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Typing tool
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Complete norovirus genomes
KC464499 | GII.12 | ![]() |
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GII.P33 |
ORF1: 1..5106 ORF2: 5087..6694 ORF3: 6694..7485LOCUS KC464499 7514 bp RNA linear VRL 19-DEC-2013 DEFINITION Norovirus Hu/GII.12/CGMH41/2010/TW, complete genome. ACCESSION KC464499 VERSION KC464499.1 KEYWORDS . SOURCE Norovirus Hu/GII.12/CGMH41/2010/TW ORGANISM Norovirus Hu/GII.12/CGMH41/2010/TW Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7514) AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Chiu,C.H. and Chen,S.Y. TITLE Clinical relevance and genotypes of circulating noroviruses in northern Taiwan, 2006-2011 JOURNAL J. Med. Virol. 86 (2), 335-346 (2014) PUBMED 24009100 REFERENCE 2 (bases 1 to 7514) AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Huang,W.L., Chao,H.C., Chen,S.Y. and Chiu,C.H. TITLE Direct Submission JOURNAL Submitted (08-JAN-2013) Chang Gung University, Graduate Institute of Clinical Medical Sciences, No. 259, Wenhua 1st Rd., Guishan Township, Taoyuan County 333, Taiwan (R.O.C.) COMMENT ##Assembly-Data-START## Assembly Method :: Vector NTi v. 10 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7514 /organism="Norovirus Hu/GII.12/CGMH41/2010/TW" /mol_type="genomic RNA" /isolate="Hu/GII.12/CGMH41/2010/TW" /isolation_source="fecal" /host="Homo sapiens" /db_xref="taxon:1380576" /geo_loc_name="Taiwan" /collection_date="14-Jan-2010" /note="genotype: GII.12" CDS 1..5106 /codon_start=1 /product="ORF1" /protein_id="AGT39199.1" /translation="MKMASNDASAAAAAISNNDIAKSSSDGVLSSMAVTFKRALGARP KQPPPRETTQKQKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKEGVSGLPELSTVRQ PDETNTAFSVPPLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAA ISLAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLN DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDII GKLRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKL STKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAR DLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELAD TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDV EKAKRDFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVA RASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNVK TVSELKQALKNIAIRRCQIVYSGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHH LRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKD GCPKPKDEEEFVISSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER NGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLG LITGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWV SPSLFVTSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAP EGTVATLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTP GDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPI LGPGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFT EPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNE HWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGS DLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSR WDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVP CTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAK LKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR GPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPR QEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5087..6694 /note="viral capsid protein" /codon_start=1 /product="VP1" /protein_id="AGT39200.