Typing tool
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Typing tool
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Complete norovirus genomes
| KC631815 | GII.4 Yerseke | |
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| GII.P4 Yerseke |
ORF1: 4..5097
ORF2: 5078..6700
ORF3: 6700..7506
LOCUS KC631815 7507 bp RNA linear VRL 15-AUG-2013
DEFINITION Norovirus Hu/GII.4/MI002/2011/USA ORF-1, ORF-2, and ORF-3 genes,
complete cds.
ACCESSION KC631815
VERSION KC631815.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/MI002/2011/USA
ORGANISM Norovirus Hu/GII.4/MI002/2011/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7507)
AUTHORS Taube,S., Kolawole,A.O., Hohne,M., Wilkinson,J.E., Handley,S.A.,
Perry,J.W., Thackray,L.B., Akkina,R. and Wobus,C.E.
TITLE A mouse model for human norovirus
JOURNAL MBio 4 (4), e00450-13 (2013)
PUBMED 23860770
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7507)
AUTHORS Taube,S., Kolawole,A.O., Hoehne,M., Handley,S.A., Perry,J.W.,
Thackray,L.B., Akkina,R. and Wobus,C.E.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2013) Microbiology and Immunology, University of
Michigan Medical School, 1150 West Medical Center Dr., Ann Arbor,
MI 48109-5620, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: 454 GS-FLX platform v. 2011
Coverage :: 99.12%
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7507
/organism="Norovirus Hu/GII.4/MI002/2011/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/MI002/2011/USA"
/host="Homo sapiens"
/db_xref="taxon:1354725"
/country="USA"
/collection_date="2006"
CDS 4..5097
/note="nonstructural polyprotein"
/codon_start=1
/product="ORF-1"
/protein_id="AGQ46698.1"
/translation="MASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQ
PPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEES
NTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLA
RVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLR
PLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREMAK
RIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARASG
LLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMPE
LKQALKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSEDGCPK
PKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
VTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
SAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRG
KPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDST
QQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREY
GLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQGSILRQMYWTRGSNH
EDPSETMIPHSQRPVQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5078..6700
/note="VP1"
/codon_start=1
/product="ORF-2"
/protein_id="AGQ46696.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6700..7506
/note="VP2"
/codon_start=1
/product="ORF-3"
/protein_id="AGQ46697.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMIKVKQAMLLEGGFSETDAARGAIS
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSTPS
NSSTATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcta acagcaacaa cgacaccgca
61 aaatcttcaa gtgacggagt gctttctagc atggctgtca cttttaaacg ggccctcggg
121 gcgcggccta aacagcctcc cccgagggaa ataccacaaa gacccccacg accacctact
181 ccagaactgg ttaaaaatat tccccctccc ccgcccaacg gagaggatga aatagtggtt
241 tcttatagtg tcaaagatgg tgtttccggt ttacctgacc tttccaccgt caggcaaccg
301 gaagaatcta acacggcctt cagtgtccct ccactcaatc agagggagaa tagagatgct
361 aaggagccac tgactggaac aattctggaa atgtgggatg gagaaatcta ccattatggc
421 ctgtatgtgg agcgaggtct tgtactaggt gtgcacaaac caccagctgc cattagcctc
481 gctagggtcg agctagcacc actctccttg tactggagac ctgtgtacac tccccagtac
541 ctcatctctc cagacactct caagaaatta cacggagaaa cgttccccta cacagccttt
601 gataacaatt gttatgcctt ttgttgctgg gtcctggacc taaatgactc gtggctgagc
661 aggagaatga tccagagaac aactggtttc ttcaggccct accaagattg gaataggaaa
721 cccctcccca ctatggatga ctccaaatta aagaaggtag ctaacatatt cctgtgtgct
781 ctgtcttcgc tattcaccag gcccataaaa gatataatag ggaagctaag gcctcttaac
