Typing tool
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Typing tool
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Complete norovirus genomes
| KC464498 | GII.12 | |
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| GII.P33 |
ORF1: 1..5109
ORF2: 5090..6697
ORF3: 6697..7476
LOCUS KC464498 7522 bp RNA linear VRL 19-DEC-2013
DEFINITION Norovirus Hu/GII.12/CGMH40/2010/TW, complete genome.
ACCESSION KC464498
VERSION KC464498.1
KEYWORDS .
SOURCE Norovirus Hu/GII.12/CGMH40/2010/TW
ORGANISM Norovirus Hu/GII.12/CGMH40/2010/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7522)
AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Chiu,C.H. and Chen,S.Y.
TITLE Clinical relevance and genotypes of circulating noroviruses in
northern Taiwan, 2006-2011
JOURNAL J. Med. Virol. 86 (2), 335-346 (2014)
PUBMED 24009100
REFERENCE 2 (bases 1 to 7522)
AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Huang,W.L., Chao,H.C.,
Chen,S.Y. and Chiu,C.H.
TITLE Direct Submission
JOURNAL Submitted (08-JAN-2013) Chang Gung University, Graduate Institute
of Clinical Medical Sciences, No. 259, Wenhua 1st Rd., Guishan
Township, Taoyuan County 333, Taiwan (R.O.C.)
COMMENT ##Assembly-Data-START##
Assembly Method :: Vector NTi v. 10
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7522
/organism="Norovirus Hu/GII.12/CGMH40/2010/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.12/CGMH40/2010/TW"
/isolation_source="fecal"
/host="Homo sapiens"
/db_xref="taxon:1380575"
/geo_loc_name="Taiwan"
/collection_date="12-Jan-2010"
/note="genotype: GII.12"
CDS 1..5109
/codon_start=1
/product="ORF1"
/protein_id="AGT39196.1"
/translation="MKMAASNDASAAAAAISNNDIAKSSSDGVLSSMAVTFKRALGAR
PKQPPPRETTQKQKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKEGVSGLPELSTVR
QPDETNTAFSVPPLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPA
AISLAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDI
IGKLRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKW
FFPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARK
LSTKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLA
RDLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
VEKAKRDFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLV
ARASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNV
KTVSELKQALKNIAIRRCQIVYSGLTYSLESDGKGDVRVEKVQSPAVQTNNELTGALH
HLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSK
DGCPKSKDEEEFVISSEDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASL
GLVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFW
VSPSLFVTSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGA
PEGTVATLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKN
EHWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWG
SDLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYS
RWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWT
RGPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVP
RQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5090..6697
/note="viral capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AGT39197.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEENDVHINQPTKFTPVGLFES