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQITNINGTPFGPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFYRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 6694..7485 /note="minor capsid protein" /codon_start=1 /product="VP2" /protein_id="AGT39201.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL ISGSSNPSSLARSSSSISSQSTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSASTHSINTHRQPLFAHLRRRGESQV" ORIGIN 1 atgaagatgg cctctaacga cgcttccgct gccgctgctg ctatcagcaa caacgacatc 61 gcaaaatctt caagtgacgg agtactaagt agtatggctg tcacttttaa acgagccctc 121 ggggcccggc ctaaacagcc gcccccgagg gaaacaacac aaaaacaaaa acctccacga 181 ccgcccaccc cggagttaat caaaaagatt ccacctcccc cgcccaacgg ggaggacgat 241 atagtggtat cctacagtgc caaagagggg gtctccggcc tgcctgagct atccaccgtc 301 aggcagccgg atgagacaaa cacagcattt agtgtccccc cactcaacca gagggaaaac 361 agggatgcta aagaaccgct gcctggcacc atattggaaa tgtgggacgg agagatctac 421 cactacggct tgtacgtgga gcggggtttg gtgcttgggg tgcacaaacc accagcggct 481 attagcctcg caaaggttga actaacacca ctgtctctgt actggagacc agtgtacacc 541 cctcagtacc tcatatcccc ggaaacactc aaaaagctac atggagagac attcccttac 601 acggcctttg ataacaactg ttacgccttc tgttgttggg tcttggatct aaacgactct 661 tggctcagca ggaggatgat tcagagaaca actggcttct tcagacccta ccaggactgg 721 aacaggaaac ctctccccac tatggatgat tccaaattga aaaaggtggc taatatagtc 781 ctgtgtgctt tgtcatcact attcaccagg cccattaagg acataatagg aaaactaagg 841 cccttaaaca tactcaacat actagcttcc tgcgactgga ctttcgcagg agtagtggaa 901 tccctaattc tccttgcaga actcttcgga gttttctgga cacccccaga tgtgtctgcg 961 atgatcgccc ccttactagg tgactacgaa ctacagggac ctgaagacct cgctgtagaa 1021 ctcgtaccag tagtaatggg ggggataggt ttggttctag gtttcaccaa ggagaagatt 1081 ggcaagatgc tgtcatccgc cgcgtccacc cttagagctt gtaaagacct tggagcatat 1141 gggttagaaa tcctgaagtt ggtcatgaaa tggttcttcc cgaagaaaga cgaggcaaat 1201 gaacttgcaa tggtgagatc cattgaggac gcagtgctgg acctcgaagc aattgaaaac 1261 aatcacatga ccaccctgct caaagacaaa gacagtttgg caacctacat gaagactctg 1321 gatcttgaag aggagaaagc taggaaactc tccaccaaat ccgcttctcc tgatattgtg 1381 ggcacaatca attcacttct ggcacggatt gcagctgccc gttccctggt gcaccgggca 1441 aaagaagagc tttccagtag gccaagaccc gttgttgtta tgatatcagg aaagccagga 1501 atagggaaga cccatcttgc cagagatttg gcaaagaaag ttgcagccac cctcacagga 1561 gaccagaggg tgggcctcat cccacggaat ggtgtcgacc attgggatgc atacaaaggt 1621 gagagagtcg tcctttggga tgactatgga atgagtaacc ccattcatga cgcccttagg 1681 ctacaagaac tcgctgacac ttgcccccta acattaaatt gtgatagaat tgagaacaaa 1741 ggaaaggttt ttgacagtga tgccataatt attacaacta atttggctaa cccggcacca 1801 ctggactatg ttaactttga agcatgttcg aggcgtatcg acttccttgt gtacgctgat 1861 gcccccgacg ttgaaaaggc aaaacgcgac ttcccagggc aacctgacat gtggaaggat 1921 gcttttagac ctgacttctc acacataaaa ttaatgttgg ctcctcaggg tggttttgat 1981 aagaacggca acaccccaca tggaaaaggc gtcatgaaaa ccctcacatc tggctccctc 2041 gttgcccgtg cttcaggact cctccacgaa agactggacg agtacgagtt gcaagggcca 2101 acacccacaa ccttcaattt cgaccaaaac aaggtgttcg