841 atcctcaaca tcttagcctc atgtgattgg acttttgcag gcatagtgga gtccctgata
901 ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgattgcc
961 cccttactcg gtgactacga gctacaagga cctgaggacc ttgcagtgga gctcgtcccc
1021 gtagtgatgg ggggaattgg tttggtgcta ggattcacca aagagaagat tgggaaaatg
1081 ttgtcatctg ctgcatccac cttaagagct tgtaaagacc ttggtgcata tgggctagag
1141 atcctaaagt tggtcatgaa gtggttcttc ccgaagaagg aggaagcaaa tgaattggct
1201 atagtgagat ctatcgagga tgcagtcctg gatctcgagg caattgaaaa caaccatatg
1261 accaccttgc tcaaagacaa agacagtctg gcaacctata tgagaaccct tgaccttgag
1321 gaggagaaag ccaggaaact ctcaaccaag tctgcctcac ctgacatcgt gggcacaatc
1381 aacgcccttc tggcgagaat cgctgctgca cgctctctgg tgcatcgagc gaaggaggaa
1441 ctttccagca gaccaagacc tgtagtattg atgatatcag gcagaccagg aatagggaag
1501 acccaccttg ctagggaaat ggctaagaga atcgcagcct cccttacagg agaccagcgt
1561 gtaggcctcg tcccacgcaa tggcgtcgac cactgggatg cgtacaaggg ggagagggtc
1621 gtcctatggg acgattatgg gatgagcaat cccattcacg atgccctcag gttgcaagaa
1681 ctcgctgaca cttgccccct cactctaaac tgtgacagga ttgagaacaa aggaaaggtc
1741 tttgacagcg atgtcatcat tatcaccact aatctggcca acccagcacc actggactat
1801 gtcaactttg aagcatgctc gaggcgcatc gacttcctcg tgtatgcaga agctcctgaa
1861 gtcgaaaagg cgaagcgtga cttcccaggc caacctgaca tgtggaagaa cgccttcagt
1921 tctgatttct cacacataaa actaacattg gccccacagg gtggcttcga caagaacggg
1981 aacaccccac acggaagggg cgtcatgaag actctcacca ctggctccct tattgcccgg
2041 gcatcaggac tactccatga gaggttagat gaatttgaac tacagggccc aactctcact
2101 accttcaatt tcgatcgcaa taaagtgctt gcctttagac aacttgctgc tgaaaacaaa
2161 tatgggttga tggacacaat gagagttggg agacagctca aggatgtcag aaccatgcca
2221 gaactcaaac aagcactcaa gaacatttca atcaagaagt gccagatagt gtatagtggt
2281 tgcacctata tacttgagtc tgatggcaag ggcaatgtga aagttgatag agttcagagc
2341 gcctccgtgc agaccaacaa tgagctgact ggtgccctgc accatttgag gtgcgccagg
2401 atcagatact atgtcaagtg tgtccaggag gccctgtatt ccatcatcca aattgctggg
2461 gctgcgtttg tcaccacgcg catcgtcaag cgcatgaaca tacaagacct atggtccaag
2521 ccacaagtgg aaaacacaga ggagaccacc agtgaggacg ggtgcccaaa acccaaagat
2581 aatgaggagt ttgtcatttc atccgacgac atcaaaactg agggtaagaa agggaagaac
2641 aagactggcc gcggcaagaa gcacacagcc ttttcaagca aaggtctcag tgatgaagag
2701 tacgatgagt acaagaggat tagagaagaa aggaatggca agtactccat agaagagtac
2761 cttcaggaca gggacaaata ctatgaggag gtggccattg ccagggcgac tgaggaagac
2821 ttctgtgaag aggaggaggc caagatccgg caaaggatct tcaggccaac aaggaaacaa
2881 cgcaaggagg aaagagcttc tctcggtctg gtcacaggtt ccgaaattag gaaaagaaac
2941 ccagatgatt tcaaacccaa ggggaaactg tgggctgacg atgacagaag tgtggactat
3001 aatgagaaac tcagctttga ggccccacca agcatctggt cgaggatagt taactttggt
3061 tcaggttggg gattctgggt ctcccccagt ctgttcataa catcaaccca tgtcataccc
3121 cagggcgcaa aggagttctt tggagtcccc atcaaacaaa ttcaggtaca caagtcaggc
3181 gagttctgtc gcttgagatt cccaaaacca atcaggactg atgtgacagg catgatctta
3241 gaagaaggcg cacccgaggg caccgtggtc acactactca tcaaaaggtc cactggggaa
3301 ctcatgcccc tagcagctag gatggggacc catgcaacca tgaagatcca agggcgcacc
3361 gttggaggcc aaatgggcat gcttctgaca ggatccaacg ccaaaagcat ggatctgggt
3421 actacaccag gtgattgtgg ctgtccctac atctacaaga gaggaaatga ctatgtggtc
3481 attggagtcc acacggctgc cgctcgtggg ggaaacactg tcatatgtgc cacccagggg
3541 agtgagggag aggctacact tgaaggtggt gacaacaagg ggacatactg tggtgcacca
3601 atcctaggcc cagggagtgc cccaaaactt agcaccaaga ccaaattctg gagatcgtcc
3661 acggcatcac tcccacctgg cacctatgaa ccagcctatc ttggtggcaa ggaccctaga
3721 gtcaagggtg gcccttcact gcagcaagtt atgagggaac agttgaagcc attcacagag
3781 cccaggggca agccaccaaa gccaagtgtg ttagaagctg ccaagaagac catcatcaat
3841 gtccttgagc aaacaattga tccacctgag aaatggtcat tcgcacaagc ttgcgcgtcc
3901 cttgacaaga ccacttccag tggccatccg caccacatgc ggaaaaacga ctgctggaac
3961 ggggagtcct tcacaggcaa gctagcagac caggcttcca aggccaatct gatgtttgaa
4021 gaagggaaga acatgacccc agtctacaca gctgcgctca aggatgaatt agttaaaacc
4081 gacaaaattt atggtaagat caagaagagg cttctctggg gctcggactt ggcgaccatg
