ggccaacaag
2881 gaaacaacgc aaggaggaga gagcctctct cggcctggtc acaggctctg aaatcagaaa
2941 aagaaaccca gacgatttca agcctaaagg gaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaac gagagaatca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtctc ccccagtctg ttcataacat caactcatgt
3121 cataccccat ggcgcacagg agttctttgg ggtttctatc aaacagattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc aggactgacg tgacaggcat
3241 gatcttggaa gaaggtgcgc ccgaagggac cgtggccaca ttactcatca agaggccaac
3301 tggagaactc atgcccttgg cggccagaat gggaacccat gcaaccatga agatccaagg
3361 gcgcaccgtt ggaggtcaaa tgggcatgct tctaacagga tccaacgcca agagtatgga
3421 tctgggcacc acaccgggtg actgtggttg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cggctgccgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gagggagaag ccacacttga aggtggtgac aacaagggaa cctactgtgg
3601 tgcaccgatc ttaggtccag gtagtgcccc aaaactcagt accaagacta aattttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaaaga
3721 ccccagagtc aagggtggtc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 tactgaaccc aggggcaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtc cttgagcaaa caattgatcc accccaaaaa tggtcattcg cgcaagcatg
3901 cgcgtccctc gacaagacca cctctagtgg ccacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
4021 gtacgaagag ggaaagaaca tgactccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaaaatcaa aaagaggctt ctctggggct cggacctggc
4141 gaccatgatc cggtgtgctc gggcttttgg gggcctgatg gatgaactta aagcacattg
4201 tgtcacactc cccgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 aagacattcc agatacaaat atcactatga tgctgattac tctcggtggg actcaacaca
4321 acagcgggcc gtactagcag cagccttaga aatcatggtt aagttctccc cagaacctca
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggatg taggtgattt
4441 caaaatatca attaatgagg gcctcccctc tggggtaccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ccctctgtgc actttctgag gtcacaaacc tgtcccctga
4561 cattatccag gccaattccc tcttctcctt ctatggtgat gatgaaattg tgagcacaga
4621 cgtaaagctg gacccagaga agctgacagc aaaactcaag gaatacgggc tgaaaccaac
4681 ccgccctgac aagactgagg ggccccttgt tatctctgag gacctgaatg gcttgacttt
4741 cctgcggagg actgtaaccc gcgatccagc tggctggttt ggaaaactgg aacagagttc
4801 aatacttagg caaatgtact ggactagggg ccctaatcat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt aatgtctttg ctgggcgagg ctgccctcca
4921 cggcccagcg ctctacagca aaatcagcaa gttagttatt gcagaactaa aggaaggtgg
4981 catggatttc tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatcaaat gatggtgcag ctagtctcgt accagagggc attaatgaga
5161 ctatgccatt ggaacccgtt gctggtgcat ctattgctgc cccagtggcg ggacaaacca
5221 acataattga cccctggata agaacaaatt ttgtacaagc ccctaatgga gagtttacag
5281 tgtcaccaag aaattcccct ggagaaattt tattaaattt agaattagga ccagatctga
5341 atccttattt ggcccatctt cctagaatgt ataatggtta tgctggaggt gttgaggtgc
5401 aagtgctcct cgctgggaac gcgttcacag caggtaagat attgtttgca gcaatcccac
5461 ctaactttcc tgtagatatg attagcccag ctcaaattac tatgcttccc catttgattg
5521 tagatgttag aactttggaa cctattatga tacccttgcc tgatgttagg aatgtgttct
5581 atcattttaa taatcaacct caacctagaa tgagattagt ggctatgctt tataccccct
5641 tgaggtctaa tggttcaggg gatgatgtcc tcactgtgtc ttgtagagtg ctaactaggc
5701 caactcctga ttttgaattt atctatctgg tgcccccttc tgtagagtcc aaaactaaac
5761 cattcacact accaatatta accatttctg aattgaccaa ctcccggttc cctattccaa
5821 tcgagcaatt gtatacggct ccaaatgaga ccaatgttgt ccagtgtcag aatggcagat
5881 gcaccttaga tggagagctc cagggcacaa cccagctgtt gtcaagtgca gtttgctctt
5941 acaggggcag gactgtggcc aataatgggg ataattggga tcaaaatttg ctccagctga
6001 cctatccaaa tggtgcaagc tatgacccca ctgatgaagt gccggcacca ttgggcactc
6061 aagattttag tgggatgttg tatggagtgt tgacccagga caatgtgaat gtgagcacag
6121 gagaggccaa aaatgctaag gggatataca tatccaccac tagtgggaaa ttcaccccaa
6181 aaattgggtc aattggattg cattcaataa ctgagcacgt gcaccccaac caacagtcgc
6241 ggttcacccc cgttggagtc gccgtgaatg agaacacccc ctttcagcaa tgggttctgc
6301 cacattatgc aggtagtact cgctctcata ccaatttggg cactgctctt gccccgactt
6361 tccctggtga gcaattgctg ttcttcaggt cccgtgtccc atgtgtccaa ggcctacagg
6421 ggcaggatgc gttcatagat tgcctcctgc cccaagagtg ggtgaatcat ttttaccaag
6481 aggcagcccc ttcccaagca gacgtcgccc ttattaggta tgtcaaccct gatactggtc
6541 gtacgctgtt tgaagccaag ttgcatagat caggtttcat cactgtgtca catactggtg
6601 cttaccctct tgtagtcccc ccaaatggtc attttaggtt tgattcttgg gttaatcaat
6661 tttactcact cgcccccatg ggaactggta atgggcgtag aagaatccag taatggcagg
6721 agcatttata gctggtttgg ccggtgacat gctgacttct gctgttggtt cactgacctc
6781 tgcaggagcc aatgccatca atcagaaatt gaattttgat tacaacaaac aactccaaaa
6841 tgcatccttc cagcatgata aggaaatgtt gcaggctcaa attgatgcca caaagaaact
6901 tcaatctgaa atgattgcaa tcaagcatgg ggttttgacc gcgggcggct tttccccagc
6961 tgatgcagct agaggggcag tcaatgcccc aatgactaga gtgctggatt ggtcagggac
7021 acgttactat gctccaaatt ctgtgcaaac tactagctat tctggacaat tcaccccctc
7081 gccagtccac cgggtgcagg tgaaatcttc ttctaattca tctcagcgga ccgcagctcc
7141 aagcagcatc cgtagtctgt caactcaatc aacttctgta acaggctcta cctccctagg
7201 ggggccctct gaaacctcct ctagctctag aacagcagac tgggtacggc aacagagggc
7261 tcttagcccg tacatgcatg gagccctgcg gacggcatat gtcacaccgc cgtcaagcag
7321 ggcctccagt gtgagctctg tctcaacagt gcccaaaggg gttttggact cctggacacc
7381 tgtgtttaac acacgcaggc agccgctatt tgcacacctc aggaagaggg gggagtcaca
7441 agtttagtga aaaggataat caatgtttaa atgtgatttt attttccttg ca
//