cctttaggca gctcgccgct 2161 gaaaataaat acgggctgat ggacaccatg agagtgggaa gccagctcaa gaatgtcaaa 2221 actgtgtcag agctcaaaca ggcactcaag aacattgcaa ttagaaggtg ccagatagtc 2281 tacagtggtc tcacatactc acttgaatct gatggcaaag gtaatgtaag ggttgagaag 2341 gtgcaaagtc cagctgtgca gaccaacaat gagctaactg gcgcactaca ccatctgagg 2401 tgcgctagga ttagatatta tgttaagtgt gttcaggaag ctttgtattc catcatccaa 2461 attgctgggg ccgcgtttgt caccacgcgc attgcaaagc gcatgaacat acaaaacctc 2521 tggtccagac cacaggtgga ggatgaggaa gagaccacca gcaaagacgg atgcccaaaa 2581 ccaaaggatg aggaggagtt tgtcatctcg tctgaagaca tcaaagtcga aggcaagaag 2641 ggaaagaaca agtctggccg tggcaagaaa cacacagcct tttcgagtaa aggtcttagt 2701 gatgaggagt acgatgagta taaaagaatt agagaagaaa gaaatggtaa gtactccata 2761 gaagaatacc tccaggacag agacaagtac tatgaggagg tggccatagc cagggctact 2821 gaagaggact tctgtgagga agaagaagcc aagattcgtc agaggatttt cagaccaaca 2881 aggaaacaac gcaaggagga gagggcttca ctcggactga ttacaggctc agaaatcagg 2941 aaaaggaacc cggatgactt caaacccaaa ggaaaactgt gggctgatga tgacaggagt 3001 gtcgattaca atgaaaagct cagttttgag gcccccccaa gcatctggtc gagaatagtc 3061 aactttggat caggttgggg cttctgggtc tcaccaagcc tttttgtaac atccacccat 3121 gtcatacctc aaggggcaca agaatttttc ggtgtttcca tcaaacagat ccaaattcac 3181 aagtcgggtg aattctgccg actaagattc ccaaaaccaa ttagaactga tgtgacaggt 3241 atgatcctgg aggagggggc ccctgaaggg actgtggcca cactgctcat aaagaggcca 3301 actggagagc tgatgccact ggcagctaga atgggtaccc atgcaactat gaggatccag 3361 ggtcgaactg tcggggggca gatggggatg ctcctgacgg gatccaacgc caagagcatg 3421 gatttgggta ccacaccagg tgactgtgga tgcccatata tatacaaaag aggaaatgac 3481 tacgtagtca tcggggtcca cacagctgcc gcccgcggag ggaacactgt catctgtgca 3541 acacaaggaa gtgagggcga ggctgtgctt gaaggtggcg acaacaaagg cacctattgt 3601 ggcgccccaa tcctaggtcc aggaaatgcc cccaaactca gtactaaaac caaattctgg 3661 aggtcctcaa cagcaccact cccacctggc acatatgaac cagcttacct cggaggcaaa 3721 gaccccagag taaaaggtgg cccctcatta cagcaagtta tgagagacca actgaaacca 3781 tttacagaac ccagaggtaa gccaccaaag cccagtgtac tagaagcagc caaaaagaca 3841 atcattaatg tccttgagca aacaatagac ccaccccaaa aatggacgtt cgcacaggcg 3901 tgcgcatccc tcgacaaaac aacctctagt ggctacccgc accacgtgcg gaagaatgaa 3961 cattggaatg gggaatcttt cacaggaaaa ttggctgatc aggcttcaaa agctaacctg 4021 atgtttgagg aaggtaaaca catgacacca gtctacacag gagccctcaa ggatgagtta 4081 gtcaaaactg ataaaatata tggcaagatc aagaagaggt tgctatgggg ttcagacctg 4141 gcaaccatga tccgctgcgc tcgagcgttc ggagggttaa tggatgaact caaggctcac 4201 tgtgtcacac tccccatcag ggtagggatg aacatgaatg aggatggccc catcattttt 4261 gagaaacact ctagatacac ctaccattat gatgcagact actctcggtg ggactcaaca 4321 cagcagagag ctgttttagc tgcagccctg gagatcatgg taaaattttc cccagaacca 4381 cacctggccc agatcgttgc agaggatctc ctatctccca gcgtgatgga cgtgggcgat 4441 ttcaaaatat caatcactga aggactcccc tctggggtgc cttgcacctc acaatggaat 4501 tctattgctc attggctcct cacgctttgt gcactctctg aggtaacaga tttgtctcct 4561 gacatcatcc aagcaaactc actcttctct ttctatggtg acgatgaaat tgtgagcaca 4621 gacatcaaat tagatccaga aaagctgaca gctaaactaa aagagtatgg tctcaagcca 4681 acccgtcctg acaagactga agggcctctg gtcatttctg aggacttaga tggtctgacc 4741 ttcttacgga ggactgtgac ccgtgaccca gcaggttggt ttggaaaatt ggaacaaagc 4801 tcaatactta gacagatgta ttggaccagg