4141 atccggtgtg ctcgagcatt cggaggccta atggatgagc tcaaagcaca ctgtgtcaca
4201 cttcccatta gagttggtat gaatatgaat gaggatggcc ccatcatctt cgagaggcat
4261 tccaggtaca catatcacta tgatgctgat tactctcgat gggattcaac acaacagaga
4321 gccgtgttgg cagcagctct agaaatcatg gttaaattct ccccagaacc acatttggct
4381 caggtggtcg cggaagacct tctttctcct agcgtggtgg acgtgggcga cttcacaata
4441 tcaatcaacg agggtcttcc ctctggggtg ccctgcacct cccaatggaa ctccatcgcc
4501 cactggcttc tcactctttg tgcgctctct gaagttacaa acttgtcccc tgataccata
4561 caggctaatt ccctcttctc tttttatggt gatgatgaaa ttgttagcac agacataaaa
4621 ttggacccag agaaattgac agcaaagctc agggaatatg ggttaaaacc aacccgtcct
4681 gacaaaactg aaggacccct tgtcatctct gaagacttga atggcctgac cttcctgcgg
4741 agaactgtga cccgcgatcc agctggttgg tttggaaaac tggagcaggg ttcaatactc
4801 aggcaaatgt actggactag gggctccaac catgaagacc catctgaaac aatgattcca
4861 cactcccaaa gacccgtaca attgatgtcc ctactggggg aggccgctct tcacggccca
4921 gcattctaca gcaaaatcag caagttagtc attgcagagc taaaagaagg tggcatggat
4981 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tcttagcacg
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
5101 caacccatct gatgggtcca cagccaacct cgtcccagag gtcaacaatg aggttatggc
5161 tttggagccc gttgttggtg ccgctattgc ggcacctgta gcgggccaac aaaatgtaat
5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtatcccc
5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatt tgaatcccta
5341 cctttcccat ttggccagaa tgtacaatag ttatgcaggt ggttttgaag tgcaggtaat
5401 cctcgcgggg aacgcgttca ccgccggaaa aatcatattt gcagcagtcc caccaaattt
5461 cccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatataa tagtagatgt
5521 taggcaactg gaacctgtgt tgatcccctt acccgatgtt aggaataatt tctatcacta
5581 caatcaatca aatgacccca ccatcaaatt gatagcaatg ttgtatacac cacttagggc
5641 taataatgct ggggacgatg tcttcacagt ttcttgtcgg gttctcacga gaccatcccc
5701 cgattttgat ttcatatttt tagtgccacc cacagttgag tcaagaacta aaccattctc
5761 tgtcccaatt ttaactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgttcaacca caaaatggca ggtgcacgac
5881 tgatggcgtg ctcctaggta ctacccaact gtctcctgtc aacatctgca ccttcagagg
5941 ggatgtcacc cacattgcag gtactcaaga atacacaatg aatctggcct cccaaaactg
6001 gaacaattat gatccaacag aagaaatccc agcccctctg ggaactccag atttcgtggg
6061 taagatccaa ggcgtgctca cccaaaccac aaggagggat ggctcgaccc gcggtcacaa
6121 agccacagtg agcactggaa gtgtccactt caccccaaag ctgggcagaa ttcaattctc
6181 cactgataca agcaatgatt ttgaaactgg ccaaaacacg agattcaccc cagtcggtgt
6241 tgtccaggat ggtagcacca cccaccaaaa tgaaccccaa caatgggtac tcccaaatta
6301 ttcaggtaga gatagccaca atgtgcacct agcccctgct gtggccccct cttttccggg
6361 tgagcaactt cttttcttca ggtccactat gcccggatgc agcgggtatc ccaacatgaa
6421 tttggattgc ctactccccc aggagtgggt gcagcacttc taccaagagg cagccccagc
6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttctgtttga
6541 gtgtaagctt cataaatcag gctatgtcac agtggctcac actggccaac atgatttagt
6601 tatccccccc aatggctatt ttaggtttga ttcctgggtc aaccagttct acacacttgc
6661 ccccatggga aatggaacgg ggcgtagacg tgcattataa tggctggagc tttctttgct
6721 ggattggcat ctgatgtcct tggctctgga cttggttccc taatcaatgc tggggctggg
6781 gccatcaacc aaaaagttga atttgaaaat aacagaaaat tgcaacaagc ttccttccaa
6841 tttagcagca acctacaaca ggcttccttt caacatgata aagagatgct ccaagcacaa
6901 attgaggcca ccaaaaagtt gcaacaggaa atgataaaag ttaaacaggc aatgctccta
6961 gagggtgggt tctctgagac agatgcagcc cgtggggcaa tcagcgcccc catgacaaag
7021 actttggact ggagcgggac aaggtactgg gctcccgatg ctaggactac aacatacaat
7081 gcaggccgct tttccacccc tcaaccctcg ggggcactgc caggaagaac taatcttagg
7141 gctgctgtcc ccgcctgggg ctcctccagt acaccttcta actcttctac tgctacttct
7201 gtgtactcaa atcaaactgc ttcaacgaga cttggttcta cagctggttc tggtaccagt
7261 gtctcgagct tcccgtcaac tgcaaggact aggagctggg ttgaggatca aaataggaat
7321 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga
7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaag ttttggactc ctggactggc
7441 gctttcaaca cgcgcaggca gcctctcttc gctcacattc gtaagcgagg ggagtcacgg
7501 gcgtaag
//