Typing tool
|
Complete norovirus genomes
KC631814 | GII.4 Yerseke | ||
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GII.P4 Yerseke |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS KC631814 7575 bp RNA linear VRL 15-AUG-2013 DEFINITION Norovirus Hu/GII.4/MI001/2011/USA ORF-1, ORF-2, and ORF-3 genes, complete cds. ACCESSION KC631814 VERSION KC631814.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/MI001/2011/USA ORGANISM Norovirus Hu/GII.4/MI001/2011/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7575) AUTHORS Taube,S., Kolawole,A.O., Hohne,M., Wilkinson,J.E., Handley,S.A., Perry,J.W., Thackray,L.B., Akkina,R. and Wobus,C.E. TITLE A mouse model for human norovirus JOURNAL MBio 4 (4), e00450-13 (2013) PUBMED 23860770 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7575) AUTHORS Taube,S., Kolawole,A.O., Hoehne,M., Handley,S.A., Perry,J.W., Thackray,L.B., Akkina,R. and Wobus,C.E. TITLE Direct Submission JOURNAL Submitted (15-FEB-2013) Microbiology and Immunology, University of Michigan Medical School, 1150 West Medical Center Dr., Ann Arbor, MI 48109-5620, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7575 /organism="Norovirus Hu/GII.4/MI001/2011/USA" /mol_type="genomic RNA" /strain="Hu/GII.4/MI001/2011/USA" /host="Homo sapiens" /db_xref="taxon:1354724" /lab_host="Mus musculus" /country="USA" /collection_date="2011" /PCR_primers="fwd_seq: gtgaatgaagatggcgtctaacgacgcttccgct, rev_seq: taaaaaaaaaaaaaaa" /note="genotype: GII.4" CDS 5..5104 /note="nonstructural polyprotein" /codon_start=1 /product="ORF-1" /protein_id="AGQ46693.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKQALKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSEDGC PKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQGSILRQMYWTRGS NHEDPSETMIPHSQRPVQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="VP1" /codon_start=1 /product="ORF-2" /protein_id="AGQ46694.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="VP2" /codon_start=1 /product="ORF-3" /protein_id="AGQ46695.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMIKVKQAMLLEGGFSETDAARGAIS APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSTPS NSSTATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgggc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtta aaaatattcc ccctcccccg cccaacggag aggatgaaat 241 agtggtttct tatagtgtca aagatggtgt ttccggttta cctgaccttt ccaccgtcag 301 gcaaccggaa gaatctaaca cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat 481 tagcctcgct agggtcgagc tagcaccact ctccttgtac tggagacctg tgtacactcc 541 ccagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccctacac 601 agcctttgat aacaattgtt atgccttttg ttgctgggtc ctggacctaa atgactcgtg 661 gctgagcagg agaatgatcc agagaacaac tggtttcttc aggccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caaattaaag aaggtagcta acatattcct 781 gtgtgctctg tcttcgctat tcaccaggcc cataaaagat ataataggga agctaaggcc 841 tcttaacatc ctcaacatct tagcctcatg tgattggact tttgcaggca tagtggagtc 901 cctgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgagct acaaggacct gaggaccttg cagtggagct 1021 cgtccccgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaggagg aagcaaatga 1201 attggctata gtgagatcta tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctatatga gaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcctcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgc tctctggtgc atcgagcgaa 1441 ggaggaactt tccagcagac caagacctgt agtattgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaaatggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctggtcc cacgcaatgg cgtcgaccac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg attatgggat gagcaatccc attcacgatg ccctcaggtt 1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 tcctgaagtc gaaaaggcga agcgtgactt cccaggccaa cctgacatgt ggaagaacgc 1921 cttcagttct gatttctcac acataaaact aacattggcc ccacagggtg gcttcgacaa 1981 gaacgggaac accccacacg gaaggggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcaggactac tccatgagag gttagatgaa tttgaactac agggcccaac 2101 tctcactacc ttcaatttcg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgag agttgggaga cagctcaagg