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6697..7476
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="AGT39198.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL
ISGSSSPSSLARSSSSISSQSTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 atgaagatgg ccgcgtctaa cgacgcttcc gctgccgctg ctgctatcag caacaacgac
61 atcgcaaaat cttcaagtga cggagtacta agtagtatgg ctgtcacttt taaacgagcc
121 ctcggggccc ggcctaaaca gccgcccccg agggaaacaa cacaaaaaca aaaacctcca
181 cgaccgccca ccccggaatt aatcaaaaag attccacctc ccccgcccaa cggggaggac
241 gatatagtgg tatcctacag tgccaaagag ggggtctccg gcctgcctga gctatccacc
301 gtcaggcagc cggatgagac aaacacagca tttagtgtcc ccccactcaa ccagagggaa
361 aacagggatg ctaaagaacc gctgcctggc accatattgg aaatgtggga cggagagatc
421 taccactacg gcttgtacgt ggagcggggt ttggtgcttg gggtgcacaa accaccagcg
481 gctattagcc tcgcaaaggt tgaattaaca ccactgtctc tgtactggag accagtgtac
541 acccctcagt acctcatatc cccggaaaca ctcaaaaagc tacatggaga gacattccct
601 tacacggcct ttgataacaa ctgttacgcc ttctgttgtt gggtcttgga tctaaacgac
661 tcttggctca gcaggaggat gattcagaga acaactggct tcttcagacc ctaccaggac
721 tggaacagga aacctctccc cactatggat gattccaaat tgaaaaaggt ggctaatata
781 gtcctgtgtg ctttgtcatc actattcacc aggcccatta aggacataat aggaaaacta
841 aggcccttaa acatactcaa catactagct tcctgcgact ggactttcgc aggagtggtg
901 gaatccctaa ttctccttgc agaactcttc ggagttttct ggacgccccc agatgtgtct
961 gcgatgatcg cccccttact aggtgactac gaactacagg gacctgaaga tctcgctgta
1021 gaactcgtac cagtagtaat gggggggata ggtttggttc taggtttcac caaggagaag
1081 attggcaaga tgctgtcatc cgccgcgtcc accctcagag cttgtaaaga ccttggagca
1141 tatgggttag aaatcctgaa gttggtcatg aaatggttct tcccgaagaa agacgaggca
1201 aatgaacttg caatggtgag atccattgag gacgcagtgc tggacctcga agcaattgaa
1261 aacaatcaca tgaccaccct gctcaaagac aaagacagtt tggcaaccta catgaagact
1321 ctggatcttg aagaggagaa agctaggaaa ctctccacca aatccgcttc ccctgatatt
1381 gtgggcacaa tcaattcact tctggcacgg attgcagctg cccgttccct ggtgcaccgg
1441 gcaaaagaag agctttccag taggccaaga cccgttgttg ttatgatatc aggaaagcca
1501 ggaataggga agacccatct tgccagagat ttggcaaaga aagttgcagc caccctcaca
1561 ggagaccaga gggtgggcct catcccacgg aatggtgtcg accattggga tgcatacaaa
1621 ggtgagagag tcgtcctttg ggatgactat ggaatgagta accccattca tgacgccctt
1681 aggctacaag aacttgctga cacttgcccc ctaacattaa attgtgatag aattgagaac
1741 aaaggaaagg tttttgacag tgatgccata attattacaa ctaatttggc taacccggca
1801 ccactggact atgttaactt tgaagcatgt tcgaggcgta tcgacttcct tgtgtacgct
1861 gatgcccccg acgttgaaaa ggcaaaacgc gacttcccag ggcaacctga catgtggaag
1921 gatgctttta gacctgactt ctcacacata aagttaatgt tggctcctca gggtggtttt
1981 gataagaacg gcaacacccc acatggaaaa ggtgtcatga aaaccctcac atctggctcc
2041 ctcgttgccc gtgcttcagg actcctccac gaaagactgg acgagtacga gttgcaaggg
2101 ccaacaccca caaccttcaa tttcgaccaa aacaaggtgt tcgcctttag gcagctcgcc
2161 gctgaaaata aatacgggct gatggacacc atgagagtgg gaagccagct caagaatgtc
2221 aaaactgtgt cagagctcaa acaggcactc aagaacattg caattagaag gtgccagata
2281 gtctacagtg gtctcacata ctcacttgaa tctgatggca aaggtgatgt aagggttgag
