Typing tool
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Typing tool
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Complete norovirus genomes
| KC464496 | GII.12 | |
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| GII.P33 |
ORF1: 1..5106
ORF2: 5087..6694
ORF3: 6694..7473
LOCUS KC464496 7519 bp RNA linear VRL 19-DEC-2013
DEFINITION Norovirus Hu/GII.12/CGMH38/2010/TW, complete genome.
ACCESSION KC464496
VERSION KC464496.1
KEYWORDS .
SOURCE Norovirus Hu/GII.12/CGMH38/2010/TW
ORGANISM Norovirus Hu/GII.12/CGMH38/2010/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7519)
AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Chiu,C.H. and Chen,S.Y.
TITLE Clinical relevance and genotypes of circulating noroviruses in
northern Taiwan, 2006-2011
JOURNAL J. Med. Virol. 86 (2), 335-346 (2014)
PUBMED 24009100
REFERENCE 2 (bases 1 to 7519)
AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Huang,W.L., Chao,H.C.,
Chen,S.Y. and Chiu,C.H.
TITLE Direct Submission
JOURNAL Submitted (08-JAN-2013) Chang Gung University, Graduate Institute
of Clinical Medical Sciences, No. 259, Wenhua 1st Rd., Guishan
Township, Taoyuan County 333, Taiwan (R.O.C.)
COMMENT ##Assembly-Data-START##
Assembly Method :: Vector NTi v. 10
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7519
/organism="Norovirus Hu/GII.12/CGMH38/2010/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.12/CGMH38/2010/TW"
/isolation_source="fecal"
/host="Homo sapiens"
/db_xref="taxon:1380573"
/country="Taiwan"
/collection_date="10-Jan-2010"
/note="genotype: GII.12"
CDS 1..5106
/codon_start=1
/product="ORF1"
/protein_id="AGT39190.1"
/translation="MKMASNDASAAAAAISNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPRETTQKQKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKEGVSGLPELSTVRQ
PDETNTAFSVPPLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAA
ISLAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDII
GKLRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKL
STKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAR
DLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDV
EKAKRDFPGQPDMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVA
RASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNVK
TVSELKQALKNIAIRRCQIVYSGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHH
LRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKD
GCPKPKDEEEFVISSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLG
LITGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWV
SPSLFVTSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAP
EGTVATLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTP
GDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNE
HWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGS
DLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSR
WDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAK
LKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR
GPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPR
QEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5087..6694
/note="viral capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AGT39191.1"