ggccccaacc atgaggatcc cgctgaaaca 4861 atgataccac actcccaaag acccatacag ttgatgtccc tattaggtga agctgcatta 4921 catggcccat cattctacag caaaatcagc aaattggtca tctcagagtt aaaagagggt 4981 ggcatggact tttacgtgcc aaggcaagag ccaatgtttc gatggatgag gttctcagac 5041 ttgagcacgt gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc 5101 gaatgacgcc gctccatcta atgatggtgc agccggtctc gtaccagagg tcaacaatga 5161 gaccatggca cttgaaccgg tggctggggc ttcaatagcc gccccactca ccggtcaaaa 5221 taatgttata gacccctgga ttagattaaa ctttgtgcaa gctcccaatg gagagtttac 5281 agtttcaccc cgcaattcgc ctggggaagt cctactaaac ttggaattag gccctgaact 5341 aaatccatat ttggcacacc tttccagaat gtacaatggt tatgcaggtg gagttgaggt 5401 gcaagtacta ctggctggga acgcgttcac ggctggaaaa ctggtattcg ccgcagttcc 5461 ccctcatttt ccattagaaa acataagccc tggccaaata accatgttcc ctcatgtaat 5521 tattgatgtt aggactttag aaccagtcct attgcctctt ccagatgtta ggaacaattt 5581 cttccactac aatcagcaaa acgaaccgag gatgaggctt gtggcaatgc tctatacccc 5641 ccttaggtct aatggttctg gtgatgatgt atttactgtc tcctgtagag tgcttactcg 5701 accctctcct gattttgatt tcaattattt ggtaccccct acagttgaat ctaaaactaa 5761 acccttcaca ctccccatct taaccatagg ggagttaacc aattccagat tccctgtgcc 5821 tatagatgaa ctctacacta gccccaatga gagtttggtg gtacaacccc agaacgggag 5881 atgcgcgctg gatggggagt tgcagggtac tactcagctc ctccccacgg cgatctgctc 5941 gttcaggggt cggattaatc agaaagtgag tggagagaac catgtttgga atatgcaaat 6001 caccaacatt aacggaaccc cttttggtcc aacagaggat gttccagctc ctctaggtac 6061 accagacttt tctggcaagc tctttggcgt cctaagccag agggaccatg ataatgcctg 6121 taggagccat gatgcagtga ttgcaactaa ttctgctaaa tttaccccaa aattgggcgc 6181 tatacaaatt ggcacatggg aacaagatga tgtacacatc aaccaaccca ccaaatttac 6241 tccagttggc ttgtttgaaa gtgaaggttt taatcagtgg acactcccta attattctgg 6301 agccttaaca ctcaacatgg ggttggcccc ccctgtggcc cccacatttc ctggcgagca 6361 aattcttttc tacagatccc acattcctct taaaggaggt gtggcagacc cagttattga 6421 ttgtctcttg ccccaagagt ggatccaaca cctttatcag gagtcagccc cttcacaaac 6481 agatgtagca ctgatcagat tcacaaatcc agacacaggg cgtgtcctat ttgaagcaaa 6541 attgcacagg agtggctaca tcacagtggc caacactggt agcagaccaa ttgtggtgcc 6601 agctaatggt tacttcagat ttgactcttg ggttaatcag ttttattctc tcgcccccat 6661 gggaactggg aatgggcgca gaagggtgca gtaatggctg gagctttcat agcaggtctt 6721 gctggtgata tagtcaccaa tggtattggc tcactcgtga acgctggggc caatgcaata 6781 aaccaaaaag tagactttga aaacaataag caactacagc aggcatcctt caatcatgac 6841 aaagagatgc tgcaagctca aattcaagcc accaaacagc tacaggctga tatgattgca 6901 atcagacaag gggtgttgac cgcgggcggc ttctccccca ctgatgcagc aagaggtgca 6961 gtcaacgcac ccatgacaca ggtcttggac tggaacggga ctagacattg ggcccccgga 7021 gccatgaaaa caactgcttt ctccggtggg ttcaccagtg cttctcatgc caggaccgtt 7081 gacctgacta ggaaaacatc agccacacca gcctctatgc ctgtctctag gcccagttct 7141 actgcctcta ctgtttccac ccgttctacc ttgattagtg gatcctctaa tccttcttct 7201 ctagctagga gttcttccag tatttcttcc caatctactt cctcatcctc tcggactagt 7261 gattgggtac gtagccaaaa cagagcactg gagccttata tgagcggggc gctgcgtaca 7321 gcctacgtga cacctccatc cagtagggct tctagcaatg gcacagtctc aaccgtgcca 7381 aaagaggttt tggactcctg gacatctgca tcaacacact ctatcaacac acacagacaa 7441 ccgctgtttg ctcatctccg tcggagaggg gagtcacaag tttagtgaaa agatggtctt 7501 ttctttcatt cctt //