2341 aaggtgcaaa gtccagctgt gcagaccaac aatgagctaa ctggcgcact acaccatctg
2401 aggtgcgcta ggattagata ttatgttaag tgtgttcagg aagctttgta ttccatcatc
2461 caaattgctg gggccgcgtt tgtcaccacg cgcattgcaa agcgcatgaa catacaaaac
2521 ctctggtcca gaccacaggt ggaggatgag gaagagacca ccagcaaaga cgggtgccca
2581 aaatcaaagg atgaggagga gtttgtcatc tcgtctgaag acatcaaagc cgaaggcaag
2641 aagggaaaga acaagtctgg ccgtggcaag aaacacacag ccttttcgag taaaggtctt
2701 agtgatgagg agtacgatga gtataaaaga attagagaag aaagaaatgg taagtactcc
2761 atagaagaat acctccagga cagagacaag tactatgagg aggtggccat agccagggct
2821 actgaagagg acttctgtga ggaagaagaa gccaagattc gtcagaggat tttcagacca
2881 acaaggaaac aacgcaagga ggagagggct tcactcggac tggttacagg ctcagaaatc
2941 aggaaaagga acccggatga cttcaagccc aaaggaaaac tgtgggctga tgatgacagg
3001 agtgtcgatt acaatgaaaa gctcagtttt gaggcccccc caagcatctg gtcgagaata
3061 gtcaactttg gatcaggttg gggcttctgg gtctcaccaa gcctttttgt aacatccacc
3121 catgtcatac ctcaaggggc acaagaattt ttcggtgttt ccatcaaaca gatccaaatt
3181 cacaagtcgg gtgaattctg ccgactaaga ttcccaaaac caattagaac tgatgtgaca
3241 ggtatgatcc tggaggaggg ggcccctgaa gggactgtgg ccacactgct cataaagagg
3301 ccaactggag agctgatgcc actggcagct agaatgggta cccatgcaac tatgaggatc
3361 cagggtcgaa ctgtcggggg gcagatgggg atgctcctga cgggatccaa cgccaagagc
3421 atggatttgg gtaccacacc aggtgactgt ggatgcccat acatatacaa aagaggaaat
3481 gactacgtag tcatcggggt ccacacagct gccgcccgcg gagggaacac tgtcatctgt
3541 gcaacacaag gaagtgaggg cgaggctgtg cttgaaggtg gcgacaacaa aggcacctat
3601 tgtggcgccc caatcctagg tccaggaaat gcccccaaac tcagtactaa aaccaaattc
3661 tggaggtcct caacagcacc actcccacct ggcacatatg aaccagctta cctcggaggc
3721 aaagacccca gagtaaaagg tggcccctca ttacagcaag ttatgagaga ccaactgaaa
3781 ccatttacag aacccagagg taagccacca aagcccagtg tactagaagc agccaaaaag
3841 acaatcatta atgtccttga gcaaacaata gacccacccc aaaaatggac gttcgcacag
3901 gcgtgcgcat ccctcgacaa aacaacctct agtggctacc cgcaccacgt gcggaagaat
3961 gaacattgga atggggaatc tttcacagga aaattggctg atcaggcttc aaaagctaac
4021 ctgatgtttg aggaaggtaa acacatgaca ccagtctaca caggagccct caaggatgag
4081 ttagtcaaaa ctgataaaat atatggcaag atcaagaaga ggttgctatg gggttcagat
4141 ctggcaacca tgatccgctg cgctcgagcg ttcggagggt taatggatga actcaaggct
4201 cactgtgtca cactccccat cagggtaggg atgaacatga atgaggatgg ccccatcatt
4261 tttgagaaac actctagata cacctaccat tatgatgcag actactctcg gtgggactca
4321 acacagcaga gagctgtttt agctgcagcc ctggagatca tggtaaaatt ttccccagaa
4381 ccacacctgg cccagatcgt tgcagaggat ctcctatctc ccagcgtgat ggacgtgggc
4441 gatttcaaaa tatcaatcac tgaaggactc ccctctgggg tgccttgcac ctcacaatgg
4501 aattctattg ctcattggct cctcacgctt tgtgcactct ctgaggtaac agatttgtct
4561 cctgacatca tccaagcaaa ctcactcttc tctttctatg gtgacgatga aattgtgagc
4621 acagacatca aattagatcc agaaaagctg acagctaaac taaaagagta tggtctcaag
4681 ccaacccgtc ctgacaagac tgaagggcct ctggtcattt ctgaggactt agatggtctg
4741 accttcttac ggaggactgt gacccgtgac ccagcaggtt ggtttggaaa attggaacaa
4801 agctcaatac ttagacagat gtattggacc aggggcccca accatgagga tcccgctgaa
4861 acaatgatac cacactccca aagacccata cagttgatgt ccctattagg tgaagctgca