/translation="MKMASNDAAPSNDGAAGLVPEVTNETMALEPVARASIAAPLTGQ
NNVIDPWITLNFGQAPTGHLTLSPPYSPGEVLLNLELRPELNPYLANLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQITNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6694..7473
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="AGT39192.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL
ISGSSNPSSLARSSSSISSQSTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 atgaagatgg cctctaacga cgcttccgct gccgctgctg ctatcagcaa caacgacatc
61 gcaaaatctt caagtgacgg agtactaagt agtatggctg tcacttttaa acgagccctc
121 ggggcccggc ctaaacagcc gcccccgagg gaaacaacac aaaaacaaaa acctccacga
181 ccgcccaccc cggagttaat caaaaagatt ccacctcccc cgcccaacgg ggaggacgat
241 atagtggtat cctacagtgc caaagagggg gtctccggcc tgcctgagct atccaccgtc
301 aggcagccgg atgagacaaa cacagcattt agtgtccccc cactcaacca gagggaaaac
361 agggatgcta aagaaccgct gcctggcacc atattggaaa tgtgggacgg agagatctac
421 cactacggct tgtacgtgga gcggggtttg gtgcttgggg tgcacaaacc accagcggct
481 attagcctcg caaaggttga actaacacca ctgtctctgt actggagacc agtgtacacc
541 cctcagtacc tcatatcccc ggaaacactc aaaaagctac atggagagac attcccttac
601 acggcctttg ataacaactg ttacgccttc tgttgttggg tcttggatct aaacgactct
661 tggctcagca ggaggatgat tcagagaaca actggcttct tcagacccta ccaggactgg
721 aacaggaaac ctctccccac tatggatgat tccaaattga aaaaggtggc taatatagtc
781 ctgtgtgctt tgtcatcact attcaccagg cccattaagg acataatagg aaaactaagg
841 cccttaaaca tactcaacat actagcttcc tgcgactgga ctttcgcagg agtagtggaa
901 tccctaattc tccttgcaga actcttcgga gttttctgga cacccccaga tgtgtctgcg
961 atgatcgccc ccttactagg tgactacgaa ctacagggac ctgaagatct cgctgtagaa
1021 ctcgtaccag tagtaatggg ggggataggt ttggttctag gtttcaccaa ggagaagatt
1081 ggcaagatgc tgtcatccgc cgcgtccacc cttagagctt gtaaagacct tggagcatat
1141 gggttagaaa tcctgaagtt ggtcatgaaa tggttcttcc cgaagaaaga cgaggcaaat
1201 gaacttgcaa tggtgagatc cattgaggac gcagtgctgg acctcgaagc aattgaaaac
1261 aatcacatga ccaccctgct caaagacaaa gacagtttgg caacctacat gaagactctg
1321 gatcttgaag aggagaaagc taggaaactc tccaccaaat ccgcttctcc tgatattgtg
1381 ggcacaatca attcacttct ggcacggatt gcagctgccc gttccctggt gcaccgggca
1441 aaagaagagc tttccagtag gccaagaccc gttgttgtta tgatatcagg aaagccagga
1501 atagggaaga cccatcttgc cagagatttg gcaaagaaag ttgcagccac cctcacagga
1561 gaccagaggg tgggcctcat cccacggaat ggtgtcgacc attgggatgc atacaaaggt
1621 gagagagtcg tcctttggga tgactatgga atgagtaacc ccattcatga cgcccttagg
1681 ctacaagaac tcgctgacac ttgcccccta acattaaatt gtgatagaat tgagaacaaa
1741 ggaaaggttt ttgacagtga tgccataatt attacaacta atttggctaa cccggcacca
1801 ctggactatg ttaactttga agcatgttcg aggcgtatcg acttccttgt gtacgctgat
1861 gcccccgacg ttgaaaaggc aaaacgcgac ttcccagggc aacctgacat gtggaaggat
1921 gcttttagac ctgacttctc acacataaaa ttaatgttgg ctcctcaggg tggttttgat
1981 aagaacggca acaccccaca tggaaaaggc gtcatgaaaa ccctcacatc tggctccctc
2041 gttgcccgtg cttcaggact cctccacgaa agactggacg agtacgagtt gcaagggcca
2101 acacccacaa ccttcaattt cgaccaaaac aaggtgttcg cctttaggca gctcgccgct
2161 gaaaataaat acgggctgat ggacaccatg agagtgggaa gccagctcaa gaatgtcaaa
2221 actgtgtcag agctcaaaca ggcactcaag aacattgcaa ttagaaggtg ccagatagtc