atgtcagaac 2221 catgccagaa ctcaaacaag cactcaagaa catttcaatc aagaagtgcc agatagtgta 2281 tagtggttgc acctatatac ttgagtctga tggcaagggc aatgtgaaag ttgatagagt 2341 tcagagcgcc tccgtgcaga ccaacaatga gctgactggt gccctgcacc atttgaggtg 2401 cgccaggatc agatactatg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat 2461 tgctggggct gcgtttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa acacagagga gaccaccagt gaggacgggt gcccaaaacc 2581 caaagataat gaggagtttg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgcg gcaagaagca cacagccttt tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtctggtc acaggttccg aaattaggaa 2941 aagaaaccca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactataat gagaaactca gctttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgag ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacaggcat 3241 gatcttagaa gaaggcgcac ccgagggcac cgtggtcaca ctactcatca aaaggtccac 3301 tggggaactc atgcccctag cagctaggat ggggacccat gcaaccatga agatccaagg 3361 gcgcaccgtt ggaggccaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctgggtact acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aacaagggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccacg gcatcactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga 3721 ccctagagtc aagggtggcc cttcactgca gcaagttatg agggaacagt tgaagccatt 3781 cacagagccc aggggcaagc caccaaagcc aagtgtgtta gaagctgcca agaagaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct agcagaccag gcttccaagg ccaatctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgctcaagg atgaattagt 4081 taaaaccgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgagctca aagcacactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcattcc aggtacacat atcactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca 4381 tttggctcag gtggtcgcgg aagaccttct ttctcctagc gtggtggacg tgggcgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctttgtgc gctctctgaa gttacaaact tgtcccctga 4561 taccatacag gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaga aattgacagc aaagctcagg gaatatgggt taaaaccaac 4681 ccgtcctgac aaaactgaag gaccccttgt catctctgaa gacttgaatg gcctgacctt 4741 cctgcggaga actgtgaccc gcgatccagc tggttggttt ggaaaactgg agcagggttc 4801 aatactcagg caaatgtact ggactagggg ctccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccgtacaatt gatgtcccta ctgggggagg ccgctcttca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 tagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatagtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 atcactacaa tcaatcaaat gaccccacca tcaaattgat agcaatgttg tatacaccac 5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac 5701 catcccccga ttttgatttc atatttttag tgccacccac agttgagtca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcaggt 5881 gcacgactga tggcgtgctc ctaggtacta cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggta ctcaagaata cacaatgaat ctggcctccc 6001 aaaactggaa caattatgat ccaacagaag aaatcccagc ccctctggga actccagatt 6061 tcgtgggtaa gatccaaggc gtgctcaccc aaaccacaag gagggatggc tcgacccgcg 6121 gtcacaaagc cacagtgagc actggaagtg tccacttcac cccaaagctg ggcagaattc 6181 aattctccac tgatacaagc aatgattttg aaactggcca aaacacgaga ttcaccccag 6241 tcggtgttgt ccaggatggt agcaccaccc accaaaatga accccaacaa tgggtactcc 6301 caaattattc aggtagagat agccacaatg tgcacctagc ccctgctgtg gccccctctt 6361 ttccgggtga gcaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca 6421 acatgaattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc 6541 tgtttgagtg taagcttcat aaatcaggct atgtcacagt ggctcacact ggccaacatg 6601 atttagttat cccccccaat ggctatttta ggtttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg ataaaagtta aacaggcaat 6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcaatca gcgcccccat 7021 gacaaagact ttggactgga gcgggacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccacccctca accctcgggg gcactgccag gaagaactaa 7141 tcttagggct gctgtccccg cctggggctc ctccagtaca ccttctaact cttctactgc 7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcttcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggcg taatgtgaaa agacaaaatt gactatcttt ctttttcttt agtgtctttt 7561 aaaaaaaaaa aaaaa //