4921 ttacatggcc catcattcta cagcaaaatc agcaaattgg tcatctcaga gttaaaagaa
4981 ggtggcatgg acttttacgt gccaaggcaa gagccaatgt ttcgatggat gaggttctca
5041 gacttgagca cgtgggaggg cgatcgcaat ctggctccca attttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgcagccggt ctcgtaccag aggtcaacaa
5161 tgagaccatg gcacttgaac cggtggctgg ggcttcaata gccgccccac tcaccggtca
5221 aaataatgtt atagacccct ggattagatt aaactttgtg caagctccca atggagagtt
5281 tacagtttca ccccgcaatt cgcctgggga agtcctacta aacttggaat taggccctga
5341 actaaatcca tatttggcac acctttccag aatgtacaat ggttatgcag gtggagttga
5401 ggtgcaagta ctactggctg ggaacgcgtt cacggctgga aaactggtat tcgccgcagt
5461 tccccctcat tttccattag aaaacataag ccctggccaa ataaccatgt tccctcatgt
5521 aattattgat gttaggactt tagaaccagt cctattgcct cttccagatg ttaggaacaa
5581 tttctttcac tacaatcagc aaaacgaacc gaggatgagg cttgtggcaa tgctctatac
5641 cccccttagg tctaatggtt ctggtgatga tgtatttact gtctcctgca gagtgcttac
5701 tcgaccctct cctgattttg atttcaatta tttggtaccc cctacagttg aatctaaaac
5761 taaacccttc acactcccca tcttgaccat aggggagtta accaattcca gattccctgt
5821 gcctatagat gaactctaca ctagccccaa tgagagtttg gtggtacaac ctcagaacgg
5881 gagatgcgcg ctggatgggg agttgcaggg tactactcag ctcctcccca cggcgatctg
5941 ctcgttcagg ggtcggatta atcagaaagt gagtggagag aaccatgttt ggaatatgca
6001 agtcaccaac attaacggaa ccccttttga tccaacagag gatgttccag ctcctctagg
6061 tacaccagac ttttctggca agctctttgg tgtcctaagc cagagggacc atgataatgc
6121 ctgtaggagc catgatgcag tgattgcaac taattctgct aaatttaccc caaaattggg
6181 cgctatacaa attggcacat gggaagaaaa tgatgtacac atcaaccaac ccaccaaatt
6241 tactccagtt ggcttgtttg aaagtgaagg ttttaatcag tggacactcc ctaattattc
6301 tggagcctta acactcaaca tggggttggc cccccctgtg gcccccacat ttcctggcga
6361 gcaaattctt ttcttcagat cccacattcc tcttaaagga ggtgtggcag acccagttat
6421 tgattgtctc ttgccccaag agtggatcca acacctttat caggagtcag ccccttcaca
6481 aacagatgta gcactgatca gattcacaaa tccagacaca gggcgtgtcc tatttgaagc
6541 aaaattgcac aggagtggct acatcacagt ggccaacact ggtagcagac caattgtggt
6601 gccagctaat ggttacttca ggtttgactc ttgggttaat cagttttatt ctctcgcccc
6661 catgggaact gggaatgggc gcagaagggt gcagtaatgg ctggagcttt catagcaggt
6721 cttgctggtg acatagtcac caatggtatt ggctcactcg tgaacgctgg ggccaatgca
6781 ataaaccaaa aagtagactt tgaaaacaat aagcaactac agcaggcatc cttcaatcat
6841 gacaaagaga tgctgcaagc tcaaattcaa gccaccaaac agctacaggc tgatatgatt
6901 gcaatcagac aaggggtgtt gaccgcgggc ggcttctccc ccactgatgc agcaagaggt
6961 gcagtcaacg cacccatgac acaggtcttg gactggaacg ggactagaca ttgggccccc
7021 ggagccatga aaacaactgc tttctccggt gggttcacca gtgcttctca tgccaggacc
7081 gttgacctga ctaggaaaac atcagccaca ccagcctcta tgcctgtctc taggcccagt
7141 tctactgcct ctactgtttc cacccgttct accttgatta gtggatcctc tagtccttct
7201 tctctagcta ggagttcttc cagtatttct tcccaatcta cttcctcatc ctctcggact
7261 agtgattggg tacgtagcca aaacagagca ctggagcctt atatgagcgg ggcgctgcgt
7321 acagcctacg tgacacctcc atccagtagg gcttctagca atggcacagt ctcaaccgtg
7381 ccaaaagagg ttttggactc ctggacatct gcattcaaca cacacagaca accgctgttt
7441 gctcatctcc gtcggagagg ggagtcacaa gtttagtgaa aagatggtct tttctttcat
7501 tcctttgaaa tctctgtctt tt
//