2281 tacagtggtc tcacatactc acttgaatct gatggcaaag gtaatgtaag ggttgagaag
2341 gtgcaaagtc cagctgtgca gaccaacaat gagctaactg gcgcactaca ccatctgagg
2401 tgcgctagga ttagatatta tgttaagtgt gttcaggaag ctttgtattc catcatccaa
2461 attgctgggg ccgcgtttgt caccacgcgc attgcaaagc gcatgaacat acaaaacctc
2521 tggtccagac cacaggtgga ggatgaggaa gagaccacca gcaaagacgg atgcccaaaa
2581 ccaaaggatg aggaggagtt tgtcatctcg tctgaagaca tcaaagtcga aggcaagaag
2641 ggaaagaaca agtctggccg tggcaagaaa cacacagcct tttcgagtaa aggtcttagt
2701 gatgaggagt acgatgagta taaaagaatt agagaagaaa gaaatggtaa gtactccata
2761 gaagaatacc tccaggacag agacaagtac tatgaggagg tggccatagc cagggctact
2821 gaagaggact tctgtgagga agaagaagcc aagattcgtc agaggatttt cagaccaaca
2881 aggaaacaac gcaaggagga gagggcttca ctcggactga ttacaggctc agaaatcagg
2941 aaaaggaacc cggatgactt caaacccaaa ggaaaactgt gggctgatga tgacaggagt
3001 gtcgattaca atgaaaagct cagttttgag gcccccccaa gcatctggtc gagaatagtc
3061 aactttggat caggttgggg cttctgggtc tcaccaagcc tttttgtaac atccacccat
3121 gtcatacctc aaggggcaca agaatttttc ggtgtttcca tcaaacagat ccaaattcac
3181 aagtcgggtg aattctgccg actaagattc ccaaaaccaa ttagaactga tgtgacaggt
3241 atgatcctgg aggagggggc ccctgaaggg actgtggcca cactgctcat aaagaggcca
3301 actggagagc tgatgccact ggcagctaga atgggtaccc atgcaactat gaggatccag
3361 ggtcgaactg tcggggggca gatggggatg ctcctgacgg gatccaacgc caagagcatg
3421 gatttgggta ccacaccagg tgactgtgga tgcccatata tatacaaaag aggaaatgac
3481 tacgtagtca tcggggtcca cacagctgcc gcccgcggag ggaacactgt catctgtgca
3541 acacaaggaa gtgagggcga ggctgtgctt gaaggtggcg acaacaaagg cacctattgt
3601 ggcgccccaa tcctaggtcc aggaaatgcc cccaaactca gtactaaaac caaattctgg
3661 aggtcctcaa cagcaccact cccacctggc acatatgaac cagcttacct cggaggcaaa
3721 gaccccagag taaaaggtgg cccctcatta cagcaagtta tgagagacca actgaaacca
3781 tttacagaac ccagaggtaa gccaccaaag cccagtgtac tagaagcagc caaaaagaca
3841 atcattaatg tccttgagca aacaatagac ccaccccaaa aatggacgtt cgcacaggcg
3901 tgcgcatccc tcgacaaaac aacctctagt ggctacccgc accacgtgcg gaagaatgaa
3961 cattggaatg gggaatcttt cacaggaaaa ttggctgatc aggcttcaaa agctaacctg
4021 atgtttgagg aaggtaaaca catgacacca gtctacacag gagccctcaa ggatgagtta
4081 gtcaaaactg ataaaatata tggcaagatc aagaagaggt tgctatgggg ttcagacctg
4141 gcaaccatga tccgctgcgc tcgagcgttc ggagggttaa tggatgaact caaggctcac
4201 tgtgtcacac tccccatcag ggtagggatg aacatgaatg aggatggccc catcattttt
4261 gagaaacact ctagatacac ctaccattat gatgcagact actctcggtg ggactcaaca
4321 cagcagagag ctgttttagc tgcagccctg gagatcatgg taaaattttc cccagaacca
4381 cacctggccc agatcgttgc agaggatctc ctatctccca gcgtgatgga cgtgggcgat
4441 ttcaaaatat caatcactga aggactcccc tctggggtgc cttgcacctc acaatggaat
4501 tctattgctc attggctcct cacgctttgt gcactctctg aggtaacaga tttgtctcct
4561 gacatcatcc aagcaaactc actcttctct ttctatggtg acgatgaaat tgtgagcaca
4621 gacatcaaat tagatccaga aaagctgaca gctaaactaa aagagtatgg tctcaagcca
4681 acccgtcctg acaagactga agggcctctg gtcatttctg aggacttaga tggtctgacc
4741 ttcttacgga ggactgtgac ccgtgaccca gcaggttggt ttggaaaatt ggaacaaagc
4801 tcaatactta gacagatgta ttggaccagg ggccccaacc atgaggatcc cgctgaaaca
4861 atgataccac actcccaaag acccatacag ttgatgtccc tattaggtga agctgcatta
4921 catggcccat cattctacag caaaatcagc aaattggtca tctcagagtt aaaagagggt
4981 ggcatggact tttacgtgcc aaggcaagag ccaatgtttc gatggatgag gttctcagac
5041 ttgagcacgt gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc
5101 gaatgacgcc gctccatcta atgatggtgc agccggtctc gtaccagagg tcacaaatga
5161 gaccatggca cttgaaccgg tggctagggc ttcaatagcc gccccactca ccggtcaaaa
5221 taatgttata gacccctgga ttacattaaa ctttgggcaa gctcccactg gacatcttac
5281 cctttcaccc ccctattcgc ctggggaagt cctactaaac ttggaattac gccctgaact
5341 aaatccatat ttggctaacc tttccagaat gtacaatggt tatgcaggtg gagttgaggt
5401 gcaagtacta ctggctggga acgcgttcac ggctggaaaa ctggtattcg ccgcagttcc
5461 ccctcatttt ccattagaaa acataagccc tggccaaata accatgttcc ctcatgtaat
5521 tattgatgtt aggactttag aaccagtcct attgcctctt ccagatgtta ggaacaattt
5581 ctttcactac aatcagcaaa acgaaccgag gatgaggctt gtggcaatgc tctatacccc
5641 ccttaggtct aatggttctg gtgatgatgt atttactgtc tcctgtagag tgcttactcg
5701 accctctcct gattttgatt tcaattattt ggtaccccct acagttgaat ctaaaactaa
5761 acccttcaca ctccccatct taaccatagg ggagttaacc aattccagat tccctgtgcc
5821 tatagatgaa ctctacacta gccccaatga gagtttggtg gtacaacccc agaacgggag
5881 atgcgcgctg gatggggagt tgcagggtac tactcagctc ctccccacgg cgatctgctc
5941 gttcaggggt cggattaatc agaaagtgag tggagagaac catgtttgga atatgcaaat
6001 caccaacatt aacggaaccc cttttgatcc aacagaggat gttccagctc ctctaggtac
6061 accagacttt tctggcaagc tctttggcgt cctaagccag agggaccatg ataatgcctg
6121 taggagccat gatgcagtga ttgcaactaa ttctgctaaa tttaccccaa aattgggcgc
6181 tatacaaatt ggcacatggg aacaagatga tgtacacatc aaccaaccca ccaaatttac
6241 tccagttggc ttgtttgaaa gtgaaggttt taatcagtgg acactcccta attattctgg
6301 agccttaaca ctcaacatgg ggttggcccc ccctgtggcc cccacatttc ctggcgagca
6361 aattcttttc ttcagatccc acattcctct taaaggaggt gtggcagacc cagttattga
6421 ttgtctcttg ccccaagagt ggatccaaca cctttatcag gagtcagccc cttcacaaac
6481 agatgtagca ctgatcagat tcacaaatcc agacacaggg cgtgtcctat ttgaagcaaa
6541 attgcacagg agtggctaca tcacagtggc caacactggt agcagaccaa tcgtggtgcc
6601 agctaatggt tacttcaggt ttgactcttg ggttaatcag ttttattctc tcgcccccat
6661 gggaactggg aatgggcgca gaagggtgca gtaatggctg gagctttcat agcaggtctt
6721 gctggtgata tagtcaccaa tggtattggc tcactcgtga acgctggggc caatgcaata
6781 aaccaaaaag tagactttga aaacaataag caactacagc aggcatcctt caatcatgac
6841 aaagagatgc tgcaagctca aattcaagcc accaaacagc tacaggctga tatgattgca
6901 atcagacaag gggtgttgac cgcgggcggc ttctccccca ctgatgcagc aagaggtgca
6961 gtcaacgcac ccatgacaca ggtcttggac tggaacggga ctagacattg ggcccccgga
7021 gccatgaaaa caactgcttt ctccggtggg ttcaccagtg cttctcatgc caggaccgtt
7081 gacctgacta ggaaaacatc agccacacca gcctctatgc ctgtctctag gcccagttct
7141 actgcctcta ctgtttccac ccgttctacc ttgattagtg gatcctctaa tccttcttct
7201 ctagctagga gttcttccag tatttcttcc caatctactt cctcatcctc tcggactagt
7261 gattgggtac gtagccaaaa cagagcactg gagccttata tgagcggggc gctgcgtaca
7321 gcctacgtga cacctccatc cagtagggct tctagcaatg gcacagtctc aaccgtgcca
7381 aaagaggttt tggactcctg gacatctgca ttcaacacac acagacaacc gctgtttgct
7441 catctccgtc ggagagggga gtcacaagtt tagtgaaaag atggtctttt ctttcattcc
7501 tttgaaatct ctgtctttt
//